3EH5A

Structure of the reduced form of cytochrome ba3 oxidase from thermus thermophilus
Total Genus 227
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
227
sequence length
557
structure length
557
Chain Sequence
SEISRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGGRLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
publication title Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 227
structure length 557
sequence length 557
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 3eh5A00
4G70A 3ASNA 4G7SA 1FFTA 4FAAA 4GP5A 3BVDA 2EIMA 2GSMA 3S8FA 3FYIA 3ABLA 3QJTA 3ASOA 3EHBA 3AG4A 2YEVA 3AYGA 3ABMA 1V55A 3EH5A 3OMNA 3WFCB 3AG2A 2Y69A 2DYSA 4N4YA 1M57A 3MK7A 3DTUA 1OCOA 3AYFA 2QPEA 3HB3A 4GP4A 2EINA 2DYRA 3ABKA 5DJQA 4FA7A 2EIJA 3AG1A 3QJQA 1EHKA 3OMAA 1OCRA 3QJSA 2OCCA 1M56A 3WFBB 3WFEB 1OCCA 2ZXWA 3OMIA 3S3DA 2EILA 1XMEA 3WFDB 5B3SA 1OCZA 2QPDA 2EIKA 3QJUA 3FYEA 4G7RA 3AG3A 4G71A 4G7QA 1QLEA 3WG7A 3O0RB 3EH4A 5IY5A 1AR1A 3S3CA 3X2QA 1V54A 5B1AA 3S8GA 3QJVA 3S3BA 4XYDA 5B1BA 3QJRA 4GP8A 3EH3A 3OM3A 4G72A
chains in the Genus database with same CATH superfamily
4G70A 3ASNA 4G7SA 1FFTA 4FAAA 4GP5A 3BVDA 2EIMA 2GSMA 3S8FA 3FYIA 3ABLA 3QJTA 3ASOA 3EHBA 3AG4A 2YEVA 3AYGA 3ABMA 1V55A 3EH5A 3OMNA 3WFCB 3AG2A 2Y69A 2DYSA 4N4YA 1M57A 3MK7A 3DTUA 1OCOA 3AYFA 2QPEA 3HB3A 4GP4A 2EINA 2DYRA 3ABKA 5DJQA 4FA7A 2EIJA 3AG1A 3QJQA 1EHKA 3OMAA 1OCRA 3QJSA 2OCCA 1M56A 3WFBB 3WFEB 1OCCA 2ZXWA 3OMIA 3S3DA 2EILA 1XMEA 3WFDB 5B3SA 1OCZA 2QPDA 2EIKA 3QJUA 3FYEA 4G7RA 3AG3A 4G71A 4G7QA 1QLEA 3WG7A 3O0RB 3EH4A 5IY5A 1AR1A 3S3CA 3X2QA 1V54A 5B1AA 3S8GA 3QJVA 3S3BA 4XYDA 5B1BA 3QJRA 4GP8A 3EH3A 3OM3A 4G72A
chains in the Genus database with same CATH topology
4G70A 3ASNA 4G7SA 1FFTA 4FAAA 4GP5A 3BVDA 2EIMA 2GSMA 3S8FA 3FYIA 3ABLA 3QJTA 3ASOA 3EHBA 3AG4A 2YEVA 3AYGA 3ABMA 1V55A 3EH5A 3OMNA 3WFCB 3AG2A 2Y69A 2DYSA 4N4YA 1M57A 3MK7A 3DTUA 1OCOA 3AYFA 2QPEA 3HB3A 4GP4A 2EINA 2DYRA 3ABKA 5DJQA 4FA7A 2EIJA 3AG1A 3QJQA 1EHKA 3OMAA 1OCRA 3QJSA 2OCCA 1M56A 3WFBB 3WFEB 1OCCA 2ZXWA 3OMIA 3S3DA 2EILA 1XMEA 3WFDB 5B3SA 1OCZA 2QPDA 2EIKA 3QJUA 3FYEA 4G7RA 3AG3A 4G71A 4G7QA 1QLEA 3WG7A 3O0RB 3EH4A 5IY5A 1AR1A 3S3CA 3X2QA 1V54A 5B1AA 3S8GA 3QJVA 3S3BA 4XYDA 5B1BA 3QJRA 4GP8A 3EH3A 3OM3A 4G72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G70 A;  3ASN A;  4G7S A;  1FFT A;  4FAA A;  4GP5 A;  3BVD A;  2EIM A;  2GSM A;  3S8F A;  3FYI A;  3ABL A;  3QJT A;  3ASO A;  3EHB A;  3AG4 A;  2YEV A;  3AYG A;  3ABM A;  1V55 A;  3EH5 A;  3OMN A;  3WFC B;  3AG2 A;  2Y69 A;  2DYS A;  4N4Y A;  1M57 A;  3MK7 A;  3DTU A;  1OCO A;  3AYF A;  2QPE A;  3HB3 A;  4GP4 A;  2EIN A;  2DYR A;  3ABK A;  5DJQ A;  4FA7 A;  2EIJ A;  3AG1 A;  3QJQ A;  1EHK A;  3OMA A;  1OCR A;  3QJS A;  2OCC A;  1M56 A;  3WFB B;  3WFE B;  1OCC A;  2ZXW A;  3OMI A;  3S3D A;  2EIL A;  1XME A;  3WFD B;  5B3S A;  1OCZ A;  2QPD A;  2EIK A;  3QJU A;  3FYE A;  4G7R A;  3AG3 A;  4G71 A;  4G7Q A;  1QLE A;  3WG7 A;  3O0R B;  3EH4 A;  5IY5 A;  1AR1 A;  3S3C A;  3X2Q A;  1V54 A;  5B1A A;  3S8G A;  3QJV A;  3S3B A;  4XYD A;  5B1B A;  3QJR A;  4GP8 A;  3EH3 A;  3OM3 A;  4G72 A; 
#chains in the Genus database with same CATH topology
 4G70 A;  3ASN A;  4G7S A;  1FFT A;  4FAA A;  4GP5 A;  3BVD A;  2EIM A;  2GSM A;  3S8F A;  3FYI A;  3ABL A;  3QJT A;  3ASO A;  3EHB A;  3AG4 A;  2YEV A;  3AYG A;  3ABM A;  1V55 A;  3EH5 A;  3OMN A;  3WFC B;  3AG2 A;  2Y69 A;  2DYS A;  4N4Y A;  1M57 A;  3MK7 A;  3DTU A;  1OCO A;  3AYF A;  2QPE A;  3HB3 A;  4GP4 A;  2EIN A;  2DYR A;  3ABK A;  5DJQ A;  4FA7 A;  2EIJ A;  3AG1 A;  3QJQ A;  1EHK A;  3OMA A;  1OCR A;  3QJS A;  2OCC A;  1M56 A;  3WFB B;  3WFE B;  1OCC A;  2ZXW A;  3OMI A;  3S3D A;  2EIL A;  1XME A;  3WFD B;  5B3S A;  1OCZ A;  2QPD A;  2EIK A;  3QJU A;  3FYE A;  4G7R A;  3AG3 A;  4G71 A;  4G7Q A;  1QLE A;  3WG7 A;  3O0R B;  3EH4 A;  5IY5 A;  1AR1 A;  3S3C A;  3X2Q A;  1V54 A;  5B1A A;  3S8G A;  3QJV A;  3S3B A;  4XYD A;  5B1B A;  3QJR A;  4GP8 A;  3EH3 A;  3OM3 A;  4G72 A; 
#chains in the Genus database with same CATH homology
 4G70 A;  3ASN A;  4G7S A;  1FFT A;  4FAA A;  4GP5 A;  3BVD A;  2EIM A;  2GSM A;  3S8F A;  3FYI A;  3ABL A;  3QJT A;  3ASO A;  3EHB A;  3AG4 A;  2YEV A;  3AYG A;  3ABM A;  1V55 A;  3EH5 A;  3OMN A;  3WFC B;  3AG2 A;  2Y69 A;  2DYS A;  4N4Y A;  1M57 A;  3MK7 A;  3DTU A;  1OCO A;  3AYF A;  2QPE A;  3HB3 A;  4GP4 A;  2EIN A;  2DYR A;  3ABK A;  5DJQ A;  4FA7 A;  2EIJ A;  3AG1 A;  3QJQ A;  1EHK A;  3OMA A;  1OCR A;  3QJS A;  2OCC A;  1M56 A;  3WFB B;  3WFE B;  1OCC A;  2ZXW A;  3OMI A;  3S3D A;  2EIL A;  1XME A;  3WFD B;  5B3S A;  1OCZ A;  2QPD A;  2EIK A;  3QJU A;  3FYE A;  4G7R A;  3AG3 A;  4G71 A;  4G7Q A;  1QLE A;  3WG7 A;  3O0R B;  3EH4 A;  5IY5 A;  1AR1 A;  3S3C A;  3X2Q A;  1V54 A;  5B1A A;  3S8G A;  3QJV A;  3S3B A;  4XYD A;  5B1B A;  3QJR A;  4GP8 A;  3EH3 A;  3OM3 A;  4G72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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