3EO1C

Structure of the fab fragment of gc-1008 in complex with transforming growth factor-beta 3
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
112
structure length
112
Chain Sequence
ALDTNYCFRNLEENCCVRPLYIDFRQDLGWKWVHEPKGYYANFCSGPCPYLRSADTTHSTVLGLYNTLNPEASASPCCVPQDLEPLTILYYVGRTPKVEQLSNMVVKSCKCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system/cytokine
molecule keywords GC-1008 Fab Light Chain
publication title A cytokine-neutralizing antibody as a structural mimetic of 2 receptor interactions
pubmed doi rcsb
source organism Mus musculus
total genus 20
structure length 112
sequence length 112
chains with identical sequence F, I, L
ec nomenclature
pdb deposition date 2008-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3eo1C00
2ARPA 1LXIA 4N1DA 3S1BV 1KLCA 1ES7A 3QB4A 2P6AA 1FL7B 2GYZA 4UHYA 5BQEA 1AGQA 2H64A 2XV7A 5HHDA 1VPPV 3KFDA 1WQ9A 2KD3A 3SEKB 1KATW 5FV2V 1HRPA 1XWDB 3HH2A 5BPUA 4QHUC 5HI3A 2GOOA 1FL7A 5JZ7A 1TFGA 5HHVA 1WAQA 1FLTV 1SG1A 1TGKA 5HI5A 1KLAA 5F3HI 1XWDA 2C7WA 1VPFA 3EVSB 3BDYV 1MKKA 1MKGA 4HQXA 4YCGC 3B4VA 1AOCA 1BNDB 1NYSB 4WPBA 5AEJA 4HQUA 2QJAA 2XACA 1WWWV 1B8KA 5E4GA 1RV6V 1BJ1V 4MQWB 4XPJA 4MPLA 3BUKA 3RJRA 1S4YB 1BNDA 2QJBA 1NYUB 1HCNB 1TZIV 1M4UL 1BTGA 2R53A 2H62A 2ARVA 1SGFB 1WQ8A 2TGIA 3BMPA 3EO1C 5FV1V 4GLSE 4MQWA 2B0UA 1PDGA 1BMPA 3FUBB 5F3BC 5BQ8D 1LX5A 2IFGE 1HCNA 4HR9A 4X1JA 2FJGV 3S1KV 2VXSA 2ASKA 5BQ8A 1HCFA 5HHXA 4FAOA 4UHZA 4UI2B 2QJ9A 4EDWV 4QAFC 3IJ2A 1FZVA 4GLNE 4BV4L 4YCIC 1E9JA 2QR0C 4KV5A 4HSAA 5BQCA 4UI0A 3V6BA 3QTKA 3BK3A 2X1XE 4LXRJ 4AY9B 1REWA 1QFWB 3MJGA 3V2AA 4KZNA 5BQEB 5HK5A 2QCWA 2V5EB 2X1WA 1TGJA 1CZ8V 4ZFFC 1HRPB 2VWEA 1DZ7A 2VPFA 5HI4A 1ZKZA 4AY9A 1B8MB 1QFWA 3E07A 1KTZA 4QCIC 3MJKA 4EC7A 2GNNA 1TZHV 5BQBA 2PJYA 4EFVA 3P9WA 1B98A 1REUA 2FJHV 1M4UA 1QTYR 4LXSJ 5HK5E 2R52A 5BQ8B 4MIDA 4ZBNA 1BETA 1JPYA 5HHCA 1B8MA 1HD4A 3JVFA 4EDXV 2QCQA 2BHKA 4UI1A 4EAXA 2GYRA 1NT3A 2GH0C 1MJVA 4KXZA 1WQ9B
chains in the Genus database with same CATH superfamily
2ARPA 1LXIA 4N1DA 3S1BV 1KLCA 1ES7A 3QB4A 2P6AA 1FL7B 2GYZA 4UHYA 5BQEA 1AGQA 2H64A 2XV7A 5HHDA 1VPPV 3KFDA 1WQ9A 2KD3A 3SEKB 1KATW 5FV2V 1HRPA 1XWDB 3HH2A 5BPUA 4QHUC 5HI3A 2GOOA 1FL7A 5JZ7A 1TFGA 5HHVA 1WAQA 1FLTV 1SG1A 1TGKA 5HI5A 1KLAA 5F3HI 1XWDA 2C7WA 1VPFA 3EVSB 3BDYV 1MKKA 1MKGA 4HQXA 4YCGC 3B4VA 1AOCA 1BNDB 1NYSB 4WPBA 5AEJA 4HQUA 2QJAA 2XACA 1WWWV 1B8KA 5E4GA 1RV6V 1BJ1V 4MQWB 4XPJA 4MPLA 3BUKA 3RJRA 1S4YB 1BNDA 2QJBA 1NYUB 1HCNB 1TZIV 1M4UL 1BTGA 2R53A 2H62A 2ARVA 1SGFB 1WQ8A 2TGIA 3BMPA 3EO1C 5FV1V 4GLSE 4MQWA 2B0UA 1PDGA 1BMPA 3FUBB 5F3BC 5BQ8D 1LX5A 2IFGE 1HCNA 4HR9A 4X1JA 2FJGV 3S1KV 2VXSA 2ASKA 5BQ8A 1HCFA 5HHXA 4FAOA 4UHZA 4UI2B 2QJ9A 4EDWV 4QAFC 3IJ2A 1FZVA 4GLNE 4BV4L 4YCIC 1E9JA 2QR0C 4KV5A 4HSAA 5BQCA 4UI0A 3V6BA 3QTKA 3BK3A 2X1XE 4LXRJ 4AY9B 1REWA 1QFWB 3MJGA 3V2AA 4KZNA 5BQEB 5HK5A 2QCWA 2V5EB 2X1WA 1TGJA 1CZ8V 4ZFFC 1HRPB 2VWEA 1DZ7A 2VPFA 5HI4A 1ZKZA 4AY9A 1B8MB 1QFWA 3E07A 1KTZA 4QCIC 3MJKA 4EC7A 2GNNA 1TZHV 5BQBA 2PJYA 4EFVA 3P9WA 1B98A 1REUA 2FJHV 1M4UA 1QTYR 4LXSJ 5HK5E 2R52A 5BQ8B 4MIDA 4ZBNA 1BETA 1JPYA 5HHCA 1B8MA 1HD4A 3JVFA 4EDXV 2QCQA 2BHKA 4UI1A 4EAXA 2GYRA 1NT3A 2GH0C 1MJVA 4KXZA 1WQ9B
chains in the Genus database with same CATH topology
2ARPA 1LXIA 4N1DA 3S1BV 1KLCA 1ES7A 3QB4A 2P6AA 1FL7B 2GYZA 4UHYA 5BQEA 1AGQA 2H64A 2XV7A 5HHDA 1VPPV 3KFDA 1WQ9A 2KD3A 3SEKB 1KATW 5FV2V 1HRPA 1XWDB 3HH2A 5BPUA 4QHUC 5HI3A 2GOOA 1FL7A 5JZ7A 1TFGA 5HHVA 1WAQA 1FLTV 1SG1A 1TGKA 5HI5A 1KLAA 5F3HI 1XWDA 2C7WA 1VPFA 3EVSB 3BDYV 1MKKA 1MKGA 4HQXA 4YCGC 3B4VA 1AOCA 1BNDB 1NYSB 4WPBA 5AEJA 4HQUA 2QJAA 2XACA 1WWWV 1B8KA 5E4GA 1RV6V 1BJ1V 4MQWB 4XPJA 4MPLA 3BUKA 3RJRA 1S4YB 1BNDA 2QJBA 1NYUB 1HCNB 1TZIV 1M4UL 1BTGA 2R53A 2H62A 2ARVA 1SGFB 1WQ8A 2TGIA 3BMPA 3EO1C 5FV1V 4GLSE 4MQWA 2B0UA 1PDGA 1BMPA 3FUBB 5F3BC 5BQ8D 1LX5A 2IFGE 1HCNA 4HR9A 4X1JA 2FJGV 3S1KV 2VXSA 2ASKA 5BQ8A 1HCFA 5HHXA 4FAOA 4UHZA 4UI2B 2QJ9A 4EDWV 4QAFC 3IJ2A 1FZVA 4GLNE 4BV4L 4YCIC 1E9JA 2QR0C 4KV5A 4HSAA 5BQCA 4UI0A 3V6BA 3QTKA 3BK3A 2X1XE 4LXRJ 4AY9B 1REWA 1QFWB 3MJGA 3V2AA 4KZNA 5BQEB 5HK5A 2QCWA 2V5EB 2X1WA 1TGJA 1CZ8V 4ZFFC 1HRPB 2VWEA 1DZ7A 2VPFA 5HI4A 1ZKZA 4AY9A 1B8MB 1QFWA 3E07A 1KTZA 4QCIC 3MJKA 4EC7A 2GNNA 1TZHV 5BQBA 2PJYA 4EFVA 3P9WA 1B98A 1REUA 2FJHV 1M4UA 1QTYR 4LXSJ 5HK5E 2R52A 5BQ8B 4MIDA 4ZBNA 1BETA 1JPYA 5HHCA 1B8MA 1HD4A 3JVFA 4EDXV 2QCQA 2BHKA 4UI1A 4EAXA 2GYRA 1NT3A 2GH0C 1MJVA 4KXZA 1WQ9B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ARP A;  1LXI A;  4N1D A;  3S1B V;  1KLC A;  1ES7 A;  3QB4 A;  2P6A A;  1FL7 B;  2GYZ A;  4UHY A;  5BQE A;  1AGQ A;  2H64 A;  2XV7 A;  5HHD A;  1VPP V;  3KFD A;  1WQ9 A;  2KD3 A;  3SEK B;  1KAT W;  5FV2 V;  1HRP A;  1XWD B;  3HH2 A;  5BPU A;  4QHU C;  5HI3 A;  2GOO A;  1FL7 A;  5JZ7 A;  1TFG A;  5HHV A;  1WAQ A;  1FLT V;  1SG1 A;  1TGK A;  5HI5 A;  1KLA A;  5F3H I;  1XWD A;  2C7W A;  1VPF A;  3EVS B;  3BDY V;  1MKK A;  1MKG A;  4HQX A;  4YCG C;  3B4V A;  1AOC A;  1BND B;  1NYS B;  4WPB A;  5AEJ A;  4HQU A;  2QJA A;  2XAC A;  1WWW V;  1B8K A;  5E4G A;  1RV6 V;  1BJ1 V;  4MQW B;  4XPJ A;  4MPL A;  3BUK A;  3RJR A;  1S4Y B;  1BND A;  2QJB A;  1NYU B;  1HCN B;  1TZI V;  1M4U L;  1BTG A;  2R53 A;  2H62 A;  2ARV A;  1SGF B;  1WQ8 A;  2TGI A;  3BMP A;  3EO1 C;  5FV1 V;  4GLS E;  4MQW A;  2B0U A;  1PDG A;  1BMP A;  3FUB B;  5F3B C;  5BQ8 D;  1LX5 A;  2IFG E;  1HCN A;  4HR9 A;  4X1J A;  2FJG V;  3S1K V;  2VXS A;  2ASK A;  5BQ8 A;  1HCF A;  5HHX A;  4FAO A;  4UHZ A;  4UI2 B;  2QJ9 A;  4EDW V;  4QAF C;  3IJ2 A;  1FZV A;  4GLN E;  4BV4 L;  4YCI C;  1E9J A;  2QR0 C;  4KV5 A;  4HSA A;  5BQC A;  4UI0 A;  3V6B A;  3QTK A;  3BK3 A;  2X1X E;  4LXR J;  4AY9 B;  1REW A;  1QFW B;  3MJG A;  3V2A A;  4KZN A;  5BQE B;  5HK5 A;  2QCW A;  2V5E B;  2X1W A;  1TGJ A;  1CZ8 V;  4ZFF C;  1HRP B;  2VWE A;  1DZ7 A;  2VPF A;  5HI4 A;  1ZKZ A;  4AY9 A;  1B8M B;  1QFW A;  3E07 A;  1KTZ A;  4QCI C;  3MJK A;  4EC7 A;  2GNN A;  1TZH V;  5BQB A;  2PJY A;  4EFV A;  3P9W A;  1B98 A;  1REU A;  2FJH V;  1M4U A;  1QTY R;  4LXS J;  5HK5 E;  2R52 A;  5BQ8 B;  4MID A;  4ZBN A;  1BET A;  1JPY A;  5HHC A;  1B8M A;  1HD4 A;  3JVF A;  4EDX V;  2QCQ A;  2BHK A;  4UI1 A;  4EAX A;  2GYR A;  1NT3 A;  2GH0 C;  1MJV A;  4KXZ A;  1WQ9 B; 
#chains in the Genus database with same CATH topology
 2ARP A;  1LXI A;  4N1D A;  3S1B V;  1KLC A;  1ES7 A;  3QB4 A;  2P6A A;  1FL7 B;  2GYZ A;  4UHY A;  5BQE A;  1AGQ A;  2H64 A;  2XV7 A;  5HHD A;  1VPP V;  3KFD A;  1WQ9 A;  2KD3 A;  3SEK B;  1KAT W;  5FV2 V;  1HRP A;  1XWD B;  3HH2 A;  5BPU A;  4QHU C;  5HI3 A;  2GOO A;  1FL7 A;  5JZ7 A;  1TFG A;  5HHV A;  1WAQ A;  1FLT V;  1SG1 A;  1TGK A;  5HI5 A;  1KLA A;  5F3H I;  1XWD A;  2C7W A;  1VPF A;  3EVS B;  3BDY V;  1MKK A;  1MKG A;  4HQX A;  4YCG C;  3B4V A;  1AOC A;  1BND B;  1NYS B;  4WPB A;  5AEJ A;  4HQU A;  2QJA A;  2XAC A;  1WWW V;  1B8K A;  5E4G A;  1RV6 V;  1BJ1 V;  4MQW B;  4XPJ A;  4MPL A;  3BUK A;  3RJR A;  1S4Y B;  1BND A;  2QJB A;  1NYU B;  1HCN B;  1TZI V;  1M4U L;  1BTG A;  2R53 A;  2H62 A;  2ARV A;  1SGF B;  1WQ8 A;  2TGI A;  3BMP A;  3EO1 C;  5FV1 V;  4GLS E;  4MQW A;  2B0U A;  1PDG A;  1BMP A;  3FUB B;  5F3B C;  5BQ8 D;  1LX5 A;  2IFG E;  1HCN A;  4HR9 A;  4X1J A;  2FJG V;  3S1K V;  2VXS A;  2ASK A;  5BQ8 A;  1HCF A;  5HHX A;  4FAO A;  4UHZ A;  4UI2 B;  2QJ9 A;  4EDW V;  4QAF C;  3IJ2 A;  1FZV A;  4GLN E;  4BV4 L;  4YCI C;  1E9J A;  2QR0 C;  4KV5 A;  4HSA A;  5BQC A;  4UI0 A;  3V6B A;  3QTK A;  3BK3 A;  2X1X E;  4LXR J;  4AY9 B;  1REW A;  1QFW B;  3MJG A;  3V2A A;  4KZN A;  5BQE B;  5HK5 A;  2QCW A;  2V5E B;  2X1W A;  1TGJ A;  1CZ8 V;  4ZFF C;  1HRP B;  2VWE A;  1DZ7 A;  2VPF A;  5HI4 A;  1ZKZ A;  4AY9 A;  1B8M B;  1QFW A;  3E07 A;  1KTZ A;  4QCI C;  3MJK A;  4EC7 A;  2GNN A;  1TZH V;  5BQB A;  2PJY A;  4EFV A;  3P9W A;  1B98 A;  1REU A;  2FJH V;  1M4U A;  1QTY R;  4LXS J;  5HK5 E;  2R52 A;  5BQ8 B;  4MID A;  4ZBN A;  1BET A;  1JPY A;  5HHC A;  1B8M A;  1HD4 A;  3JVF A;  4EDX V;  2QCQ A;  2BHK A;  4UI1 A;  4EAX A;  2GYR A;  1NT3 A;  2GH0 C;  1MJV A;  4KXZ A;  1WQ9 B; 
#chains in the Genus database with same CATH homology
 2ARP A;  1LXI A;  4N1D A;  3S1B V;  1KLC A;  1ES7 A;  3QB4 A;  2P6A A;  1FL7 B;  2GYZ A;  4UHY A;  5BQE A;  1AGQ A;  2H64 A;  2XV7 A;  5HHD A;  1VPP V;  3KFD A;  1WQ9 A;  2KD3 A;  3SEK B;  1KAT W;  5FV2 V;  1HRP A;  1XWD B;  3HH2 A;  5BPU A;  4QHU C;  5HI3 A;  2GOO A;  1FL7 A;  5JZ7 A;  1TFG A;  5HHV A;  1WAQ A;  1FLT V;  1SG1 A;  1TGK A;  5HI5 A;  1KLA A;  5F3H I;  1XWD A;  2C7W A;  1VPF A;  3EVS B;  3BDY V;  1MKK A;  1MKG A;  4HQX A;  4YCG C;  3B4V A;  1AOC A;  1BND B;  1NYS B;  4WPB A;  5AEJ A;  4HQU A;  2QJA A;  2XAC A;  1WWW V;  1B8K A;  5E4G A;  1RV6 V;  1BJ1 V;  4MQW B;  4XPJ A;  4MPL A;  3BUK A;  3RJR A;  1S4Y B;  1BND A;  2QJB A;  1NYU B;  1HCN B;  1TZI V;  1M4U L;  1BTG A;  2R53 A;  2H62 A;  2ARV A;  1SGF B;  1WQ8 A;  2TGI A;  3BMP A;  3EO1 C;  5FV1 V;  4GLS E;  4MQW A;  2B0U A;  1PDG A;  1BMP A;  3FUB B;  5F3B C;  5BQ8 D;  1LX5 A;  2IFG E;  1HCN A;  4HR9 A;  4X1J A;  2FJG V;  3S1K V;  2VXS A;  2ASK A;  5BQ8 A;  1HCF A;  5HHX A;  4FAO A;  4UHZ A;  4UI2 B;  2QJ9 A;  4EDW V;  4QAF C;  3IJ2 A;  1FZV A;  4GLN E;  4BV4 L;  4YCI C;  1E9J A;  2QR0 C;  4KV5 A;  4HSA A;  5BQC A;  4UI0 A;  3V6B A;  3QTK A;  3BK3 A;  2X1X E;  4LXR J;  4AY9 B;  1REW A;  1QFW B;  3MJG A;  3V2A A;  4KZN A;  5BQE B;  5HK5 A;  2QCW A;  2V5E B;  2X1W A;  1TGJ A;  1CZ8 V;  4ZFF C;  1HRP B;  2VWE A;  1DZ7 A;  2VPF A;  5HI4 A;  1ZKZ A;  4AY9 A;  1B8M B;  1QFW A;  3E07 A;  1KTZ A;  4QCI C;  3MJK A;  4EC7 A;  2GNN A;  1TZH V;  5BQB A;  2PJY A;  4EFV A;  3P9W A;  1B98 A;  1REU A;  2FJH V;  1M4U A;  1QTY R;  4LXS J;  5HK5 E;  2R52 A;  5BQ8 B;  4MID A;  4ZBN A;  1BET A;  1JPY A;  5HHC A;  1B8M A;  1HD4 A;  3JVF A;  4EDX V;  2QCQ A;  2BHK A;  4UI1 A;  4EAX A;  2GYR A;  1NT3 A;  2GH0 C;  1MJV A;  4KXZ A;  1WQ9 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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