3ENCA

Crystal structure of pyrococcus furiosus pcc1 dimer
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
79
structure length
79
Chain Sequence
KAKRVQAKIEMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTVNSYLRWIKAAIDVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords protein PCC1
publication title Atomic structure of the KEOPS complex: an ancient protein kinase-containing molecular machine.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Unknown function
total genus 15
structure length 79
sequence length 79
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3encA00
3I3WA 1KFIA 1P5DX 1LXTA 2DKDA 1K2YX 3BKQX 4BJUA 2JPIA 2DKAA 5JN5A 2Z0FA 3NA5A 3PMGA 1C47A 2H4LX 1P5GX 4WXAA 1PCJX 2FKFA 1K35A 1WJWA 3ENCA 4WX8A 3OLPA 4QG5A 3C04A 2FKMX 3ENOC 5EPCA 2FUVA 1VKLA 3PDKA 5BMNA 3RSMA 1JDYA 2H5AX 1KFQA 3UW2A 5HSHA 4HJHA 2DKCA 1WQAA 5F9CA 5JMVD 1TUOA 5BMPA 4IL8A 5KL0A 2F7LA 1C4GA 1PCMX 4MRQA
chains in the Genus database with same CATH superfamily
1YQRA 3EAYA 1C9BB 4PY5A 2Z8UA 3I0XA 4D7RA 1KFIA 1TBPA 4TPSA 4EALA 2NOBA 3BKQX 1EUVA 2DKAA 1FN7A 3I0WA 1C47A 2H4LX 1P5GX 1W80A 1PCJX 3OSTA 1K35A 1QNEA 1YQLA 2O3OA 3OH9A 1QTSA 5EPCA 1LWYA 3OCIA 1VKLA 2I5WA 1QN5A 1B9KA 3PDKA 4WZSD 2NVMA 1RM1A 2HL9A 4EAGA 5HSHA 1HU0A 2VJ0A 4EJYA 1KYDA 4RODB 5F9CA 3RPJA 3OH6A 2Y8QA 1QNCA 1N39A 1YTFA 2NOIA 1KYUA 1C4GA 1TBAB 1MP9A 1UT7A 2DKDA 1M3HA 2LAEA 1LWVA 4BJUA 1QN3A 2D0AA 2QRCA 1J3MA 2Z0FA 2V9JA 1KY7A 4WXAA 1VTLE 1WJWA 4WX8A 2YH5A 5IYDP 5AN4A 2FGTA 3OC3C 3OLPA 4QG5A 1QTPA 3OSEA 1QN6A 3F0ZA 2QRDA 1T6AA 1CDWA 2D0CA 2IV9A 1LWWA 1YQKA 2R5XA 1N3CA 4HJHA 2DKCA 3N89A 3OSMA 1QNBA 1PVSA 5BMPA 3F10A 2JOIA 1JFIC 1XSZA 3H1ZA 3DPUA 1YTBA 2HZSA 1Q9UA 2V8QA 4I8OA 1PCMX 1KO9A 4MRQA 3TDHA 4CFFA 4EAJA 3CWUA 3D7QA 1KY6A 2NWVA 1NGMA 2IV8A 3TE5A 3CWSA 2HL8A 2YA3A 4EAKA 2NOLA 3ASMA 4Q11A 4ROEB 3D4VA 2MJ7A 3NA5A 3PMGA 2G30A 3CVSA 1E42A 1YQMA 1M5Q1 4EAIA 1QN4A 3HS8A 2NOFA 1EBMA 2HZMA 3CWAA 1VTOA 1D3UA 3C04A 4DULA 2FKMX 3KTUA 3CVTA 2Y8LA 3OGDA 2ZFDB 2QLVA 3RSMA 1JDYA 2QREA 1MPGA 4EJZA 3UW2A 1VOLB 1WQAA 1QN8A 1PCZA 3DPTA 1UT4A 1NH2A 4IL8A 3T4NA 2F7LA 3VN5A 3KRMA 3SNSA 4D7QA 5IYCP 2JHNA 1TGHA 3I3WA 2NOZA 1UL7A 1P5DX 2OOYA 1LXTA 2PWWA 1K2YX 2NOHA 2JPIA 5JN5A 1NVPA 1R4XA 2OOXA 2EHBD 2D0BA 2JHJA 2FKFA 4C7PA 1PZDA 2MZ8A 1M3QA 2HKPA 3ENCA 1VOKA 1N3AA 2XHIA 3ULXA 2QR1A 3ENOC 1DIZA 1V5SA 2FUVA 3HS9A 4B0AA 5IYBP 5BMNA 1QN7A 2V92A 2H5AX 1KFQA 3CW7A 2NLVA 4ROCB 3CWTA 3EIKA 1TUOA 5JMVD 1QNAA 1AISA 5KL0A 3IH7A 1QN9A 2NOEA 1KYFA
chains in the Genus database with same CATH topology
3I3WA 1KFIA 1P5DX 1LXTA 2DKDA 1K2YX 3BKQX 4BJUA 2JPIA 2DKAA 5JN5A 2Z0FA 3NA5A 3PMGA 1C47A 2H4LX 1P5GX 4WXAA 1PCJX 2FKFA 1K35A 1WJWA 3ENCA 4WX8A 3OLPA 4QG5A 3C04A 2FKMX 3ENOC 5EPCA 2FUVA 1VKLA 3PDKA 5BMNA 3RSMA 1JDYA 2H5AX 1KFQA 3UW2A 5HSHA 4HJHA 2DKCA 1WQAA 5F9CA 5JMVD 1TUOA 5BMPA 4IL8A 5KL0A 2F7LA 1C4GA 1PCMX 4MRQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I3W A;  1KFI A;  1P5D X;  1LXT A;  2DKD A;  1K2Y X;  3BKQ X;  4BJU A;  2JPI A;  2DKA A;  5JN5 A;  2Z0F A;  3NA5 A;  3PMG A;  1C47 A;  2H4L X;  1P5G X;  4WXA A;  1PCJ X;  2FKF A;  1K35 A;  1WJW A;  3ENC A;  4WX8 A;  3OLP A;  4QG5 A;  3C04 A;  2FKM X;  3ENO C;  5EPC A;  2FUV A;  1VKL A;  3PDK A;  5BMN A;  3RSM A;  1JDY A;  2H5A X;  1KFQ A;  3UW2 A;  5HSH A;  4HJH A;  2DKC A;  1WQA A;  5F9C A;  5JMV D;  1TUO A;  5BMP A;  4IL8 A;  5KL0 A;  2F7L A;  1C4G A;  1PCM X;  4MRQ A; 
#chains in the Genus database with same CATH topology
 1YQR A;  3EAY A;  1C9B B;  4PY5 A;  2Z8U A;  3I0X A;  4D7R A;  1KFI A;  1TBP A;  4TPS A;  4EAL A;  2NOB A;  3BKQ X;  1EUV A;  2DKA A;  1FN7 A;  3I0W A;  1C47 A;  2H4L X;  1P5G X;  1W80 A;  1PCJ X;  3OST A;  1K35 A;  1QNE A;  1YQL A;  2O3O A;  3OH9 A;  1QTS A;  5EPC A;  1LWY A;  3OCI A;  1VKL A;  2I5W A;  1QN5 A;  1B9K A;  3PDK A;  4WZS D;  2NVM A;  1RM1 A;  2HL9 A;  4EAG A;  5HSH A;  1HU0 A;  2VJ0 A;  4EJY A;  1KYD A;  4ROD B;  5F9C A;  3RPJ A;  3OH6 A;  2Y8Q A;  1QNC A;  1N39 A;  1YTF A;  2NOI A;  1KYU A;  1C4G A;  1TBA B;  1MP9 A;  1UT7 A;  2DKD A;  1M3H A;  2LAE A;  1LWV A;  4BJU A;  1QN3 A;  2D0A A;  2QRC A;  1J3M A;  2Z0F A;  2V9J A;  1KY7 A;  4WXA A;  1VTL E;  1WJW A;  4WX8 A;  2YH5 A;  5IYD P;  5AN4 A;  2FGT A;  3OC3 C;  3OLP A;  4QG5 A;  1QTP A;  3OSE A;  1QN6 A;  3F0Z A;  2QRD A;  1T6A A;  1CDW A;  2D0C A;  2IV9 A;  1LWW A;  1YQK A;  2R5X A;  1N3C A;  4HJH A;  2DKC A;  3N89 A;  3OSM A;  1QNB A;  1PVS A;  5BMP A;  3F10 A;  2JOI A;  1JFI C;  1XSZ A;  3H1Z A;  3DPU A;  1YTB A;  2HZS A;  1Q9U A;  2V8Q A;  4I8O A;  1PCM X;  1KO9 A;  4MRQ A;  3TDH A;  4CFF A;  4EAJ A;  3CWU A;  3D7Q A;  1KY6 A;  2NWV A;  1NGM A;  2IV8 A;  3TE5 A;  3CWS A;  2HL8 A;  2YA3 A;  4EAK A;  2NOL A;  3ASM A;  4Q11 A;  4ROE B;  3D4V A;  2MJ7 A;  3NA5 A;  3PMG A;  2G30 A;  3CVS A;  1E42 A;  1YQM A;  1M5Q 1;  4EAI A;  1QN4 A;  3HS8 A;  2NOF A;  1EBM A;  2HZM A;  3CWA A;  1VTO A;  1D3U A;  3C04 A;  4DUL A;  2FKM X;  3KTU A;  3CVT A;  2Y8L A;  3OGD A;  2ZFD B;  2QLV A;  3RSM A;  1JDY A;  2QRE A;  1MPG A;  4EJZ A;  3UW2 A;  1VOL B;  1WQA A;  1QN8 A;  1PCZ A;  3DPT A;  1UT4 A;  1NH2 A;  4IL8 A;  3T4N A;  2F7L A;  3VN5 A;  3KRM A;  3SNS A;  4D7Q A;  5IYC P;  2JHN A;  1TGH A;  3I3W A;  2NOZ A;  1UL7 A;  1P5D X;  2OOY A;  1LXT A;  2PWW A;  1K2Y X;  2NOH A;  2JPI A;  5JN5 A;  1NVP A;  1R4X A;  2OOX A;  2EHB D;  2D0B A;  2JHJ A;  2FKF A;  4C7P A;  1PZD A;  2MZ8 A;  1M3Q A;  2HKP A;  3ENC A;  1VOK A;  1N3A A;  2XHI A;  3ULX A;  2QR1 A;  3ENO C;  1DIZ A;  1V5S A;  2FUV A;  3HS9 A;  4B0A A;  5IYB P;  5BMN A;  1QN7 A;  2V92 A;  2H5A X;  1KFQ A;  3CW7 A;  2NLV A;  4ROC B;  3CWT A;  3EIK A;  1TUO A;  5JMV D;  1QNA A;  1AIS A;  5KL0 A;  3IH7 A;  1QN9 A;  2NOE A;  1KYF A; 
#chains in the Genus database with same CATH homology
 3I3W A;  1KFI A;  1P5D X;  1LXT A;  2DKD A;  1K2Y X;  3BKQ X;  4BJU A;  2JPI A;  2DKA A;  5JN5 A;  2Z0F A;  3NA5 A;  3PMG A;  1C47 A;  2H4L X;  1P5G X;  4WXA A;  1PCJ X;  2FKF A;  1K35 A;  1WJW A;  3ENC A;  4WX8 A;  3OLP A;  4QG5 A;  3C04 A;  2FKM X;  3ENO C;  5EPC A;  2FUV A;  1VKL A;  3PDK A;  5BMN A;  3RSM A;  1JDY A;  2H5A X;  1KFQ A;  3UW2 A;  5HSH A;  4HJH A;  2DKC A;  1WQA A;  5F9C A;  5JMV D;  1TUO A;  5BMP A;  4IL8 A;  5KL0 A;  2F7L A;  1C4G A;  1PCM X;  4MRQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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