3EJFA

Crystal structure of ibv x-domain at ph 8.5
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
166
structure length
166
Chain Sequence
KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Non-structural protein 3
publication title Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property.
pubmed doi rcsb
source organism Avian infectious bronchitis virus (strain beaudette)
total genus 50
structure length 166
sequence length 166
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3ejfA00
2BFQA 1LANA 3IJ3A 5E3BA 4KYBA 5FSUA 2J9AA 1HJZA 2FG1A 5AILA 3H8GA 2VRIA 3IIFA 3H8EA 3EW5A 2BFRA 5CB3A 4J4ZA 1BPMA 5FSXA 1LAPA 1VHUA 3SIJA 3EKEA 5FSVA 4JCAA 3Q6ZA 3IIDA 3ETIA 4ZY2A 3V2BA 4ZI6A 3PEIA 4K0CA 5FSYA 4J5RA 4D86A 4TU0A 5HIHA 1GYTA 5CB5A 4ZY0A 1BLLE 3VFQA 1NJRA 1ZR3A 3SIGA 4KSIA 4R76A 4IQYA 3EWQA 3EWRA 4ABLA 3GQEA 2EEEA 3EJFA 3EWOA 3T8WA 3SIIA 4J5QA 3GQOA 4ESSA 1LCPA 3KQZA 3KZWA 4K3NA 3GPOA 3KQXA 5HOLA 4ETKA 2L8RA 4R6TA 3GPQA 3EJGA 2AFCA 3KR5A 1TXZA 4JLLA 5D8NA 5DUSA 3JRUA 2DX6A 1TY8A 4ZX9A 1LAMA 5CBMA 2FAVA 3KR4A 3SIHA 4ETJA 2ACFA 5CMSA 4ZX8A 2FXKA 4GVVA 4J5SA 3GPGA 4GUAA 3JZTA 4JVVA 2X47A 4ZY1A 4UMLA 3V45A 1YD9A 4JGKA 5FSZA 1ZR5A 4ABKA 2LGRA 4R7MA 1BPNA 3Q71A 4GVWA 1SPVA 4ZYQA 3EWPA 2XD7A 4X2TA 2EWBA 3H8FA
chains in the Genus database with same CATH superfamily
2BFQA 1LANA 2JZFA 3IJ3A 5E3BA 4KYBA 5FSUA 2J9AA 1HJZA 2FG1A 5AILA 3H8GA 2VRIA 3IIFA 3H8EA 2KQVA 3EW5A 2BFRA 5CB3A 4J4ZA 1BPMA 5FSXA 1LAPA 1VHUA 3SIJA 3EKEA 5FSVA 4JCAA 3Q6ZA 3IIDA 3ETIA 4ZY2A 3V2BA 4ZI6A 3PEIA 4K0CA 5FSYA 4J5RA 4D86A 4TU0A 5HIHA 1GYTA 5CB5A 4ZY0A 1BLLE 3VFQA 1NJRA 1ZR3A 3SIGA 4KSIA 4R76A 4IQYA 3EWQA 3EWRA 4ABLA 3GQEA 2RNKA 2EEEA 3EJFA 3EWOA 3T8WA 3SIIA 4J5QA 3GQOA 4ESSA 1LCPA 3KQZA 3KZWA 4K3NA 3GPOA 3KQXA 5HOLA 4ETKA 2WCTA 2L8RA 4R6TA 3GPQA 3EJGA 2AFCA 3KR5A 1TXZA 4JLLA 5D8NA 5DUSA 3JRUA 2DX6A 1TY8A 4ZX9A 1LAMA 5CBMA 2FAVA 3KR4A 3SIHA 4ETJA 2ACFA 5CMSA 4ZX8A 2FXKA 2W2GA 4GVVA 4J5SA 3GPGA 4GUAA 3JZTA 4JVVA 2X47A 4ZY1A 4UMLA 3V45A 1YD9A 4JGKA 5FSZA 1ZR5A 4ABKA 2LGRA 4R7MA 1BPNA 2JZEA 3Q71A 4GVWA 1SPVA 2JZDA 4ZYQA 3EWPA 2XD7A 4X2TA 2EWBA 3H8FA
chains in the Genus database with same CATH topology
2BFQA 1LANA 3IJ3A 5E3BA 4KYBA 5FSUA 2J9AA 1HJZA 2FG1A 5AILA 3H8GA 2VRIA 3IIFA 3H8EA 3EW5A 2BFRA 5CB3A 4J4ZA 1BPMA 5FSXA 1LAPA 1VHUA 3SIJA 3EKEA 5FSVA 4JCAA 3Q6ZA 3IIDA 3ETIA 4ZY2A 3V2BA 4ZI6A 3PEIA 4K0CA 5FSYA 4J5RA 4D86A 4TU0A 5HIHA 1GYTA 5CB5A 4ZY0A 1BLLE 3VFQA 1NJRA 1ZR3A 3SIGA 4KSIA 4R76A 4IQYA 3EWQA 3EWRA 4ABLA 3GQEA 2EEEA 3EJFA 3EWOA 3T8WA 3SIIA 4J5QA 3GQOA 4ESSA 1LCPA 3KQZA 3KZWA 4K3NA 3GPOA 3KQXA 5HOLA 4ETKA 2L8RA 4R6TA 3GPQA 3EJGA 2AFCA 3KR5A 1TXZA 4JLLA 5D8NA 5DUSA 3JRUA 2DX6A 1TY8A 4ZX9A 1LAMA 5CBMA 2FAVA 3KR4A 3SIHA 4ETJA 2ACFA 5CMSA 4ZX8A 2FXKA 4GVVA 4J5SA 3GPGA 4GUAA 3JZTA 4JVVA 2X47A 4ZY1A 4UMLA 3V45A 1YD9A 4JGKA 5FSZA 1ZR5A 4ABKA 2LGRA 4R7MA 1BPNA 3Q71A 4GVWA 1SPVA 4ZYQA 3EWPA 2XD7A 4X2TA 2EWBA 3H8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BFQ A;  1LAN A;  3IJ3 A;  5E3B A;  4KYB A;  5FSU A;  2J9A A;  1HJZ A;  2FG1 A;  5AIL A;  3H8G A;  2VRI A;  3IIF A;  3H8E A;  3EW5 A;  2BFR A;  5CB3 A;  4J4Z A;  1BPM A;  5FSX A;  1LAP A;  1VHU A;  3SIJ A;  3EKE A;  5FSV A;  4JCA A;  3Q6Z A;  3IID A;  3ETI A;  4ZY2 A;  3V2B A;  4ZI6 A;  3PEI A;  4K0C A;  5FSY A;  4J5R A;  4D86 A;  4TU0 A;  5HIH A;  1GYT A;  5CB5 A;  4ZY0 A;  1BLL E;  3VFQ A;  1NJR A;  1ZR3 A;  3SIG A;  4KSI A;  4R76 A;  4IQY A;  3EWQ A;  3EWR A;  4ABL A;  3GQE A;  2EEE A;  3EJF A;  3EWO A;  3T8W A;  3SII A;  4J5Q A;  3GQO A;  4ESS A;  1LCP A;  3KQZ A;  3KZW A;  4K3N A;  3GPO A;  3KQX A;  5HOL A;  4ETK A;  2L8R A;  4R6T A;  3GPQ A;  3EJG A;  2AFC A;  3KR5 A;  1TXZ A;  4JLL A;  5D8N A;  5DUS A;  3JRU A;  2DX6 A;  1TY8 A;  4ZX9 A;  1LAM A;  5CBM A;  2FAV A;  3KR4 A;  3SIH A;  4ETJ A;  2ACF A;  5CMS A;  4ZX8 A;  2FXK A;  4GVV A;  4J5S A;  3GPG A;  4GUA A;  3JZT A;  4JVV A;  2X47 A;  4ZY1 A;  4UML A;  3V45 A;  1YD9 A;  4JGK A;  5FSZ A;  1ZR5 A;  4ABK A;  2LGR A;  4R7M A;  1BPN A;  3Q71 A;  4GVW A;  1SPV A;  4ZYQ A;  3EWP A;  2XD7 A;  4X2T A;  2EWB A;  3H8F A; 
#chains in the Genus database with same CATH topology
 2BFQ A;  1LAN A;  2JZF A;  3IJ3 A;  5E3B A;  4KYB A;  5FSU A;  2J9A A;  1HJZ A;  2FG1 A;  5AIL A;  3H8G A;  2VRI A;  3IIF A;  3H8E A;  2KQV A;  3EW5 A;  2BFR A;  5CB3 A;  4J4Z A;  1BPM A;  5FSX A;  1LAP A;  1VHU A;  3SIJ A;  3EKE A;  5FSV A;  4JCA A;  3Q6Z A;  3IID A;  3ETI A;  4ZY2 A;  3V2B A;  4ZI6 A;  3PEI A;  4K0C A;  5FSY A;  4J5R A;  4D86 A;  4TU0 A;  5HIH A;  1GYT A;  5CB5 A;  4ZY0 A;  1BLL E;  3VFQ A;  1NJR A;  1ZR3 A;  3SIG A;  4KSI A;  4R76 A;  4IQY A;  3EWQ A;  3EWR A;  4ABL A;  3GQE A;  2RNK A;  2EEE A;  3EJF A;  3EWO A;  3T8W A;  3SII A;  4J5Q A;  3GQO A;  4ESS A;  1LCP A;  3KQZ A;  3KZW A;  4K3N A;  3GPO A;  3KQX A;  5HOL A;  4ETK A;  2WCT A;  2L8R A;  4R6T A;  3GPQ A;  3EJG A;  2AFC A;  3KR5 A;  1TXZ A;  4JLL A;  5D8N A;  5DUS A;  3JRU A;  2DX6 A;  1TY8 A;  4ZX9 A;  1LAM A;  5CBM A;  2FAV A;  3KR4 A;  3SIH A;  4ETJ A;  2ACF A;  5CMS A;  4ZX8 A;  2FXK A;  2W2G A;  4GVV A;  4J5S A;  3GPG A;  4GUA A;  3JZT A;  4JVV A;  2X47 A;  4ZY1 A;  4UML A;  3V45 A;  1YD9 A;  4JGK A;  5FSZ A;  1ZR5 A;  4ABK A;  2LGR A;  4R7M A;  1BPN A;  2JZE A;  3Q71 A;  4GVW A;  1SPV A;  2JZD A;  4ZYQ A;  3EWP A;  2XD7 A;  4X2T A;  2EWB A;  3H8F A; 
#chains in the Genus database with same CATH homology
 2BFQ A;  1LAN A;  3IJ3 A;  5E3B A;  4KYB A;  5FSU A;  2J9A A;  1HJZ A;  2FG1 A;  5AIL A;  3H8G A;  2VRI A;  3IIF A;  3H8E A;  3EW5 A;  2BFR A;  5CB3 A;  4J4Z A;  1BPM A;  5FSX A;  1LAP A;  1VHU A;  3SIJ A;  3EKE A;  5FSV A;  4JCA A;  3Q6Z A;  3IID A;  3ETI A;  4ZY2 A;  3V2B A;  4ZI6 A;  3PEI A;  4K0C A;  5FSY A;  4J5R A;  4D86 A;  4TU0 A;  5HIH A;  1GYT A;  5CB5 A;  4ZY0 A;  1BLL E;  3VFQ A;  1NJR A;  1ZR3 A;  3SIG A;  4KSI A;  4R76 A;  4IQY A;  3EWQ A;  3EWR A;  4ABL A;  3GQE A;  2EEE A;  3EJF A;  3EWO A;  3T8W A;  3SII A;  4J5Q A;  3GQO A;  4ESS A;  1LCP A;  3KQZ A;  3KZW A;  4K3N A;  3GPO A;  3KQX A;  5HOL A;  4ETK A;  2L8R A;  4R6T A;  3GPQ A;  3EJG A;  2AFC A;  3KR5 A;  1TXZ A;  4JLL A;  5D8N A;  5DUS A;  3JRU A;  2DX6 A;  1TY8 A;  4ZX9 A;  1LAM A;  5CBM A;  2FAV A;  3KR4 A;  3SIH A;  4ETJ A;  2ACF A;  5CMS A;  4ZX8 A;  2FXK A;  4GVV A;  4J5S A;  3GPG A;  4GUA A;  3JZT A;  4JVV A;  2X47 A;  4ZY1 A;  4UML A;  3V45 A;  1YD9 A;  4JGK A;  5FSZ A;  1ZR5 A;  4ABK A;  2LGR A;  4R7M A;  1BPN A;  3Q71 A;  4GVW A;  1SPV A;  4ZYQ A;  3EWP A;  2XD7 A;  4X2T A;  2EWB A;  3H8F A; 
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similar chains in the Genus database (?% sequence similarity)
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