3EL6A

Crystal structure of the erythromycin dehydratase
Total Genus 61
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
275
structure length
271
Chain Sequence
DVSALGVRGAEHPLLLAAVDVPGHGGAVFTGRLSTDEQPWLAEHVVGGRTLVPGSVLVDLALAAGEDVGLPVLEELVLQRPLVLAGAGALLRMSVGAPDESGRRTIDVHAAEDVADLADAQWSQHATGTLAQGVAAGPRDTEQWPPEDAVRIPLDDHYDGLAEQGYEYGPSFQALRAAWRKDDSVYAEVSIAADEEGYAFHPVLLDAVAQTLSLGALGEKLPFAWNTVTLHASGATSVRVVATPAGADAMALRVTDPAGHLVATVDSLVVR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords Erythromycin dehydratase
publication title Crystal structure of the erythromycin polyketide synthase dehydratase.
pubmed doi rcsb
source organism Saccharopolyspora erythraea
total genus 61
structure length 271
sequence length 275
ec nomenclature ec 2.3.1.94: 6-deoxyerythronolide-B synthase.
pdb deposition date 2008-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14765 PS-DH Polyketide synthase dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.110 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 3el6A00
2VZ8A 3KG6A 4LN9A 3EL6A 5BP2A 3HRRA 5E1VA 5KKUA 4U3VA 5BP3A 3KG9A 3KG7A 2VZ9A 4KC5A 4OOCA 3HRQA
chains in the Genus database with same CATH superfamily
3P2QA 3B18A 2GLVA 3EL6A 4H4GA 4IENA 5EGLA 2O6BA 2ESSA 1WM6A 3SPSA 4W78A 4A0XA 4B0CA 5DIOA 5SZVA 4R9ZA 1MKBA 3R3BA 4K4DA 2BI0A 2HBOA 1LO7A 2PIMA 3KV7A 4B0BA 3P3IA 4CL6A 1C8UA 3E29A 3R32A 3AZBA 2FUJA 3HM0A 3KX7A 3WEWA 4W78B 5HD6A 1Q4TA 2VKZG 4U3VA 2OV9A 3LWGA 5EO2A 5BUXA 5F6RA 1BVQA 1J1YA 1VI8A 2EGJA 2OWNA 2F41A 3KVUA 4HZPA 4RLUA 4WNBA 3DKZA 4K4AA 5HMBA 5SZYA 2CWZA 2GVHA 2O6TA 3R3CA 4B0IA 5KKUA 5T07A 5SZUA 3DP3A 2PRXA 3OMLA 3F5OA 4MOBA 4OOCA 2EGIA 2VZ8A 4WNBB 3E1EA 4GAHA 3S6PA 2Q2BA 5E1VA 1IQ6A 3LW3A 3P2SA 1WN3A 1Y7UA 1SBKA 1ZHGA 3DOZA 2Q78A 3R3DA 4ZW0A 3B7JA 3IR3A 2GF6A 1Q6WA 1T82A 2XEMA 3AZ9A 1NJKA 3KVZA 4QDBA 3BBJA 1PN2A 2FS2A 2O5UA 4B0JA 2EGRA 3RQBA 4ZV3A 2B3MA 3HDUA 1MKAA 3KUWA 3P2RA 2OKIA 4NCPA 4A0YA 5T06A 3KG7A 1Q4UA 3LMBA 5BUWA 3CK1A 1TBUA 3ED0A 1IXLA 3HRQA 3S4KA 3D6LA 5BP2A 4MZQA 4K4CA 5EGKA 3KVIA 4HZOA 3R87A 3DP1A 3R37A 3U0AA 4FQ9A 2OKHA 3KV8A 2QQPA 1Q4SA 3LBEA 4RLTB 3BNVA 4KEHA 5SZZA 2QQ2A 3KX8A 4QFWA 1U1ZA 1OHFA 5EGJA 3ZH7A 2CY9A 4R4UA 3HMJG 1Z6BA 3ZH6A 1SH8A 1LO9A 4M20A 3R35A 4RV2A 1YLIA 4ZRFA 3DP0A 2C2IA 3LBBA 4AE8A 2OIWA 3R36A 4RLJA 3KG9A 3BJKA 3RD7A 3ZH7B 3CF9A 3D04A 1S9CA 1YOCA 5KL9A 4GAKA 4RV2B 4K00A 4ORDA 3KHPA 2PFCA 1S5UA 1Z54A 2XFLA 3GEKA 2V1OA 3KUVA 4RLJB 4RLWA 5HMCA 2EISA 3NWZA 3EXZA 5EP5A 4ZJBA 4RLTA 1PN4A 3QOOA 4OOBA 3ZH5A 5BP3A 4I45A 4HZNA 5BYUA 5DM5A 3TEAA 2GLLA 3DP2A 4QD9A 4QDAA 4RLWB 3R3FA 4RMMA 4MOCA 5EO4A 3R3AA 2AV9A 2UV8G 4XY6A 2HX5A 2PZHA 4AE7A 3K67A 2OAFA 3KH8A 3P3FA 4MTUA 2GLPA 2F3XA 3KG8A 3CJYA 4YBVA 4I82A 4A12A 4A0ZA 1LO8A 1VH5A 3D6XA 4E3EA 3DOYA 4I83A 2W3XA 1WLVA 2HLJA 4XY5A 4KC5A 3B7KA 4B8UA 4I4JA 3CF8A 1WLUA 3AZ8A 3HRRA 1VH9A 3F1TA 4QD7A 5T02A 4K4BA 2VZ9A 3KG6A 3FRNA 3QY3A 1PSUA 2F0XA 3R34A 2O6UA 4FFUA 2H4UA 3E8PA 3Q62A 2QWZA 5HZ4A 4K02A 2NUJA 5HWFA 1SC0A 4K49A 1VPMA 4RLUB 2DSLA 5CPGA 3AZAA 3LZ7A 2B6EA 2CYEA 3ESIA 4QD8A 5BUYA 2GLMA 4ZRBA 1ZKIA 4LN9A 3KW1A
chains in the Genus database with same CATH topology
3ZH6A 3B18A 3EL6A 3HMJG 3BBJA 4R9ZA 3KG9A 4KC5A 3RD7A 3RQBA 3ZH7B 3HRRA 4U3VA 2VKZG 3KG7A 2PFCA 2VZ9A 3HRQA 3KG6A 3FRNA 5BP2A 5KKUA 3ZH5A 5BP3A 4OOCA 3U0AA 2VZ8A 3S6PA 2QQPA 2UV8G 5E1VA 4QFWA 1OHFA 4LN9A 3ZH7A 4R4UA 3KG8A 3CJYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZ8 A;  3KG6 A;  4LN9 A;  3EL6 A;  5BP2 A;  3HRR A;  5E1V A;  5KKU A;  4U3V A;  5BP3 A;  3KG9 A;  3KG7 A;  2VZ9 A;  4KC5 A;  4OOC A;  3HRQ A; 
#chains in the Genus database with same CATH topology
 3P2Q A;  3B18 A;  2GLV A;  3EL6 A;  4H4G A;  4IEN A;  5EGL A;  2O6B A;  2ESS A;  1WM6 A;  3SPS A;  4W78 A;  4A0X A;  4B0C A;  5DIO A;  5SZV A;  4R9Z A;  1MKB A;  3R3B A;  4K4D A;  2BI0 A;  2HBO A;  1LO7 A;  2PIM A;  3KV7 A;  4B0B A;  3P3I A;  4CL6 A;  1C8U A;  3E29 A;  3R32 A;  3AZB A;  2FUJ A;  3HM0 A;  3KX7 A;  3WEW A;  4W78 B;  5HD6 A;  1Q4T A;  2VKZ G;  4U3V A;  2OV9 A;  3LWG A;  5EO2 A;  5BUX A;  5F6R A;  1BVQ A;  1J1Y A;  1VI8 A;  2EGJ A;  2OWN A;  2F41 A;  3KVU A;  4HZP A;  4RLU A;  4WNB A;  3DKZ A;  4K4A A;  5HMB A;  5SZY A;  2CWZ A;  2GVH A;  2O6T A;  3R3C A;  4B0I A;  5KKU A;  5T07 A;  5SZU A;  3DP3 A;  2PRX A;  3OML A;  3F5O A;  4MOB A;  4OOC A;  2EGI A;  2VZ8 A;  4WNB B;  3E1E A;  4GAH A;  3S6P A;  2Q2B A;  5E1V A;  1IQ6 A;  3LW3 A;  3P2S A;  1WN3 A;  1Y7U A;  1SBK A;  1ZHG A;  3DOZ A;  2Q78 A;  3R3D A;  4ZW0 A;  3B7J A;  3IR3 A;  2GF6 A;  1Q6W A;  1T82 A;  2XEM A;  3AZ9 A;  1NJK A;  3KVZ A;  4QDB A;  3BBJ A;  1PN2 A;  2FS2 A;  2O5U A;  4B0J A;  2EGR A;  3RQB A;  4ZV3 A;  2B3M A;  3HDU A;  1MKA A;  3KUW A;  3P2R A;  2OKI A;  4NCP A;  4A0Y A;  5T06 A;  3KG7 A;  1Q4U A;  3LMB A;  5BUW A;  3CK1 A;  1TBU A;  3ED0 A;  1IXL A;  3HRQ A;  3S4K A;  3D6L A;  5BP2 A;  4MZQ A;  4K4C A;  5EGK A;  3KVI A;  4HZO A;  3R87 A;  3DP1 A;  3R37 A;  3U0A A;  4FQ9 A;  2OKH A;  3KV8 A;  2QQP A;  1Q4S A;  3LBE A;  4RLT B;  3BNV A;  4KEH A;  5SZZ A;  2QQ2 A;  3KX8 A;  4QFW A;  1U1Z A;  1OHF A;  5EGJ A;  3ZH7 A;  2CY9 A;  4R4U A;  3HMJ G;  1Z6B A;  3ZH6 A;  1SH8 A;  1LO9 A;  4M20 A;  3R35 A;  4RV2 A;  1YLI A;  4ZRF A;  3DP0 A;  2C2I A;  3LBB A;  4AE8 A;  2OIW A;  3R36 A;  4RLJ A;  3KG9 A;  3BJK A;  3RD7 A;  3ZH7 B;  3CF9 A;  3D04 A;  1S9C A;  1YOC A;  5KL9 A;  4GAK A;  4RV2 B;  4K00 A;  4ORD A;  3KHP A;  2PFC A;  1S5U A;  1Z54 A;  2XFL A;  3GEK A;  2V1O A;  3KUV A;  4RLJ B;  4RLW A;  5HMC A;  2EIS A;  3NWZ A;  3EXZ A;  5EP5 A;  4ZJB A;  4RLT A;  1PN4 A;  3QOO A;  4OOB A;  3ZH5 A;  5BP3 A;  4I45 A;  4HZN A;  5BYU A;  5DM5 A;  3TEA A;  2GLL A;  3DP2 A;  4QD9 A;  4QDA A;  4RLW B;  3R3F A;  4RMM A;  4MOC A;  5EO4 A;  3R3A A;  2AV9 A;  2UV8 G;  4XY6 A;  2HX5 A;  2PZH A;  4AE7 A;  3K67 A;  2OAF A;  3KH8 A;  3P3F A;  4MTU A;  2GLP A;  2F3X A;  3KG8 A;  3CJY A;  4YBV A;  4I82 A;  4A12 A;  4A0Z A;  1LO8 A;  1VH5 A;  3D6X A;  4E3E A;  3DOY A;  4I83 A;  2W3X A;  1WLV A;  2HLJ A;  4XY5 A;  4KC5 A;  3B7K A;  4B8U A;  4I4J A;  3CF8 A;  1WLU A;  3AZ8 A;  3HRR A;  1VH9 A;  3F1T A;  4QD7 A;  5T02 A;  4K4B A;  2VZ9 A;  3KG6 A;  3FRN A;  3QY3 A;  1PSU A;  2F0X A;  3R34 A;  2O6U A;  4FFU A;  2H4U A;  3E8P A;  3Q62 A;  2QWZ A;  5HZ4 A;  4K02 A;  2NUJ A;  5HWF A;  1SC0 A;  4K49 A;  1VPM A;  4RLU B;  2DSL A;  5CPG A;  3AZA A;  3LZ7 A;  2B6E A;  2CYE A;  3ESI A;  4QD8 A;  5BUY A;  2GLM A;  4ZRB A;  1ZKI A;  4LN9 A;  3KW1 A; 
#chains in the Genus database with same CATH homology
 3ZH6 A;  3B18 A;  3EL6 A;  3HMJ G;  3BBJ A;  4R9Z A;  3KG9 A;  4KC5 A;  3RD7 A;  3RQB A;  3ZH7 B;  3HRR A;  4U3V A;  2VKZ G;  3KG7 A;  2PFC A;  2VZ9 A;  3HRQ A;  3KG6 A;  3FRN A;  5BP2 A;  5KKU A;  3ZH5 A;  5BP3 A;  4OOC A;  3U0A A;  2VZ8 A;  3S6P A;  2QQP A;  2UV8 G;  5E1V A;  4QFW A;  1OHF A;  4LN9 A;  3ZH7 A;  4R4U A;  3KG8 A;  3CJY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...