3EPUA

Crystal structure of stm2138, a novel virulence chaperone in salmonella
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
136
structure length
134
Chain Sequence
MYSRADRLLRQFSLKLNTDSIVFDENRLCSFIIDNRYRILLTSTNSEYIMIYGFCGKPPDNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLALNFSLNESSVEKLECEIEVVIRSMENLYHILQDKGITLDTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords STM2138 Virulence Chaperone
publication title Structural analysis and quantitative proteomic interactome of a novel virulence chaperone in Salmonella
rcsb
source organism Salmonella typhimurium
total genus 35
structure length 134
sequence length 136
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05932 CesT Tir chaperone protein (CesT) family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3epuA00
1TTWA 2BSJA 1L2WA 4AKXA 1S28A 2BSIA 4GF3A 1JYAA 1K3EA 1XKPB 2BHOA 4G6TA 1N5BA 3EPUA 2PLGA 1RY9A 4JMFB 1XKPC 1JYOA 1K3SA 3CXJA 1K6ZA 2FM8A 2XGAA 2BSHA 3KXYA 3TU3A
chains in the Genus database with same CATH superfamily
3DWLF 1TTWA 2KC5A 3DXMF 2P9ID 1TYQF 1K8KF 4JD2D 2BSJA 3UKRD 2P9LF 4EBRA 2P9PD 1L2WA 4AKXA 4GSLC 1S28A 3RSED 2BSIA 2P9IF 4GF3A 3UKRF 3VX7B 1JYAA 3KXYA 2P9KD 4JD2F 1K3EA 3ULED 1XKPB 2BHOA 2P9PF 4G6TA 1N5BA 3RSEF 3EPUA 3UKUD 2PLGA 2P9SD 1RY9A 2P9KF 4XEID 2OD0A 4JMFB 1XKPC 3ULEF 1JYOA 1K3SA 2P9ND 1U2VD 2P9SF 3DXKF 3UKUF 3CXJA 4H5BA 3DXKD 2P9UD 2DYTA 4XEIF 3DXMD 1K6ZA 2FM8A 1TYQD 1U2VF 2BSHA 2LPUA 2XGAA 2P9NF 3DWLD 3VX8B 1K8KD 2MQDA 3TU3A 2P9LD 2P9UF
chains in the Genus database with same CATH topology
3DWLF 1TTWA 2KC5A 3DXMF 2P9ID 1TYQF 1K8KF 4JD2D 2BSJA 3UKRD 2P9LF 4EBRA 2P9PD 1L2WA 4AKXA 4GSLC 1S28A 3RSED 2BSIA 2P9IF 4GF3A 3UKRF 3VX7B 1JYAA 3KXYA 2P9KD 4JD2F 1K3EA 3ULED 1XKPB 2BHOA 2P9PF 4G6TA 1N5BA 3RSEF 3EPUA 3UKUD 2PLGA 2P9SD 1RY9A 2P9KF 4XEID 4JMFB 1XKPC 3ULEF 1JYOA 1K3SA 2P9ND 1U2VD 2P9SF 3DXKF 3UKUF 3CXJA 4H5BA 3DXKD 2P9UD 2DYTA 4XEIF 3DXMD 1K6ZA 2FM8A 1TYQD 1U2VF 2BSHA 2LPUA 2XGAA 2P9NF 3DWLD 3VX8B 1K8KD 2MQDA 3TU3A 2P9LD 2P9UF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TTW A;  2BSJ A;  1L2W A;  4AKX A;  1S28 A;  2BSI A;  4GF3 A;  1JYA A;  1K3E A;  1XKP B;  2BHO A;  4G6T A;  1N5B A;  3EPU A;  2PLG A;  1RY9 A;  4JMF B;  1XKP C;  1JYO A;  1K3S A;  3CXJ A;  1K6Z A;  2FM8 A;  2XGA A;  2BSH A;  3KXY A;  3TU3 A; 
#chains in the Genus database with same CATH topology
 3DWL F;  1TTW A;  2KC5 A;  3DXM F;  2P9I D;  1TYQ F;  1K8K F;  4JD2 D;  2BSJ A;  3UKR D;  2P9L F;  4EBR A;  2P9P D;  1L2W A;  4AKX A;  4GSL C;  1S28 A;  3RSE D;  2BSI A;  2P9I F;  4GF3 A;  3UKR F;  3VX7 B;  1JYA A;  3KXY A;  2P9K D;  4JD2 F;  1K3E A;  3ULE D;  1XKP B;  2BHO A;  2P9P F;  4G6T A;  1N5B A;  3RSE F;  3EPU A;  3UKU D;  2PLG A;  2P9S D;  1RY9 A;  2P9K F;  4XEI D;  2OD0 A;  4JMF B;  1XKP C;  3ULE F;  1JYO A;  1K3S A;  2P9N D;  1U2V D;  2P9S F;  3DXK F;  3UKU F;  3CXJ A;  4H5B A;  3DXK D;  2P9U D;  2DYT A;  4XEI F;  3DXM D;  1K6Z A;  2FM8 A;  1TYQ D;  1U2V F;  2BSH A;  2LPU A;  2XGA A;  2P9N F;  3DWL D;  3VX8 B;  1K8K D;  2MQD A;  3TU3 A;  2P9L D;  2P9U F; 
#chains in the Genus database with same CATH homology
 3DWL F;  1TTW A;  2KC5 A;  3DXM F;  2P9I D;  1TYQ F;  1K8K F;  4JD2 D;  2BSJ A;  3UKR D;  2P9L F;  4EBR A;  2P9P D;  1L2W A;  4AKX A;  4GSL C;  1S28 A;  3RSE D;  2BSI A;  2P9I F;  4GF3 A;  3UKR F;  3VX7 B;  1JYA A;  3KXY A;  2P9K D;  4JD2 F;  1K3E A;  3ULE D;  1XKP B;  2BHO A;  2P9P F;  4G6T A;  1N5B A;  3RSE F;  3EPU A;  3UKU D;  2PLG A;  2P9S D;  1RY9 A;  2P9K F;  4XEI D;  4JMF B;  1XKP C;  3ULE F;  1JYO A;  1K3S A;  2P9N D;  1U2V D;  2P9S F;  3DXK F;  3UKU F;  3CXJ A;  4H5B A;  3DXK D;  2P9U D;  2DYT A;  4XEI F;  3DXM D;  1K6Z A;  2FM8 A;  1TYQ D;  1U2V F;  2BSH A;  2LPU A;  2XGA A;  2P9N F;  3DWL D;  3VX8 B;  1K8K D;  2MQD A;  3TU3 A;  2P9L D;  2P9U F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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