3EKEA

Crystal structure of ibv x-domain at ph 5.6
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
171
structure length
171
Chain Sequence
ATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property.
pubmed doi rcsb
molecule tags Hydrolase
source organism Avian infectious bronchitis virus (strain beaudette)
molecule keywords Non-structural protein 3
total genus 51
structure length 171
sequence length 171
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3ekeA00
5FSYA 2L8RA 1VHUA 3GQEA 1TY8A 1LCPA 4UMLA 1ZR5A 3SIJA 3SIHA 4R6TA 3Q71A 3H8FA 4J5RA 3T8WA 3GPQA 4J5SA 2AFCA 5D8NA 2ACFA 5FSUA 1LAPA 2J9AA 4GUAA 4GVVA 3EWPA 2BFQA 1YD9A 3EWQA 5CB5A 4R76A 2EWBA 5AILA 3KR5A 1SPVA 2LGRA 3EWRA 5CB3A 3GQOA 3SIIA 4IQYA 4ZY2A 3V45A 2FXKA 3EJFA 3H8EA 3EJGA 5E3BA 4ETJA 3V2BA 4ZI6A 4ESSA 1BLLE 2FG1A 5HOLA 3IIDA 1BPNA 1ZR3A 2VRIA 3PEIA 4JVVA 5CMSA 4KSIA 2BFRA 3EKEA 4JGKA 4X2TA 3ETIA 3VFQA 1LANA 4JCAA 3IIFA 3KZWA 4KYBA 3IJ3A 5DUSA 2XD7A 1LAMA 1BPMA 3KQXA 3Q6ZA 3JRUA 4ZX9A 4ZX8A 3GPOA 4GVWA 4ETKA 4ZY1A 2X47A 5FSVA 2FAVA 4J4ZA 4K3NA 4ZYQA 1HJZA 1GYTA 3JZTA 5FSXA 3SIGA 4R7MA 5FSZA 4TU0A 4D86A 3KQZA 2EEEA 3KR4A 3EWOA 5HIHA 5CBMA 1TXZA 3H8GA 4JLLA 4ABLA 4K0CA 2DX6A 3GPGA 4J5QA 1NJRA 3EW5A 4ZY0A 4ABKA
chains in the Genus database with same CATH superfamily
2RNKA 5FSYA 2L8RA 1VHUA 3GQEA 1TY8A 1LCPA 4UMLA 1ZR5A 2W2GA 3SIJA 3SIHA 4R6TA 3Q71A 3H8FA 4J5RA 3T8WA 3GPQA 4J5SA 2AFCA 5D8NA 2ACFA 5FSUA 1LAPA 2J9AA 4GUAA 4GVVA 3EWPA 2BFQA 1YD9A 3EWQA 5CB5A 4R76A 2EWBA 5AILA 3KR5A 1SPVA 2LGRA 3EWRA 5CB3A 3GQOA 3SIIA 4IQYA 4ZY2A 3V45A 2FXKA 3EJFA 3H8EA 3EJGA 5E3BA 4ETJA 3V2BA 4ZI6A 4ESSA 1BLLE 2FG1A 5HOLA 3IIDA 1BPNA 1ZR3A 2VRIA 3PEIA 2JZFA 4JVVA 5CMSA 4KSIA 2BFRA 3EKEA 4JGKA 4X2TA 3ETIA 2KQVA 3VFQA 1LANA 4JCAA 3IIFA 3KZWA 4KYBA 3IJ3A 5DUSA 2XD7A 1LAMA 1BPMA 3KQXA 3Q6ZA 3JRUA 4ZX9A 4ZX8A 3GPOA 4GVWA 4ETKA 4ZY1A 2X47A 5FSVA 2FAVA 4J4ZA 4K3NA 4ZYQA 1HJZA 1GYTA 3JZTA 5FSXA 3SIGA 4R7MA 2JZEA 5FSZA 4TU0A 4D86A 3KQZA 2EEEA 3KR4A 3EWOA 5HIHA 5CBMA 1TXZA 3H8GA 4JLLA 4ABLA 4K0CA 2DX6A 2JZDA 3GPGA 4J5QA 2WCTA 1NJRA 3EW5A 4ZY0A 4ABKA
chains in the Genus database with same CATH topology
5FSYA 2L8RA 1VHUA 3GQEA 1TY8A 1LCPA 4UMLA 1ZR5A 3SIJA 3SIHA 4R6TA 3Q71A 3H8FA 4J5RA 3T8WA 3GPQA 4J5SA 2AFCA 5D8NA 2ACFA 5FSUA 1LAPA 2J9AA 4GUAA 4GVVA 3EWPA 2BFQA 1YD9A 3EWQA 5CB5A 4R76A 2EWBA 5AILA 3KR5A 1SPVA 2LGRA 3EWRA 5CB3A 3GQOA 3SIIA 4IQYA 4ZY2A 3V45A 2FXKA 3EJFA 3H8EA 3EJGA 5E3BA 4ETJA 3V2BA 4ZI6A 4ESSA 1BLLE 2FG1A 5HOLA 3IIDA 1BPNA 1ZR3A 2VRIA 3PEIA 4JVVA 5CMSA 4KSIA 2BFRA 3EKEA 4JGKA 4X2TA 3ETIA 3VFQA 1LANA 4JCAA 3IIFA 3KZWA 4KYBA 3IJ3A 5DUSA 2XD7A 1LAMA 1BPMA 3KQXA 3Q6ZA 3JRUA 4ZX9A 4ZX8A 3GPOA 4GVWA 4ETKA 4ZY1A 2X47A 5FSVA 2FAVA 4J4ZA 4K3NA 4ZYQA 1HJZA 1GYTA 3JZTA 5FSXA 3SIGA 4R7MA 5FSZA 4TU0A 4D86A 3KQZA 2EEEA 3KR4A 3EWOA 5HIHA 5CBMA 1TXZA 3H8GA 4JLLA 4ABLA 4K0CA 2DX6A 3GPGA 4J5QA 1NJRA 3EW5A 4ZY0A 4ABKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FSY A;  2L8R A;  1VHU A;  3GQE A;  1TY8 A;  1LCP A;  4UML A;  1ZR5 A;  3SIJ A;  3SIH A;  4R6T A;  3Q71 A;  3H8F A;  4J5R A;  3T8W A;  3GPQ A;  4J5S A;  2AFC A;  5D8N A;  2ACF A;  5FSU A;  1LAP A;  2J9A A;  4GUA A;  4GVV A;  3EWP A;  2BFQ A;  1YD9 A;  3EWQ A;  5CB5 A;  4R76 A;  2EWB A;  5AIL A;  3KR5 A;  1SPV A;  2LGR A;  3EWR A;  5CB3 A;  3GQO A;  3SII A;  4IQY A;  4ZY2 A;  3V45 A;  2FXK A;  3EJF A;  3H8E A;  3EJG A;  5E3B A;  4ETJ A;  3V2B A;  4ZI6 A;  4ESS A;  1BLL E;  2FG1 A;  5HOL A;  3IID A;  1BPN A;  1ZR3 A;  2VRI A;  3PEI A;  4JVV A;  5CMS A;  4KSI A;  2BFR A;  3EKE A;  4JGK A;  4X2T A;  3ETI A;  3VFQ A;  1LAN A;  4JCA A;  3IIF A;  3KZW A;  4KYB A;  3IJ3 A;  5DUS A;  2XD7 A;  1LAM A;  1BPM A;  3KQX A;  3Q6Z A;  3JRU A;  4ZX9 A;  4ZX8 A;  3GPO A;  4GVW A;  4ETK A;  4ZY1 A;  2X47 A;  5FSV A;  2FAV A;  4J4Z A;  4K3N A;  4ZYQ A;  1HJZ A;  1GYT A;  3JZT A;  5FSX A;  3SIG A;  4R7M A;  5FSZ A;  4TU0 A;  4D86 A;  3KQZ A;  2EEE A;  3KR4 A;  3EWO A;  5HIH A;  5CBM A;  1TXZ A;  3H8G A;  4JLL A;  4ABL A;  4K0C A;  2DX6 A;  3GPG A;  4J5Q A;  1NJR A;  3EW5 A;  4ZY0 A;  4ABK A; 
#chains in the Genus database with same CATH topology
 2RNK A;  5FSY A;  2L8R A;  1VHU A;  3GQE A;  1TY8 A;  1LCP A;  4UML A;  1ZR5 A;  2W2G A;  3SIJ A;  3SIH A;  4R6T A;  3Q71 A;  3H8F A;  4J5R A;  3T8W A;  3GPQ A;  4J5S A;  2AFC A;  5D8N A;  2ACF A;  5FSU A;  1LAP A;  2J9A A;  4GUA A;  4GVV A;  3EWP A;  2BFQ A;  1YD9 A;  3EWQ A;  5CB5 A;  4R76 A;  2EWB A;  5AIL A;  3KR5 A;  1SPV A;  2LGR A;  3EWR A;  5CB3 A;  3GQO A;  3SII A;  4IQY A;  4ZY2 A;  3V45 A;  2FXK A;  3EJF A;  3H8E A;  3EJG A;  5E3B A;  4ETJ A;  3V2B A;  4ZI6 A;  4ESS A;  1BLL E;  2FG1 A;  5HOL A;  3IID A;  1BPN A;  1ZR3 A;  2VRI A;  3PEI A;  2JZF A;  4JVV A;  5CMS A;  4KSI A;  2BFR A;  3EKE A;  4JGK A;  4X2T A;  3ETI A;  2KQV A;  3VFQ A;  1LAN A;  4JCA A;  3IIF A;  3KZW A;  4KYB A;  3IJ3 A;  5DUS A;  2XD7 A;  1LAM A;  1BPM A;  3KQX A;  3Q6Z A;  3JRU A;  4ZX9 A;  4ZX8 A;  3GPO A;  4GVW A;  4ETK A;  4ZY1 A;  2X47 A;  5FSV A;  2FAV A;  4J4Z A;  4K3N A;  4ZYQ A;  1HJZ A;  1GYT A;  3JZT A;  5FSX A;  3SIG A;  4R7M A;  2JZE A;  5FSZ A;  4TU0 A;  4D86 A;  3KQZ A;  2EEE A;  3KR4 A;  3EWO A;  5HIH A;  5CBM A;  1TXZ A;  3H8G A;  4JLL A;  4ABL A;  4K0C A;  2DX6 A;  2JZD A;  3GPG A;  4J5Q A;  2WCT A;  1NJR A;  3EW5 A;  4ZY0 A;  4ABK A; 
#chains in the Genus database with same CATH homology
 5FSY A;  2L8R A;  1VHU A;  3GQE A;  1TY8 A;  1LCP A;  4UML A;  1ZR5 A;  3SIJ A;  3SIH A;  4R6T A;  3Q71 A;  3H8F A;  4J5R A;  3T8W A;  3GPQ A;  4J5S A;  2AFC A;  5D8N A;  2ACF A;  5FSU A;  1LAP A;  2J9A A;  4GUA A;  4GVV A;  3EWP A;  2BFQ A;  1YD9 A;  3EWQ A;  5CB5 A;  4R76 A;  2EWB A;  5AIL A;  3KR5 A;  1SPV A;  2LGR A;  3EWR A;  5CB3 A;  3GQO A;  3SII A;  4IQY A;  4ZY2 A;  3V45 A;  2FXK A;  3EJF A;  3H8E A;  3EJG A;  5E3B A;  4ETJ A;  3V2B A;  4ZI6 A;  4ESS A;  1BLL E;  2FG1 A;  5HOL A;  3IID A;  1BPN A;  1ZR3 A;  2VRI A;  3PEI A;  4JVV A;  5CMS A;  4KSI A;  2BFR A;  3EKE A;  4JGK A;  4X2T A;  3ETI A;  3VFQ A;  1LAN A;  4JCA A;  3IIF A;  3KZW A;  4KYB A;  3IJ3 A;  5DUS A;  2XD7 A;  1LAM A;  1BPM A;  3KQX A;  3Q6Z A;  3JRU A;  4ZX9 A;  4ZX8 A;  3GPO A;  4GVW A;  4ETK A;  4ZY1 A;  2X47 A;  5FSV A;  2FAV A;  4J4Z A;  4K3N A;  4ZYQ A;  1HJZ A;  1GYT A;  3JZT A;  5FSX A;  3SIG A;  4R7M A;  5FSZ A;  4TU0 A;  4D86 A;  3KQZ A;  2EEE A;  3KR4 A;  3EWO A;  5HIH A;  5CBM A;  1TXZ A;  3H8G A;  4JLL A;  4ABL A;  4K0C A;  2DX6 A;  3GPG A;  4J5Q A;  1NJR A;  3EW5 A;  4ZY0 A;  4ABK A; 
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similar chains in the Genus database (?% sequence similarity)
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