3EMOA

Crystal structure of transmembrane hia 973-1098
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
126
structure length
126
Chain Sequence
VVIDNVANGDISATSTDAINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein/cell adhesion
molecule keywords Hia (Adhesin)
publication title Repetitive Architecture of the Haemophilus influenzae Hia Trimeric Autotransporter
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 33
structure length 126
sequence length 126
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03895 YadA_anchor YadA-like membrane anchor domain
A PF05662 YadA_stalk Coiled stalk of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3emoA00
2LMEA 3CI0K 2GR8A 3CI0I 2RETA 3EMOA 5BW0B 3CFIA 2GR7A
chains in the Genus database with same CATH superfamily
2G5ZA 3HL6A 4BHRA 3IODA 1N2OA 1N2BA 3ISJA 3IUBA 3IVXA 1N2HA 2IECA 2OGFA 4FZJA 1IHOA 4G5YA 4DDHA 1N2IA 4MUNA 3IVGA 3Q10A 3CFFL 3CFAL 4MUGA 2A53A 3IMCA 4EFKA 4G5FA 3CFIA 3UY4A 3IMGA 2X3FA 3COWA 2A50A 5HG0A 3CI0K 5KWVA 4MUIA 4DDKA 2A84A 4MUJA 1N2EA 2GR8A 3UK2A 2GW4A 2GR7A 2A88A 1V8FA 2I52A 4EF6A 1MOPA 2A56A 1UFVA 3INNA 3IMEA 3MXTA 3COVA 3IOBA 2A52A 3LE8A 4MUEA 4MUHA 4MQ6A 3COYA 2G2SA 2EJCA 2RETA 2A54A 4MULA 5G2FA 3MUEA 2G3DA 3IUEA 5BW0B 3AG6A 4DDMA 1N2GA 3N8HA 2G16A 3IOCA 4MUKA 4MUFA 2LMEA 4DE5A 3IOEA 3CFHL 3QTTA 3Q12A 3CI0I 4IXJA 2A7XA 3EMOA 5EXCA 3AG5A 3COZA 3IVCA 3LF4A 3UA0A 2A86A 1N2JA
chains in the Genus database with same CATH topology
2LMEA 3CI0K 2GR8A 3CI0I 2RETA 3EMOA 5BW0B 3CFIA 2GR7A 3CI0J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LME A;  3CI0 K;  2GR8 A;  3CI0 I;  2RET A;  3EMO A;  5BW0 B;  3CFI A;  2GR7 A; 
#chains in the Genus database with same CATH topology
 2G5Z A;  3HL6 A;  4BHR A;  3IOD A;  1N2O A;  1N2B A;  3ISJ A;  3IUB A;  3IVX A;  1N2H A;  2IEC A;  2OGF A;  4FZJ A;  1IHO A;  4G5Y A;  4DDH A;  1N2I A;  4MUN A;  3IVG A;  3Q10 A;  3CFF L;  3CFA L;  4MUG A;  2A53 A;  3IMC A;  4EFK A;  4G5F A;  3CFI A;  3UY4 A;  3IMG A;  2X3F A;  3COW A;  2A50 A;  5HG0 A;  3CI0 K;  5KWV A;  4MUI A;  4DDK A;  2A84 A;  4MUJ A;  1N2E A;  2GR8 A;  3UK2 A;  2GW4 A;  2GR7 A;  2A88 A;  1V8F A;  2I52 A;  4EF6 A;  1MOP A;  2A56 A;  1UFV A;  3INN A;  3IME A;  3MXT A;  3COV A;  3IOB A;  2A52 A;  3LE8 A;  4MUE A;  4MUH A;  4MQ6 A;  3COY A;  2G2S A;  2EJC A;  2RET A;  2A54 A;  4MUL A;  5G2F A;  3MUE A;  2G3D A;  3IUE A;  5BW0 B;  3AG6 A;  4DDM A;  1N2G A;  3N8H A;  2G16 A;  3IOC A;  4MUK A;  4MUF A;  2LME A;  4DE5 A;  3IOE A;  3CFH L;  3QTT A;  3Q12 A;  3CI0 I;  4IXJ A;  2A7X A;  3EMO A;  5EXC A;  3AG5 A;  3COZ A;  3IVC A;  3LF4 A;  3UA0 A;  2A86 A;  1N2J A; 
#chains in the Genus database with same CATH homology
 2LME A;  3CI0 K;  2GR8 A;  3CI0 I;  2RET A;  3EMO A;  5BW0 B;  3CFI A;  2GR7 A;  3CI0 J; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...