3EH4A

Structure of the reduced form of cytochrome ba3 oxidase from thermus thermophilus
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
557
structure length
557
Chain Sequence
SEISRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGGRLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
publication title Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 200
structure length 557
sequence length 557
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 3eh4A00
5B1BA 4G72A 1XMEA 4G70A 5DJQA 4GP4A 3X2QA 3QJUA 2EIJA 4GP8A 4FAAA 5B1AA 4G7QA 3S8FA 1AR1A 2GSMA 2Y69A 3OM3A 1V54A 3QJQA 3WFEB 1OCZA 1OCCA 2QPEA 3OMNA 2ZXWA 1EHKA 3WG7A 3WFBB 3FYEA 1QLEA 2EIMA 2YEVA 3OMIA 3OMAA 1M56A 3AG3A 3EH4A 1M57A 1V55A 3ABMA 3WFCB 4N4YA 3ASNA 3BVDA 1OCRA 3EH5A 5IY5A 3S3CA 4G71A 1OCOA 3EHBA 3HB3A 2DYSA 2DYRA 4G7SA 4G7RA 3AYGA 5B3SA 3QJTA 3O0RB 2EINA 4GP5A 2EIKA 3S8GA 4FA7A 1FFTA 3WFDB 2QPDA 3QJVA 2OCCA 4XYDA 3S3DA 3QJRA 3QJSA 3DTUA 3AG4A 3S3BA 3AG1A 2EILA 3ABLA 3ASOA 3AYFA 3FYIA 3ABKA 3MK7A 3AG2A 3EH3A
chains in the Genus database with same CATH superfamily
5B1BA 4G72A 1XMEA 4G70A 5DJQA 4GP4A 3X2QA 3QJUA 2EIJA 4GP8A 4FAAA 5B1AA 4G7QA 3S8FA 1AR1A 2GSMA 2Y69A 3OM3A 1V54A 3QJQA 3WFEB 1OCZA 1OCCA 2QPEA 3OMNA 2ZXWA 1EHKA 3WG7A 3WFBB 3FYEA 1QLEA 2EIMA 2YEVA 3OMIA 3OMAA 1M56A 3AG3A 3EH4A 1M57A 1V55A 3ABMA 3WFCB 4N4YA 3ASNA 3BVDA 1OCRA 3EH5A 5IY5A 3S3CA 4G71A 1OCOA 3EHBA 3HB3A 2DYSA 2DYRA 4G7SA 4G7RA 3AYGA 5B3SA 3QJTA 3O0RB 2EINA 4GP5A 2EIKA 3S8GA 4FA7A 1FFTA 3WFDB 2QPDA 3QJVA 2OCCA 4XYDA 3S3DA 3QJRA 3QJSA 3DTUA 3AG4A 3S3BA 3AG1A 2EILA 3ABLA 3ASOA 3AYFA 3FYIA 3ABKA 3MK7A 3AG2A 3EH3A
chains in the Genus database with same CATH topology
5B1BA 4G72A 1XMEA 4G70A 5DJQA 4GP4A 3X2QA 3QJUA 2EIJA 4GP8A 4FAAA 5B1AA 4G7QA 3S8FA 1AR1A 2GSMA 2Y69A 3OM3A 1V54A 3QJQA 3WFEB 1OCZA 1OCCA 2QPEA 3OMNA 2ZXWA 1EHKA 3WG7A 3WFBB 3FYEA 1QLEA 2EIMA 2YEVA 3OMIA 3OMAA 1M56A 3AG3A 3EH4A 1M57A 1V55A 3ABMA 3WFCB 4N4YA 3ASNA 3BVDA 1OCRA 3EH5A 5IY5A 3S3CA 4G71A 1OCOA 3EHBA 3HB3A 2DYSA 2DYRA 4G7SA 4G7RA 3AYGA 5B3SA 3QJTA 3O0RB 2EINA 4GP5A 2EIKA 3S8GA 4FA7A 1FFTA 3WFDB 2QPDA 3QJVA 2OCCA 4XYDA 3S3DA 3QJRA 3QJSA 3DTUA 3AG4A 3S3BA 3AG1A 2EILA 3ABLA 3ASOA 3AYFA 3FYIA 3ABKA 3MK7A 3AG2A 3EH3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B1B A;  4G72 A;  1XME A;  4G70 A;  5DJQ A;  4GP4 A;  3X2Q A;  3QJU A;  2EIJ A;  4GP8 A;  4FAA A;  5B1A A;  4G7Q A;  3S8F A;  1AR1 A;  2GSM A;  2Y69 A;  3OM3 A;  1V54 A;  3QJQ A;  3WFE B;  1OCZ A;  1OCC A;  2QPE A;  3OMN A;  2ZXW A;  1EHK A;  3WG7 A;  3WFB B;  3FYE A;  1QLE A;  2EIM A;  2YEV A;  3OMI A;  3OMA A;  1M56 A;  3AG3 A;  3EH4 A;  1M57 A;  1V55 A;  3ABM A;  3WFC B;  4N4Y A;  3ASN A;  3BVD A;  1OCR A;  3EH5 A;  5IY5 A;  3S3C A;  4G71 A;  1OCO A;  3EHB A;  3HB3 A;  2DYS A;  2DYR A;  4G7S A;  4G7R A;  3AYG A;  5B3S A;  3QJT A;  3O0R B;  2EIN A;  4GP5 A;  2EIK A;  3S8G A;  4FA7 A;  1FFT A;  3WFD B;  2QPD A;  3QJV A;  2OCC A;  4XYD A;  3S3D A;  3QJR A;  3QJS A;  3DTU A;  3AG4 A;  3S3B A;  3AG1 A;  2EIL A;  3ABL A;  3ASO A;  3AYF A;  3FYI A;  3ABK A;  3MK7 A;  3AG2 A;  3EH3 A; 
#chains in the Genus database with same CATH topology
 5B1B A;  4G72 A;  1XME A;  4G70 A;  5DJQ A;  4GP4 A;  3X2Q A;  3QJU A;  2EIJ A;  4GP8 A;  4FAA A;  5B1A A;  4G7Q A;  3S8F A;  1AR1 A;  2GSM A;  2Y69 A;  3OM3 A;  1V54 A;  3QJQ A;  3WFE B;  1OCZ A;  1OCC A;  2QPE A;  3OMN A;  2ZXW A;  1EHK A;  3WG7 A;  3WFB B;  3FYE A;  1QLE A;  2EIM A;  2YEV A;  3OMI A;  3OMA A;  1M56 A;  3AG3 A;  3EH4 A;  1M57 A;  1V55 A;  3ABM A;  3WFC B;  4N4Y A;  3ASN A;  3BVD A;  1OCR A;  3EH5 A;  5IY5 A;  3S3C A;  4G71 A;  1OCO A;  3EHB A;  3HB3 A;  2DYS A;  2DYR A;  4G7S A;  4G7R A;  3AYG A;  5B3S A;  3QJT A;  3O0R B;  2EIN A;  4GP5 A;  2EIK A;  3S8G A;  4FA7 A;  1FFT A;  3WFD B;  2QPD A;  3QJV A;  2OCC A;  4XYD A;  3S3D A;  3QJR A;  3QJS A;  3DTU A;  3AG4 A;  3S3B A;  3AG1 A;  2EIL A;  3ABL A;  3ASO A;  3AYF A;  3FYI A;  3ABK A;  3MK7 A;  3AG2 A;  3EH3 A; 
#chains in the Genus database with same CATH homology
 5B1B A;  4G72 A;  1XME A;  4G70 A;  5DJQ A;  4GP4 A;  3X2Q A;  3QJU A;  2EIJ A;  4GP8 A;  4FAA A;  5B1A A;  4G7Q A;  3S8F A;  1AR1 A;  2GSM A;  2Y69 A;  3OM3 A;  1V54 A;  3QJQ A;  3WFE B;  1OCZ A;  1OCC A;  2QPE A;  3OMN A;  2ZXW A;  1EHK A;  3WG7 A;  3WFB B;  3FYE A;  1QLE A;  2EIM A;  2YEV A;  3OMI A;  3OMA A;  1M56 A;  3AG3 A;  3EH4 A;  1M57 A;  1V55 A;  3ABM A;  3WFC B;  4N4Y A;  3ASN A;  3BVD A;  1OCR A;  3EH5 A;  5IY5 A;  3S3C A;  4G71 A;  1OCO A;  3EHB A;  3HB3 A;  2DYS A;  2DYR A;  4G7S A;  4G7R A;  3AYG A;  5B3S A;  3QJT A;  3O0R B;  2EIN A;  4GP5 A;  2EIK A;  3S8G A;  4FA7 A;  1FFT A;  3WFD B;  2QPD A;  3QJV A;  2OCC A;  4XYD A;  3S3D A;  3QJR A;  3QJS A;  3DTU A;  3AG4 A;  3S3B A;  3AG1 A;  2EIL A;  3ABL A;  3ASO A;  3AYF A;  3FYI A;  3ABK A;  3MK7 A;  3AG2 A;  3EH3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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