3ECPA

Crystal structure of tn5 transposase complexed with 5' phosphorylated transposon end dna
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
475
structure length
458
Chain Sequence
TSALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLRESFTPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna recombination/dna
molecule keywords Tn5 transposase
publication title Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
pubmed doi rcsb
source organism Escherichia coli
total genus 156
structure length 458
sequence length 475
ec nomenclature
pdb deposition date 2008-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 3ecpA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 3ecpA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 3ecpA02
1MUSA 1MUHA 3ECPA 4DM0A 1MM8A 1B7EA
chains in the Genus database with same CATH superfamily
1TF0A 2BXLA 1BKEA 1BJ5A 1VFIA 4Z9OA 4LUFA 1MA9A 2XMOA 3JRYA 1NT2B 3ECPA 2LXSA 1HK4A 2EFDA 3KJLA 1HK2A 1N5UA 2LXTA 1E7BA 4W4UB 2VUEA 2EFCA 4TQ0A 4OR0A 5GHKA 4GDLB 4IW2A 2DYMA 4ZC6A 2EFHA 3FNMA 1MUHA 2YDFA 1LOTA 5GIOA 4DM0A 1MIVA 1MIYA 2QMCA 4HGKA 4EMXA 3SIUB 4G04A 2DG5A 4GDKB 4LUHA 4TQ1A 3WHRA 2Z8JA 1SB0A 4C31B 2LQHA 4NAWB 1MUSA 3V03A 4LA0A 4M70B 3V08A 4N0FD 2EFEA 2Z8KA 4ZBQA 1JNBA 2BXQA 1O9XA 2BXOA 3JQZA 3UIVA 3VQIA 4L8UA 3SQJA 1J78A 1HA2A 4LB9A 3GQXA 3PLAA 2BXBA 2JUHA 5ID9A 2E0XA 5IFOA 4OT2A 3SIVB 2QM6A 5IIUA 3GQUA 4BKEA 1H9ZA 4ZBRA 5GINA 4GDXA 3M99C 1FOUA 4PO0A 3BPJA 2VDBA 2BXHA 5DBYA 1B7EA 4GG2A 4FJCB 1E7FA 2K0NA 4JK4A 4G01A 2GUTA 3NVIA 4K2CA 2BXIA 1E78A 2XW1A 3FWBC 2BXCA 2DBWA 1E7IA 1HK1A 2DYOA 3FWCC 3H3AA 3MHSB 4FIPB 4K71A 5D7GA 2AJEA 5HOZA 2QHBA 4IW1A 4BY9C 1J7EA 2DBUA 4HGMB 3B9LA 1IJGA 2XVVA 4L9QA 5IIHA 2BXGA 2Z8IA 5FUOA 4D7XA 2KBZA 4FK5B 2LQIA 2BXAA 5IJFA 1HK5A 4ZCGA 2XVQA 1VZSA 2I2ZA 2DBXA 3ICXA 4Z69A 3GA9L 2XVUA 3B9MA 2I30A 3LU8A 4N0UD 1H5WA 1E7AA 4N3ZA 1BM0A 4F5TA 1AO6A 2VUFA 3TDLA 1E7EA 2NQOA 2ROHA 3CX9A 3LU6A 4WA6B 4F5SA 2BXMA 1HK3A 2AGHB 4MBEC 4E99A 3MHHB 4J2VA 4LB2A 1GNIA 4I9OA 2OZBB 2BXPA 4S1YA 3KIKA 2BXDA 3A75A 3H37A 5DQFA 5ID7A 2KWFA 2CKXA 2E0YA 2XSIA 4F5UA 3NVKA 2BXFA 2XVWA 4OTUA 3WHQA 5IIXA 2NNWA 3NVMA 1KXPD 1KW2A 1E7GA 5B5TA 4ZUXV 2BX8A 4F5VA 1KDXA 2BXEA 1UORA 2XW0A 4ZBKA 5GIPA 1MM8A 1E7HA 3NMUA 2BXNA 5IJEA 4OTTA 1MIWA 2BXKA 4L9KA 3W1SA 1TXUA 4DHXB 2V36A 2OT3A 2LOQA 1GNJA 3LU7A 3G9KD 4G03A 3V09A 3WHSA 5IJ5A 1LNSA 5BPKA 1E7CA 3A73A
chains in the Genus database with same CATH topology
1MUSA 1MUHA 3ECPA 4DM0A 1MM8A 1B7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUS A;  1MUH A;  3ECP A;  4DM0 A;  1MM8 A;  1B7E A; 
#chains in the Genus database with same CATH topology
 1TF0 A;  2BXL A;  1BKE A;  1BJ5 A;  1VFI A;  4Z9O A;  4LUF A;  1MA9 A;  2XMO A;  3JRY A;  1NT2 B;  3ECP A;  2LXS A;  1HK4 A;  2EFD A;  3KJL A;  1HK2 A;  1N5U A;  2LXT A;  1E7B A;  4W4U B;  2VUE A;  2EFC A;  4TQ0 A;  4OR0 A;  5GHK A;  4GDL B;  4IW2 A;  2DYM A;  4ZC6 A;  2EFH A;  3FNM A;  1MUH A;  2YDF A;  1LOT A;  5GIO A;  4DM0 A;  1MIV A;  1MIY A;  2QMC A;  4HGK A;  4EMX A;  3SIU B;  4G04 A;  2DG5 A;  4GDK B;  4LUH A;  4TQ1 A;  3WHR A;  2Z8J A;  1SB0 A;  4C31 B;  2LQH A;  4NAW B;  1MUS A;  3V03 A;  4LA0 A;  4M70 B;  3V08 A;  4N0F D;  2EFE A;  2Z8K A;  4ZBQ A;  1JNB A;  2BXQ A;  1O9X A;  2BXO A;  3JQZ A;  3UIV A;  3VQI A;  4L8U A;  3SQJ A;  1J78 A;  1HA2 A;  4LB9 A;  3GQX A;  3PLA A;  2BXB A;  2JUH A;  5ID9 A;  2E0X A;  5IFO A;  4OT2 A;  3SIV B;  2QM6 A;  5IIU A;  3GQU A;  4BKE A;  1H9Z A;  4ZBR A;  5GIN A;  4GDX A;  3M99 C;  1FOU A;  4PO0 A;  3BPJ A;  2VDB A;  2BXH A;  5DBY A;  1B7E A;  4GG2 A;  4FJC B;  1E7F A;  2K0N A;  4JK4 A;  4G01 A;  2GUT A;  3NVI A;  4K2C A;  2BXI A;  1E78 A;  2XW1 A;  3FWB C;  2BXC A;  2DBW A;  1E7I A;  1HK1 A;  2DYO A;  3FWC C;  3H3A A;  3MHS B;  4FIP B;  4K71 A;  5D7G A;  2AJE A;  5HOZ A;  2QHB A;  4IW1 A;  4BY9 C;  1J7E A;  2DBU A;  4HGM B;  3B9L A;  1IJG A;  2XVV A;  4L9Q A;  5IIH A;  2BXG A;  2Z8I A;  5FUO A;  4D7X A;  2KBZ A;  4FK5 B;  2LQI A;  2BXA A;  5IJF A;  1HK5 A;  4ZCG A;  2XVQ A;  1VZS A;  2I2Z A;  2DBX A;  3ICX A;  4Z69 A;  3GA9 L;  2XVU A;  3B9M A;  2I30 A;  3LU8 A;  4N0U D;  1H5W A;  1E7A A;  4N3Z A;  1BM0 A;  4F5T A;  1AO6 A;  2VUF A;  3TDL A;  1E7E A;  2NQO A;  2ROH A;  3CX9 A;  3LU6 A;  4WA6 B;  4F5S A;  2BXM A;  1HK3 A;  2AGH B;  4MBE C;  4E99 A;  3MHH B;  4J2V A;  4LB2 A;  1GNI A;  4I9O A;  2OZB B;  2BXP A;  4S1Y A;  3KIK A;  2BXD A;  3A75 A;  3H37 A;  5DQF A;  5ID7 A;  2KWF A;  2CKX A;  2E0Y A;  2XSI A;  4F5U A;  3NVK A;  2BXF A;  2XVW A;  4OTU A;  3WHQ A;  5IIX A;  2NNW A;  3NVM A;  1KXP D;  1KW2 A;  1E7G A;  5B5T A;  4ZUX V;  2BX8 A;  4F5V A;  1KDX A;  2BXE A;  1UOR A;  2XW0 A;  4ZBK A;  5GIP A;  1MM8 A;  1E7H A;  3NMU A;  2BXN A;  5IJE A;  4OTT A;  1MIW A;  2BXK A;  4L9K A;  3W1S A;  1TXU A;  4DHX B;  2V36 A;  2OT3 A;  2LOQ A;  1GNJ A;  3LU7 A;  3G9K D;  4G03 A;  3V09 A;  3WHS A;  5IJ5 A;  1LNS A;  5BPK A;  1E7C A;  3A73 A; 
#chains in the Genus database with same CATH homology
 1MUS A;  1MUH A;  3ECP A;  4DM0 A;  1MM8 A;  1B7E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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