3EH8A

Crystal structure of y2 i-anii variant (f13y/s111y)/dna complex with calcium
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
254
structure length
254
Chain Sequence
GSDLTYAYLVGLYEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSKILPIFEKYPMFSNKQYDYLRFRNALLSGIIYLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDDDYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYKLWLKQLRKISRYSEKIKIPSNY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Intron-encoded DNA endonuclease I-AniI
publication title Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation.
pubmed doi rcsb
source organism Emericella nidulans
total genus 70
structure length 254
sequence length 254
chains with identical sequence D, G
ec nomenclature ec 3.1.-.-:
pdb deposition date 2008-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3eh8A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3eh8A02
5A78A 3FD2A 3MIPA 3MXAA 4UN8G 2DCHX 3HYJA 3C0WA 5AKNA 1JVAA 4Z20A 4UNAA 1G9YA 5A0WA 1N3FA 3C0XA 3OOLA 3MXBA 4UN9G 4UT0A 1LWTA 2QOJZ 1U0CA 4AQXA 3E54A 1P8KZ 1G9ZA 1M5XA 1DFAA 5E5SA 1EF0A 4AQUA 5A72A 5E67A 2EX5A 5E63A 4AABA 2VBOA 4UN7A 5AKFA 4D6OA 1U0DA 2VS7A 2VBNA 5A0MA 3OORA 4UN9A 4YITA 2VS8A 4LQ0A 4LOXA 2VBJA 3UVFA 4UN8A 3MX9A 2FLDA 4AADA 2VBOB 3R7PA 5E5OA 4D6NA 2I3QA 4Z1XA 3EH8A 5AKMA 2XE0A 4YISA 1B24A 4UNBA 3HYIA 1T9IA 5A74A 1LWSA 3MXBB 2VBLA 5A0MB 4EFJA 3QQYA 2AB5A 3KO2A 2VBJB 1MOWA 4AAGA 5A77A 1DQ3A 5AK9A 1R7MA 2O7MA 1UM2A 4UNCA 1AF5A 4YHXA 1VDEA 4AAFA 2XE0B 1BP7A 4UN7G 2I3PA 3MISA 2VBLB 2CW7A 1T9JA 1N3EA 2CW8A 4AAEA 2VBNB 4Z1ZA
chains in the Genus database with same CATH superfamily
5A78A 3FD2A 3MIPA 3MXAA 4UN8G 2DCHX 3HYJA 3C0WA 5AKNA 1JVAA 4Z20A 4UNAA 1G9YA 5A0WA 1N3FA 3C0XA 3OOLA 3MXBA 4UN9G 4UT0A 1LWTA 2QOJZ 1U0CA 4AQXA 3E54A 1P8KZ 1G9ZA 1M5XA 1DFAA 5E5SA 1EF0A 4AQUA 5A72A 5E67A 2EX5A 5E63A 4AABA 2VBOA 4UN7A 5AKFA 4D6OA 1U0DA 2VS7A 2VBNA 5A0MA 3OORA 4UN9A 4YITA 2VS8A 4LQ0A 4LOXA 2VBJA 4KZSA 3UVFA 4UN8A 3MX9A 2FLDA 4AADA 2VBOB 3R7PA 5E5OA 4D6NA 2I3QA 4Z1XA 3EH8A 5AKMA 2XE0A 4YISA 1B24A 4UNBA 3HYIA 1T9IA 5A74A 1LWSA 3MXBB 2VBLA 5A0MB 4EFJA 3QQYA 2AB5A 3KO2A 2VBJB 1MOWA 4AAGA 5A77A 2F4LA 1DQ3A 5AK9A 1R7MA 2O7MA 1UM2A 4UNCA 1AF5A 4YHXA 1VDEA 4AAFA 2XE0B 1BP7A 4UN7G 2I3PA 3MISA 2VBLB 2CW7A 1T9JA 1N3EA 2CW8A 4AAEA 2VBNB 4Z1ZA
chains in the Genus database with same CATH topology
5A78A 3FD2A 3MIPA 3MXAA 4UN8G 2DCHX 3HYJA 3C0WA 5AKNA 1JVAA 4Z20A 4UNAA 1G9YA 5A0WA 1N3FA 3C0XA 3OOLA 3MXBA 4UN9G 4UT0A 1LWTA 2QOJZ 1U0CA 4AQXA 3E54A 1P8KZ 1G9ZA 1M5XA 1DFAA 5E5SA 1EF0A 4AQUA 5A72A 5E67A 2EX5A 5E63A 4AABA 2VBOA 4UN7A 5AKFA 4D6OA 1U0DA 2VS7A 2VBNA 5A0MA 3OORA 4UN9A 4YITA 2VS8A 4LQ0A 4LOXA 2VBJA 3UVFA 4UN8A 3MX9A 2FLDA 4AADA 2VBOB 3R7PA 5E5OA 4D6NA 2I3QA 4Z1XA 3EH8A 5AKMA 2XE0A 4YISA 1B24A 4UNBA 3HYIA 1T9IA 5A74A 1LWSA 3MXBB 2VBLA 5A0MB 4EFJA 3QQYA 2AB5A 3KO2A 2VBJB 1MOWA 4AAGA 5A77A 1DQ3A 5AK9A 1R7MA 2O7MA 1UM2A 4UNCA 1AF5A 4YHXA 1VDEA 4AAFA 2XE0B 1BP7A 4UN7G 2I3PA 3MISA 2VBLB 2CW7A 1T9JA 1N3EA 2CW8A 4AAEA 2VBNB 4Z1ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A78 A;  3FD2 A;  3MIP A;  3MXA A;  4UN8 G;  2DCH X;  3HYJ A;  3C0W A;  5AKN A;  1JVA A;  4Z20 A;  4UNA A;  1G9Y A;  5A0W A;  1N3F A;  3C0X A;  3OOL A;  3MXB A;  4UN9 G;  4UT0 A;  1LWT A;  2QOJ Z;  1U0C A;  4AQX A;  3E54 A;  1P8K Z;  1G9Z A;  1M5X A;  1DFA A;  5E5S A;  1EF0 A;  4AQU A;  5A72 A;  5E67 A;  2EX5 A;  5E63 A;  4AAB A;  2VBO A;  4UN7 A;  5AKF A;  4D6O A;  1U0D A;  2VS7 A;  2VBN A;  5A0M A;  3OOR A;  4UN9 A;  4YIT A;  2VS8 A;  4LQ0 A;  4LOX A;  2VBJ A;  3UVF A;  4UN8 A;  3MX9 A;  2FLD A;  4AAD A;  2VBO B;  3R7P A;  5E5O A;  4D6N A;  2I3Q A;  4Z1X A;  3EH8 A;  5AKM A;  2XE0 A;  4YIS A;  1B24 A;  4UNB A;  3HYI A;  1T9I A;  5A74 A;  1LWS A;  3MXB B;  2VBL A;  5A0M B;  4EFJ A;  3QQY A;  2AB5 A;  3KO2 A;  2VBJ B;  1MOW A;  4AAG A;  5A77 A;  1DQ3 A;  5AK9 A;  1R7M A;  2O7M A;  1UM2 A;  4UNC A;  1AF5 A;  4YHX A;  1VDE A;  4AAF A;  2XE0 B;  1BP7 A;  4UN7 G;  2I3P A;  3MIS A;  2VBL B;  2CW7 A;  1T9J A;  1N3E A;  2CW8 A;  4AAE A;  2VBN B;  4Z1Z A; 
#chains in the Genus database with same CATH topology
 5A78 A;  3FD2 A;  3MIP A;  3MXA A;  4UN8 G;  2DCH X;  3HYJ A;  3C0W A;  5AKN A;  1JVA A;  4Z20 A;  4UNA A;  1G9Y A;  5A0W A;  1N3F A;  3C0X A;  3OOL A;  3MXB A;  4UN9 G;  4UT0 A;  1LWT A;  2QOJ Z;  1U0C A;  4AQX A;  3E54 A;  1P8K Z;  1G9Z A;  1M5X A;  1DFA A;  5E5S A;  1EF0 A;  4AQU A;  5A72 A;  5E67 A;  2EX5 A;  5E63 A;  4AAB A;  2VBO A;  4UN7 A;  5AKF A;  4D6O A;  1U0D A;  2VS7 A;  2VBN A;  5A0M A;  3OOR A;  4UN9 A;  4YIT A;  2VS8 A;  4LQ0 A;  4LOX A;  2VBJ A;  4KZS A;  3UVF A;  4UN8 A;  3MX9 A;  2FLD A;  4AAD A;  2VBO B;  3R7P A;  5E5O A;  4D6N A;  2I3Q A;  4Z1X A;  3EH8 A;  5AKM A;  2XE0 A;  4YIS A;  1B24 A;  4UNB A;  3HYI A;  1T9I A;  5A74 A;  1LWS A;  3MXB B;  2VBL A;  5A0M B;  4EFJ A;  3QQY A;  2AB5 A;  3KO2 A;  2VBJ B;  1MOW A;  4AAG A;  5A77 A;  2F4L A;  1DQ3 A;  5AK9 A;  1R7M A;  2O7M A;  1UM2 A;  4UNC A;  1AF5 A;  4YHX A;  1VDE A;  4AAF A;  2XE0 B;  1BP7 A;  4UN7 G;  2I3P A;  3MIS A;  2VBL B;  2CW7 A;  1T9J A;  1N3E A;  2CW8 A;  4AAE A;  2VBN B;  4Z1Z A; 
#chains in the Genus database with same CATH homology
 5A78 A;  3FD2 A;  3MIP A;  3MXA A;  4UN8 G;  2DCH X;  3HYJ A;  3C0W A;  5AKN A;  1JVA A;  4Z20 A;  4UNA A;  1G9Y A;  5A0W A;  1N3F A;  3C0X A;  3OOL A;  3MXB A;  4UN9 G;  4UT0 A;  1LWT A;  2QOJ Z;  1U0C A;  4AQX A;  3E54 A;  1P8K Z;  1G9Z A;  1M5X A;  1DFA A;  5E5S A;  1EF0 A;  4AQU A;  5A72 A;  5E67 A;  2EX5 A;  5E63 A;  4AAB A;  2VBO A;  4UN7 A;  5AKF A;  4D6O A;  1U0D A;  2VS7 A;  2VBN A;  5A0M A;  3OOR A;  4UN9 A;  4YIT A;  2VS8 A;  4LQ0 A;  4LOX A;  2VBJ A;  3UVF A;  4UN8 A;  3MX9 A;  2FLD A;  4AAD A;  2VBO B;  3R7P A;  5E5O A;  4D6N A;  2I3Q A;  4Z1X A;  3EH8 A;  5AKM A;  2XE0 A;  4YIS A;  1B24 A;  4UNB A;  3HYI A;  1T9I A;  5A74 A;  1LWS A;  3MXB B;  2VBL A;  5A0M B;  4EFJ A;  3QQY A;  2AB5 A;  3KO2 A;  2VBJ B;  1MOW A;  4AAG A;  5A77 A;  1DQ3 A;  5AK9 A;  1R7M A;  2O7M A;  1UM2 A;  4UNC A;  1AF5 A;  4YHX A;  1VDE A;  4AAF A;  2XE0 B;  1BP7 A;  4UN7 G;  2I3P A;  3MIS A;  2VBL B;  2CW7 A;  1T9J A;  1N3E A;  2CW8 A;  4AAE A;  2VBN B;  4Z1Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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