3ECPA

Crystal structure of tn5 transposase complexed with 5' phosphorylated transposon end dna
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
475
structure length
458
Chain Sequence
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Tn5 transposase
publication title Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
pubmed doi rcsb
source organism Escherichia coli
molecule tags Dna recombination/dna
total genus 156
structure length 458
sequence length 475
ec nomenclature
pdb deposition date 2008-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 3ecpA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 3ecpA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 3ecpA02
4DM0A 1MUSA 1MM8A 3ECPA 1B7EA 1MUHA
chains in the Genus database with same CATH superfamily
4WA6B 5GIPA 2EFEA 3TDLA 2OT3A 1E7AA 4OT2A 4J2VA 4LUFA 5BPKA 3JQZA 1E7FA 1KXPD 4TQ1A 3MHSB 2DYOA 2E0XA 5D7GA 1SB0A 4Z9OA 5IJ5A 1E7EA 3LU6A 3V08A 2Z8KA 2BXNA 4GDXA 2BXDA 1JNBA 2BXFA 2LXSA 4HGMB 2LQHA 4GG2A 2BXMA 2Z8IA 3FNMA 4GDKB 2BXQA 3A73A 3MHHB 4E99A 2NQOA 5IIHA 5ID7A 4ZC6A 1LNSA 3VQIA 3NMUA 3SIUB 5ID9A 1MIWA 1VFIA 2ROHA 1BKEA 2DG5A 4D7XA 3H3AA 4MBEC 1MUSA 5HOZA 2VUFA 2VDBA 4ZCGA 4F5VA 3NVIA 1FOUA 2I30A 4IW1A 1HA2A 1H9ZA 2BXLA 2LXTA 3KJLA 2XW0A 1UORA 4LB2A 4M70B 1KDXA 1B7EA 3G9KD 2BX8A 3B9LA 4LUHA 1E7IA 3FWCC 1HK3A 5IIUA 1MA9A 1TXUA 3FWBC 1BJ5A 2YDFA 1BM0A 4W4UB 2XVQA 4F5TA 3WHSA 2KWFA 2BXAA 3NVKA 1HK1A 1LOTA 4IW2A 2V36A 4HGKA 1HK5A 4LA0A 3ECPA 4DHXB 2BXBA 3PLAA 3KIKA 4FJCB 2I2ZA 4K2CA 2XVVA 2XVWA 4I9OA 1HK2A 5GIOA 2BXEA 4F5UA 3GQUA 2KBZA 4DM0A 1AO6A 5IJEA 1HK4A 1J7EA 1E7GA 4L8UA 5DQFA 4F5SA 2JUHA 5GINA 4C31B 2BXIA 3LU8A 5DBYA 4G03A 3V09A 3GQXA 5GHKA 1MM8A 4N0UD 4OTTA 4S1YA 5FUOA 2GUTA 3H37A 1GNIA 3WHQA 2CKXA 1H5WA 1NT2B 1TF0A 2BXPA 2BXGA 2BXHA 4LB9A 3V03A 3M99C 4Z69A 2DYMA 4OTUA 4PO0A 3NVMA 4L9KA 1E7CA 5IFOA 2BXOA 3ICXA 5B5TA 3LU7A 3A75A 2DBUA 1GNJA 4ZUXV 2QM6A 4GDLB 4N3ZA 1MIVA 1VZSA 4OR0A 4EMXA 2DBXA 4K71A 4TQ0A 5IJFA 4ZBRA 2LQIA 1E7HA 2K0NA 2XMOA 2XSIA 2BXKA 1E78A 4L9QA 4N0FD 1MUHA 3B9MA 4JK4A 1J78A 2LOQA 1KW2A 2AJEA 4FIPB 1O9XA 3CX9A 3JRYA 2QHBA 1E7BA 2EFCA 2EFDA 4G01A 5IIXA 2XVUA 2NNWA 3W1SA 2EFHA 3SQJA 4NAWB 3SIVB 1IJGA 3WHRA 2DBWA 3GA9L 2E0YA 2OZBB 4BKEA 4BY9C 2QMCA 4ZBQA 2BXCA 2VUEA 3BPJA 4G04A 1MIYA 2Z8JA 2XW1A 4FK5B 1N5UA 3UIVA 2AGHB 4ZBKA
chains in the Genus database with same CATH topology
4DM0A 1MUSA 1MM8A 3ECPA 1B7EA 1MUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DM0 A;  1MUS A;  1MM8 A;  3ECP A;  1B7E A;  1MUH A; 
#chains in the Genus database with same CATH topology
 4WA6 B;  5GIP A;  2EFE A;  3TDL A;  2OT3 A;  1E7A A;  4OT2 A;  4J2V A;  4LUF A;  5BPK A;  3JQZ A;  1E7F A;  1KXP D;  4TQ1 A;  3MHS B;  2DYO A;  2E0X A;  5D7G A;  1SB0 A;  4Z9O A;  5IJ5 A;  1E7E A;  3LU6 A;  3V08 A;  2Z8K A;  2BXN A;  4GDX A;  2BXD A;  1JNB A;  2BXF A;  2LXS A;  4HGM B;  2LQH A;  4GG2 A;  2BXM A;  2Z8I A;  3FNM A;  4GDK B;  2BXQ A;  3A73 A;  3MHH B;  4E99 A;  2NQO A;  5IIH A;  5ID7 A;  4ZC6 A;  1LNS A;  3VQI A;  3NMU A;  3SIU B;  5ID9 A;  1MIW A;  1VFI A;  2ROH A;  1BKE A;  2DG5 A;  4D7X A;  3H3A A;  4MBE C;  1MUS A;  5HOZ A;  2VUF A;  2VDB A;  4ZCG A;  4F5V A;  3NVI A;  1FOU A;  2I30 A;  4IW1 A;  1HA2 A;  1H9Z A;  2BXL A;  2LXT A;  3KJL A;  2XW0 A;  1UOR A;  4LB2 A;  4M70 B;  1KDX A;  1B7E A;  3G9K D;  2BX8 A;  3B9L A;  4LUH A;  1E7I A;  3FWC C;  1HK3 A;  5IIU A;  1MA9 A;  1TXU A;  3FWB C;  1BJ5 A;  2YDF A;  1BM0 A;  4W4U B;  2XVQ A;  4F5T A;  3WHS A;  2KWF A;  2BXA A;  3NVK A;  1HK1 A;  1LOT A;  4IW2 A;  2V36 A;  4HGK A;  1HK5 A;  4LA0 A;  3ECP A;  4DHX B;  2BXB A;  3PLA A;  3KIK A;  4FJC B;  2I2Z A;  4K2C A;  2XVV A;  2XVW A;  4I9O A;  1HK2 A;  5GIO A;  2BXE A;  4F5U A;  3GQU A;  2KBZ A;  4DM0 A;  1AO6 A;  5IJE A;  1HK4 A;  1J7E A;  1E7G A;  4L8U A;  5DQF A;  4F5S A;  2JUH A;  5GIN A;  4C31 B;  2BXI A;  3LU8 A;  5DBY A;  4G03 A;  3V09 A;  3GQX A;  5GHK A;  1MM8 A;  4N0U D;  4OTT A;  4S1Y A;  5FUO A;  2GUT A;  3H37 A;  1GNI A;  3WHQ A;  2CKX A;  1H5W A;  1NT2 B;  1TF0 A;  2BXP A;  2BXG A;  2BXH A;  4LB9 A;  3V03 A;  3M99 C;  4Z69 A;  2DYM A;  4OTU A;  4PO0 A;  3NVM A;  4L9K A;  1E7C A;  5IFO A;  2BXO A;  3ICX A;  5B5T A;  3LU7 A;  3A75 A;  2DBU A;  1GNJ A;  4ZUX V;  2QM6 A;  4GDL B;  4N3Z A;  1MIV A;  1VZS A;  4OR0 A;  4EMX A;  2DBX A;  4K71 A;  4TQ0 A;  5IJF A;  4ZBR A;  2LQI A;  1E7H A;  2K0N A;  2XMO A;  2XSI A;  2BXK A;  1E78 A;  4L9Q A;  4N0F D;  1MUH A;  3B9M A;  4JK4 A;  1J78 A;  2LOQ A;  1KW2 A;  2AJE A;  4FIP B;  1O9X A;  3CX9 A;  3JRY A;  2QHB A;  1E7B A;  2EFC A;  2EFD A;  4G01 A;  5IIX A;  2XVU A;  2NNW A;  3W1S A;  2EFH A;  3SQJ A;  4NAW B;  3SIV B;  1IJG A;  3WHR A;  2DBW A;  3GA9 L;  2E0Y A;  2OZB B;  4BKE A;  4BY9 C;  2QMC A;  4ZBQ A;  2BXC A;  2VUE A;  3BPJ A;  4G04 A;  1MIY A;  2Z8J A;  2XW1 A;  4FK5 B;  1N5U A;  3UIV A;  2AGH B;  4ZBK A; 
#chains in the Genus database with same CATH homology
 4DM0 A;  1MUS A;  1MM8 A;  3ECP A;  1B7E A;  1MUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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