3EH7A

The structure of a putative 4-hydroxybutyrate coa-transferase from porphyromonas gingivalis w83
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
432
structure length
401
Chain Sequence
b'AMKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFVEIYHMLCLGEGRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 4-hydroxybutyrate CoA-transferase
publication title The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
rcsb
source organism Porphyromonas gingivalis
molecule tags Transferase
total genus 125
structure length 401
sequence length 432
ec nomenclature
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3eh7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3eh7A03
3DLXA 1POIB 3CDKB 5DBNA 4KGBA 2AHWA 3GK7A 3D3UA 2HJ0A 3CDKA 1POIA 2NRCA 1XR4A 1K6DA 3K6MA 3EH7A 2AHUA 1OOYA 2AHVA 3RRLB 3QDQA 2NRBA 3OXOA 1OPEA 1M3EA 1O9LA 5DBNB 3RRLA 1OOZA 2OASA
chains in the Genus database with same CATH superfamily
3DLXA 5DBNA 4QTPA 3F43A 1T6RA 3GK7A 1TIDB 3GVKA 3D3UA 2HJ0A 3K6MA 1N6EA 3T6OA 2AHUA 1N6FA 5EUWA 1VC1A 1N6DA 3LDFA 3V8VA 1K32A 3LKLA 4XS5A 4L8KA 1AUZA 1M3EA 5DBNB 3JU4A 3MOGA 3OIRA 3V97A 2RRLA 1POIA 1XR4A 4DGHA 4JC0A 1FC7A 1H4XA 1K6DA 5EUSA 2B78A 3EH7A 3IHBA 1J7XA 3OIZA 1BUZA 3MGLA 3D03A 1OPEA 3IF5A 1O9LA 2VY9A 1WXXA 1THNB 2OASA 4DGFA 2ZO9B 1POIB 1SBOA 1WXWA 2AHWA 5EUUA 3CDKA 4HYLA 3IH8A 3GVLA 2DXNA 3NY7A 3GMFA 3IH9A 1FC9A 1OOYA 5EZBA 1HF2A 2AHVA 2KLNA 1V0EA 3AGEA 3QDQA 5EUZA 2NRBA 3OXOA 1H4ZA 3RRLA 3IHAA 1FCFA 2ZOAA 1OOZA 4HIZA 4AE2A 3K50A 2KA5A 3CDKB 3DJAA 1TH8B 3ZTBA 4KGBA 3C0KA 2CWWA 2NRCA 4DMGA 1FC6A 3ZXNA 3GHFA 3AGDA 3DORA 4GHNA 4AEJA 3LLOA 1V0FA 1H4YA 2DXLA 3RRLB 2AS0A 1TILB 1BPLA 4L1CA 3GVJA 3DUPA 5EUXA 3VSEA
chains in the Genus database with same CATH topology
3DLXA 1POIB 3CDKB 5DBNA 4KGBA 2AHWA 3GK7A 3D3UA 2HJ0A 3CDKA 1POIA 2NRCA 1XR4A 1K6DA 3K6MA 3EH7A 2AHUA 1OOYA 2AHVA 3RRLB 3QDQA 2NRBA 3OXOA 1OPEA 1M3EA 1O9LA 5DBNB 3RRLA 1OOZA 2OASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLX A;  1POI B;  3CDK B;  5DBN A;  4KGB A;  2AHW A;  3GK7 A;  3D3U A;  2HJ0 A;  3CDK A;  1POI A;  2NRC A;  1XR4 A;  1K6D A;  3K6M A;  3EH7 A;  2AHU A;  1OOY A;  2AHV A;  3RRL B;  3QDQ A;  2NRB A;  3OXO A;  1OPE A;  1M3E A;  1O9L A;  5DBN B;  3RRL A;  1OOZ A;  2OAS A; 
#chains in the Genus database with same CATH topology
 3DLX A;  5DBN A;  4QTP A;  3F43 A;  1T6R A;  3GK7 A;  1TID B;  3GVK A;  3D3U A;  2HJ0 A;  3K6M A;  1N6E A;  3T6O A;  2AHU A;  1N6F A;  5EUW A;  1VC1 A;  1N6D A;  3LDF A;  3V8V A;  1K32 A;  3LKL A;  4XS5 A;  4L8K A;  1AUZ A;  1M3E A;  5DBN B;  3JU4 A;  3MOG A;  3OIR A;  3V97 A;  2RRL A;  1POI A;  1XR4 A;  4DGH A;  4JC0 A;  1FC7 A;  1H4X A;  1K6D A;  5EUS A;  2B78 A;  3EH7 A;  3IHB A;  1J7X A;  3OIZ A;  1BUZ A;  3MGL A;  3D03 A;  1OPE A;  3IF5 A;  1O9L A;  2VY9 A;  1WXX A;  1THN B;  2OAS A;  4DGF A;  2ZO9 B;  1POI B;  1SBO A;  1WXW A;  2AHW A;  5EUU A;  3CDK A;  4HYL A;  3IH8 A;  3GVL A;  2DXN A;  3NY7 A;  3GMF A;  3IH9 A;  1FC9 A;  1OOY A;  5EZB A;  1HF2 A;  2AHV A;  2KLN A;  1V0E A;  3AGE A;  3QDQ A;  5EUZ A;  2NRB A;  3OXO A;  1H4Z A;  3RRL A;  3IHA A;  1FCF A;  2ZOA A;  1OOZ A;  4HIZ A;  4AE2 A;  3K50 A;  2KA5 A;  3CDK B;  3DJA A;  1TH8 B;  3ZTB A;  4KGB A;  3C0K A;  2CWW A;  2NRC A;  4DMG A;  1FC6 A;  3ZXN A;  3GHF A;  3AGD A;  3DOR A;  4GHN A;  4AEJ A;  3LLO A;  1V0F A;  1H4Y A;  2DXL A;  3RRL B;  2AS0 A;  1TIL B;  1BPL A;  4L1C A;  3GVJ A;  3DUP A;  5EUX A;  3VSE A; 
#chains in the Genus database with same CATH homology
 3DLX A;  1POI B;  3CDK B;  5DBN A;  4KGB A;  2AHW A;  3GK7 A;  3D3U A;  2HJ0 A;  3CDK A;  1POI A;  2NRC A;  1XR4 A;  1K6D A;  3K6M A;  3EH7 A;  2AHU A;  1OOY A;  2AHV A;  3RRL B;  3QDQ A;  2NRB A;  3OXO A;  1OPE A;  1M3E A;  1O9L A;  5DBN B;  3RRL A;  1OOZ A;  2OAS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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