3E8KA

Crystal structure of hk97 prohead ii
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
256
structure length
256
Chain Sequence
MQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYVREEVFTNAPGDSDITFSKQTANVKTIAHWVQASRQVMDDAPMLQSYINNRLMYGLALKEEGQLLNGDGTGDNLEGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVFDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords Major capsid protein
publication title An unexpected twist in viral capsid maturation.
pubmed doi rcsb
source organism Enterobacteria phage hk97
total genus 47
structure length 256
sequence length 256
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2008-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05065 Phage_capsid Phage capsid family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2320.10 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 domain 3e8kA02
3.30.2400.10 Alpha Beta 2-Layer Sandwich Major capsid protein gp5 fold Major capsid protein gp5 3e8kA01
2PK8A 2FT1A 1OHGA 2E0ZA 2FSYA 3E8KA 3DKTA
chains in the Genus database with same CATH superfamily
2FT1A 2KDXA 5AUNA 4DT0A 3E8KA 5AUPA 3DKTA 1WZ2A 4EFAE 1OHGA 3A44A 4DL0E 2DMAA 3K5BA 2E0ZA 2FSYA 1QU3A 2LC0A 2DM9A 3V6IA 2PK8A 1YUEA 5AUOA 3A43A
chains in the Genus database with same CATH topology
2PK8A 2FT1A 1OHGA 2E0ZA 2FSYA 3E8KA 3DKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PK8 A;  2FT1 A;  1OHG A;  2E0Z A;  2FSY A;  3E8K A;  3DKT A; 
#chains in the Genus database with same CATH topology
 2FT1 A;  2KDX A;  5AUN A;  4DT0 A;  3E8K A;  5AUP A;  3DKT A;  1WZ2 A;  4EFA E;  1OHG A;  3A44 A;  4DL0 E;  2DMA A;  3K5B A;  2E0Z A;  2FSY A;  1QU3 A;  2LC0 A;  2DM9 A;  3V6I A;  2PK8 A;  1YUE A;  5AUO A;  3A43 A; 
#chains in the Genus database with same CATH homology
 2PK8 A;  2FT1 A;  1OHG A;  2E0Z A;  2FSY A;  3E8K A;  3DKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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