3EH7A

The structure of a putative 4-hydroxybutyrate coa-transferase from porphyromonas gingivalis w83
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
432
structure length
401
Chain Sequence
AMKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFVEIYHMLCLGEGRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 4-hydroxybutyrate CoA-transferase
publication title The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
rcsb
source organism Porphyromonas gingivalis
molecule tags Transferase
total genus 125
structure length 401
sequence length 432
ec nomenclature
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3eh7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A03
3DLXA 1M3EA 1OOYA 2AHVA 2HJ0A 3OXOA 1OOZA 5DBNB 1POIB 1K6DA 3RRLA 3QDQA 3CDKA 1O9LA 2OASA 3D3UA 1OPEA 2NRCA 4KGBA 2NRBA 3RRLB 5DBNA 3GK7A 3CDKB 1POIA 2AHWA 3K6MA 2AHUA 3EH7A 1XR4A
chains in the Genus database with same CATH superfamily
1TILB 2AHVA 2ZO9B 1OOZA 3AGEA 3VSEA 1V0FA 1H4YA 2KA5A 1H4XA 1TH8B 3CDKA 2VY9A 2DXLA 3D3UA 5EZBA 2NRCA 5EUSA 1N6FA 1N6DA 3RRLB 2ZOAA 3CDKB 1POIA 2AHWA 3MGLA 2AHUA 3ZXNA 3OIZA 1T6RA 3DLXA 1M3EA 3GVJA 1VC1A 3IH8A 1J7XA 5EUXA 3OXOA 5DBNB 3GHFA 3AGDA 3F43A 1FC6A 1TIDB 3QDQA 1FC7A 2KLNA 5EUZA 3IHAA 3NY7A 1N6EA 3ZTBA 1BUZA 1WXXA 3V8VA 2B78A 3GVLA 4KGBA 2NRBA 2CWWA 3IH9A 3GK7A 4DMGA 1O9LA 1WXWA 3OIRA 1AUZA 1OOYA 1POIB 1K6DA 4L1CA 2AS0A 3K50A 4L8KA 1SBOA 3DUPA 4XS5A 3GVKA 1V0EA 1BPLA 4DGHA 3V97A 4HIZA 3LDFA 4GHNA 4DGFA 3DJAA 5EUWA 2RRLA 2HJ0A 5EUUA 3JU4A 2DXNA 4QTPA 3RRLA 1H4ZA 1THNB 4AE2A 4AEJA 1FCFA 2OASA 3LLOA 1OPEA 1HF2A 3IF5A 1FC9A 3LKLA 3DORA 3GMFA 5DBNA 1K32A 3MOGA 3T6OA 3D03A 4JC0A 3K6MA 3C0KA 3IHBA 3EH7A 4HYLA 1XR4A
chains in the Genus database with same CATH topology
3DLXA 1M3EA 1OOYA 2AHVA 2HJ0A 3OXOA 1OOZA 5DBNB 1POIB 1K6DA 3RRLA 3QDQA 3CDKA 1O9LA 2OASA 3D3UA 1OPEA 2NRCA 4KGBA 2NRBA 3RRLB 5DBNA 3GK7A 3CDKB 1POIA 2AHWA 3K6MA 2AHUA 3EH7A 1XR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLX A;  1M3E A;  1OOY A;  2AHV A;  2HJ0 A;  3OXO A;  1OOZ A;  5DBN B;  1POI B;  1K6D A;  3RRL A;  3QDQ A;  3CDK A;  1O9L A;  2OAS A;  3D3U A;  1OPE A;  2NRC A;  4KGB A;  2NRB A;  3RRL B;  5DBN A;  3GK7 A;  3CDK B;  1POI A;  2AHW A;  3K6M A;  2AHU A;  3EH7 A;  1XR4 A; 
#chains in the Genus database with same CATH topology
 1TIL B;  2AHV A;  2ZO9 B;  1OOZ A;  3AGE A;  3VSE A;  1V0F A;  1H4Y A;  2KA5 A;  1H4X A;  1TH8 B;  3CDK A;  2VY9 A;  2DXL A;  3D3U A;  5EZB A;  2NRC A;  5EUS A;  1N6F A;  1N6D A;  3RRL B;  2ZOA A;  3CDK B;  1POI A;  2AHW A;  3MGL A;  2AHU A;  3ZXN A;  3OIZ A;  1T6R A;  3DLX A;  1M3E A;  3GVJ A;  1VC1 A;  3IH8 A;  1J7X A;  5EUX A;  3OXO A;  5DBN B;  3GHF A;  3AGD A;  3F43 A;  1FC6 A;  1TID B;  3QDQ A;  1FC7 A;  2KLN A;  5EUZ A;  3IHA A;  3NY7 A;  1N6E A;  3ZTB A;  1BUZ A;  1WXX A;  3V8V A;  2B78 A;  3GVL A;  4KGB A;  2NRB A;  2CWW A;  3IH9 A;  3GK7 A;  4DMG A;  1O9L A;  1WXW A;  3OIR A;  1AUZ A;  1OOY A;  1POI B;  1K6D A;  4L1C A;  2AS0 A;  3K50 A;  4L8K A;  1SBO A;  3DUP A;  4XS5 A;  3GVK A;  1V0E A;  1BPL A;  4DGH A;  3V97 A;  4HIZ A;  3LDF A;  4GHN A;  4DGF A;  3DJA A;  5EUW A;  2RRL A;  2HJ0 A;  5EUU A;  3JU4 A;  2DXN A;  4QTP A;  3RRL A;  1H4Z A;  1THN B;  4AE2 A;  4AEJ A;  1FCF A;  2OAS A;  3LLO A;  1OPE A;  1HF2 A;  3IF5 A;  1FC9 A;  3LKL A;  3DOR A;  3GMF A;  5DBN A;  1K32 A;  3MOG A;  3T6O A;  3D03 A;  4JC0 A;  3K6M A;  3C0K A;  3IHB A;  3EH7 A;  4HYL A;  1XR4 A; 
#chains in the Genus database with same CATH homology
 3DLX A;  1M3E A;  1OOY A;  2AHV A;  2HJ0 A;  3OXO A;  1OOZ A;  5DBN B;  1POI B;  1K6D A;  3RRL A;  3QDQ A;  3CDK A;  1O9L A;  2OAS A;  3D3U A;  1OPE A;  2NRC A;  4KGB A;  2NRB A;  3RRL B;  5DBN A;  3GK7 A;  3CDK B;  1POI A;  2AHW A;  3K6M A;  2AHU A;  3EH7 A;  1XR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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