3EQQA

Apo toluene 2,3-dioxygenase
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
430
structure length
416
Chain Sequence
WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMTSHLSGILAGLPEPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTSPDWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
molecule keywords Benzene 1,2-dioxygenase subunit alpha
total genus 119
structure length 416
sequence length 430
ec nomenclature ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3eqqA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3eqqA01
4PV1D 1KB9E 5HL4A 4HJLA 4P1CH 2XSOA 1EZVE 1BCCE 5KKZC 1NDOA 4NB8D 4H0LD 1SQPE 2DE5A 3VMIA 3H1LE 3VCPA 3L73E 4HKVA 2FYNC 3H1KE 2NUMA 4PD4E 4NBCA 1UUVA 4QUQA 3GL0A 4NBFA 2JO6A 2YFLA 1P84E 4HM2A 4NBBD 3GTSA 1SQBE 3GB4A 4HM6A 4HM5A 4OGQD 2HMKA 3DQYA 4QDDA 2XR8A 2ZT9D 1L0NE 4NBDD 3VCAA 3CXHE 1JM1A 1SQQE 3GZYA 4HM8A 1Z03A 3H1IE 4H13D 1ULJA 2BMQA 4NBAD 4NBBA 1RFSA 1NU1E 2NVEA 2ZYLA 2QJPC 3CX5E 1FQTA 2BMOA 1Z01A 2HMLA 3H1JE 1VCKA 4NBHD 4P1BH 3FOUA 3D89A 2YFIA 4EMJB 3L75E 2NVGA 2DE7A 1VM9A 2E4PA 2I7FA 4QDCA 2XRXA 1UUWA 4NB9D 2YFJA 2XSHA 2HMOA 3GL2A 1ZRTE 1O7NA 4NBED 2E74D 3VMGA 2BCCE 1BE3E 3BCCE 4NBFD 1WW9A 2E4QA 3GTEA 2HMJA 4HM1A 2CKFA 2BMRA 4NBEA 1EG9A 2HMNA 3L71E 1Q90C 4NBDA 2FYUE 1RIEA 5KLVE 5CXMA 4NBAA 1O7HA 4NBGD 4NB8A 1L0LE 2GBXA 1O7GA 3VMHA 1VF5D 4HM4A 4AAYB 1NTME 1PPJE 2A06E 1ULIA 2DE6D 2Q3WA 2GBWA 4NBHA 2E75D 5AEWA 2YIUC 4QCKA 2QJYC 3GCEA 2DE5D 3VMID 3AZCA 3H1HE 1NTKE 4HM7A 1SQVE 5KLIC 1PP9E 5BOKA 1G8KB 1KYOE 4QURA 4QDFB 1Z02A 1SQXE 4H44D 3L70E 3VMGD 2DE6A 3GOBA 3N0QA 2DE7D 1NYKA 3GCFA 2NUKA 2B24A 4NBGA 2QPZA 4HM0A 4U3FE 3GZXA 4AIVA 1G8JB 2E76D 1O7PA 3VMHD 4QDFA 3C0DA 1O7WA 3GKEA 2HMMA 2B1XA 3L72E 5AEUA 4QUPA 2YVJB 2NWFA 3L74E 2QJKC 3EN1A 2JZAA 4NBCD 1SJGA 2D2CD 3CWBE 1WQLA 3EQQA 4HM3A 4NB9A 1NTZE 3TGUE 3GKQA 1O7MA 2IBZE 2NVFA
chains in the Genus database with same CATH superfamily
4PV1D 1KB9E 5HL4A 4HJLA 4P1CH 2XSOA 1EZVE 1BCCE 5KKZC 1NDOA 4NB8D 4H0LD 1SQPE 2DE5A 3VMIA 3H1LE 3VCPA 3L73E 4HKVA 2FYNC 3H1KE 2NUMA 4PD4E 4NBCA 1UUVA 4QUQA 3GL0A 4NBFA 2JO6A 2YFLA 1P84E 4HM2A 4NBBD 3GTSA 1SQBE 3GB4A 4HM6A 4HM5A 4OGQD 2HMKA 3DQYA 4QDDA 2XR8A 2ZT9D 1L0NE 4NBDD 3VCAA 3CXHE 1JM1A 1SQQE 3GZYA 4HM8A 1Z03A 3H1IE 4H13D 1ULJA 2BMQA 4NBAD 4NBBA 1RFSA 1NU1E 2NVEA 2ZYLA 2QJPC 3CX5E 1FQTA 2BMOA 1Z01A 2HMLA 3H1JE 1VCKA 4NBHD 4P1BH 3FOUA 3D89A 2YFIA 4EMJB 3L75E 2NVGA 2DE7A 1VM9A 2E4PA 2I7FA 4QDCA 2XRXA 1UUWA 4NB9D 2YFJA 2XSHA 2HMOA 3GL2A 1ZRTE 1O7NA 4NBED 2E74D 3VMGA 2BCCE 1BE3E 3BCCE 4NBFD 1WW9A 2E4QA 3GTEA 2HMJA 4HM1A 2CKFA 2BMRA 4NBEA 1EG9A 2HMNA 3L71E 1Q90C 4NBDA 2FYUE 1RIEA 5KLVE 5CXMA 4NBAA 1O7HA 4NBGD 4NB8A 1L0LE 2GBXA 1O7GA 3VMHA 1VF5D 4HM4A 4AAYB 1NTME 1PPJE 2A06E 1ULIA 2DE6D 2Q3WA 2GBWA 4NBHA 2E75D 5AEWA 2YIUC 4QCKA 2QJYC 3GCEA 2DE5D 3VMID 3AZCA 3H1HE 1NTKE 4HM7A 1SQVE 5KLIC 1PP9E 5BOKA 1G8KB 1KYOE 4QURA 4QDFB 1Z02A 1SQXE 4H44D 3L70E 3VMGD 2DE6A 3GOBA 3N0QA 2DE7D 1NYKA 3GCFA 2NUKA 2B24A 4NBGA 2QPZA 4HM0A 4U3FE 3GZXA 4AIVA 1G8JB 2E76D 1O7PA 3VMHD 4QDFA 3C0DA 1O7WA 3GKEA 2HMMA 2B1XA 3L72E 5AEUA 4QUPA 2YVJB 2NWFA 3L74E 2QJKC 3EN1A 2JZAA 4NBCD 1SJGA 2D2CD 3CWBE 1WQLA 3EQQA 4HM3A 4NB9A 1NTZE 3TGUE 3GKQA 1O7MA 2IBZE 2NVFA
chains in the Genus database with same CATH topology
4PV1D 1KB9E 5HL4A 4HJLA 4P1CH 2XSOA 1EZVE 1BCCE 5KKZC 1NDOA 4NB8D 4H0LD 1SQPE 2DE5A 3VMIA 3H1LE 3VCPA 3L73E 4HKVA 2FYNC 3H1KE 2NUMA 4PD4E 4NBCA 1UUVA 4QUQA 3GL0A 4NBFA 2JO6A 2YFLA 1P84E 4HM2A 4NBBD 3GTSA 1SQBE 3GB4A 4HM6A 4HM5A 4OGQD 2HMKA 3DQYA 4QDDA 2XR8A 2ZT9D 1L0NE 4NBDD 3VCAA 3CXHE 1JM1A 1SQQE 3GZYA 4HM8A 1Z03A 3H1IE 4H13D 1ULJA 2BMQA 4NBAD 4NBBA 1RFSA 1NU1E 2NVEA 2ZYLA 2QJPC 3CX5E 1FQTA 2BMOA 1Z01A 2HMLA 3H1JE 1VCKA 4NBHD 4P1BH 3FOUA 3D89A 2YFIA 4EMJB 3L75E 2NVGA 2DE7A 1VM9A 2E4PA 2I7FA 4QDCA 2XRXA 1UUWA 4NB9D 2YFJA 2XSHA 2HMOA 3GL2A 1ZRTE 1O7NA 4NBED 2E74D 3VMGA 2BCCE 1BE3E 3BCCE 4NBFD 1WW9A 2E4QA 3GTEA 2HMJA 4HM1A 2CKFA 2BMRA 4NBEA 1EG9A 2HMNA 3L71E 1Q90C 4NBDA 2FYUE 1RIEA 5KLVE 5CXMA 4NBAA 1O7HA 4NBGD 4NB8A 1L0LE 2GBXA 1O7GA 3VMHA 1VF5D 4HM4A 4AAYB 1NTME 1PPJE 2A06E 1ULIA 2DE6D 2Q3WA 2GBWA 4NBHA 2E75D 5AEWA 2YIUC 4QCKA 2QJYC 3GCEA 2DE5D 3VMID 3AZCA 3H1HE 1NTKE 4HM7A 1SQVE 5KLIC 1PP9E 5BOKA 1G8KB 1KYOE 4QURA 4QDFB 1Z02A 1SQXE 4H44D 3L70E 3VMGD 2DE6A 3GOBA 3N0QA 2DE7D 1NYKA 3GCFA 2NUKA 2B24A 4NBGA 2QPZA 4HM0A 4U3FE 3GZXA 4AIVA 1G8JB 2E76D 1O7PA 3VMHD 4QDFA 3C0DA 1O7WA 3GKEA 2HMMA 2B1XA 3L72E 5AEUA 4QUPA 2YVJB 2NWFA 3L74E 2QJKC 3EN1A 2JZAA 4NBCD 1SJGA 2D2CD 3CWBE 1WQLA 3EQQA 4HM3A 4NB9A 1NTZE 3TGUE 3GKQA 1O7MA 2IBZE 2NVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PV1 D;  1KB9 E;  5HL4 A;  4HJL A;  4P1C H;  2XSO A;  1EZV E;  1BCC E;  5KKZ C;  1NDO A;  4NB8 D;  4H0L D;  1SQP E;  2DE5 A;  3VMI A;  3H1L E;  3VCP A;  3L73 E;  4HKV A;  2FYN C;  3H1K E;  2NUM A;  4PD4 E;  4NBC A;  1UUV A;  4QUQ A;  3GL0 A;  4NBF A;  2JO6 A;  2YFL A;  1P84 E;  4HM2 A;  4NBB D;  3GTS A;  1SQB E;  3GB4 A;  4HM6 A;  4HM5 A;  4OGQ D;  2HMK A;  3DQY A;  4QDD A;  2XR8 A;  2ZT9 D;  1L0N E;  4NBD D;  3VCA A;  3CXH E;  1JM1 A;  1SQQ E;  3GZY A;  4HM8 A;  1Z03 A;  3H1I E;  4H13 D;  1ULJ A;  2BMQ A;  4NBA D;  4NBB A;  1RFS A;  1NU1 E;  2NVE A;  2ZYL A;  2QJP C;  3CX5 E;  1FQT A;  2BMO A;  1Z01 A;  2HML A;  3H1J E;  1VCK A;  4NBH D;  4P1B H;  3FOU A;  3D89 A;  2YFI A;  4EMJ B;  3L75 E;  2NVG A;  2DE7 A;  1VM9 A;  2E4P A;  2I7F A;  4QDC A;  2XRX A;  1UUW A;  4NB9 D;  2YFJ A;  2XSH A;  2HMO A;  3GL2 A;  1ZRT E;  1O7N A;  4NBE D;  2E74 D;  3VMG A;  2BCC E;  1BE3 E;  3BCC E;  4NBF D;  1WW9 A;  2E4Q A;  3GTE A;  2HMJ A;  4HM1 A;  2CKF A;  2BMR A;  4NBE A;  1EG9 A;  2HMN A;  3L71 E;  1Q90 C;  4NBD A;  2FYU E;  1RIE A;  5KLV E;  5CXM A;  4NBA A;  1O7H A;  4NBG D;  4NB8 A;  1L0L E;  2GBX A;  1O7G A;  3VMH A;  1VF5 D;  4HM4 A;  4AAY B;  1NTM E;  1PPJ E;  2A06 E;  1ULI A;  2DE6 D;  2Q3W A;  2GBW A;  4NBH A;  2E75 D;  5AEW A;  2YIU C;  4QCK A;  2QJY C;  3GCE A;  2DE5 D;  3VMI D;  3AZC A;  3H1H E;  1NTK E;  4HM7 A;  1SQV E;  5KLI C;  1PP9 E;  5BOK A;  1G8K B;  1KYO E;  4QUR A;  4QDF B;  1Z02 A;  1SQX E;  4H44 D;  3L70 E;  3VMG D;  2DE6 A;  3GOB A;  3N0Q A;  2DE7 D;  1NYK A;  3GCF A;  2NUK A;  2B24 A;  4NBG A;  2QPZ A;  4HM0 A;  4U3F E;  3GZX A;  4AIV A;  1G8J B;  2E76 D;  1O7P A;  3VMH D;  4QDF A;  3C0D A;  1O7W A;  3GKE A;  2HMM A;  2B1X A;  3L72 E;  5AEU A;  4QUP A;  2YVJ B;  2NWF A;  3L74 E;  2QJK C;  3EN1 A;  2JZA A;  4NBC D;  1SJG A;  2D2C D;  3CWB E;  1WQL A;  3EQQ A;  4HM3 A;  4NB9 A;  1NTZ E;  3TGU E;  3GKQ A;  1O7M A;  2IBZ E;  2NVF A; 
#chains in the Genus database with same CATH topology
 4PV1 D;  1KB9 E;  5HL4 A;  4HJL A;  4P1C H;  2XSO A;  1EZV E;  1BCC E;  5KKZ C;  1NDO A;  4NB8 D;  4H0L D;  1SQP E;  2DE5 A;  3VMI A;  3H1L E;  3VCP A;  3L73 E;  4HKV A;  2FYN C;  3H1K E;  2NUM A;  4PD4 E;  4NBC A;  1UUV A;  4QUQ A;  3GL0 A;  4NBF A;  2JO6 A;  2YFL A;  1P84 E;  4HM2 A;  4NBB D;  3GTS A;  1SQB E;  3GB4 A;  4HM6 A;  4HM5 A;  4OGQ D;  2HMK A;  3DQY A;  4QDD A;  2XR8 A;  2ZT9 D;  1L0N E;  4NBD D;  3VCA A;  3CXH E;  1JM1 A;  1SQQ E;  3GZY A;  4HM8 A;  1Z03 A;  3H1I E;  4H13 D;  1ULJ A;  2BMQ A;  4NBA D;  4NBB A;  1RFS A;  1NU1 E;  2NVE A;  2ZYL A;  2QJP C;  3CX5 E;  1FQT A;  2BMO A;  1Z01 A;  2HML A;  3H1J E;  1VCK A;  4NBH D;  4P1B H;  3FOU A;  3D89 A;  2YFI A;  4EMJ B;  3L75 E;  2NVG A;  2DE7 A;  1VM9 A;  2E4P A;  2I7F A;  4QDC A;  2XRX A;  1UUW A;  4NB9 D;  2YFJ A;  2XSH A;  2HMO A;  3GL2 A;  1ZRT E;  1O7N A;  4NBE D;  2E74 D;  3VMG A;  2BCC E;  1BE3 E;  3BCC E;  4NBF D;  1WW9 A;  2E4Q A;  3GTE A;  2HMJ A;  4HM1 A;  2CKF A;  2BMR A;  4NBE A;  1EG9 A;  2HMN A;  3L71 E;  1Q90 C;  4NBD A;  2FYU E;  1RIE A;  5KLV E;  5CXM A;  4NBA A;  1O7H A;  4NBG D;  4NB8 A;  1L0L E;  2GBX A;  1O7G A;  3VMH A;  1VF5 D;  4HM4 A;  4AAY B;  1NTM E;  1PPJ E;  2A06 E;  1ULI A;  2DE6 D;  2Q3W A;  2GBW A;  4NBH A;  2E75 D;  5AEW A;  2YIU C;  4QCK A;  2QJY C;  3GCE A;  2DE5 D;  3VMI D;  3AZC A;  3H1H E;  1NTK E;  4HM7 A;  1SQV E;  5KLI C;  1PP9 E;  5BOK A;  1G8K B;  1KYO E;  4QUR A;  4QDF B;  1Z02 A;  1SQX E;  4H44 D;  3L70 E;  3VMG D;  2DE6 A;  3GOB A;  3N0Q A;  2DE7 D;  1NYK A;  3GCF A;  2NUK A;  2B24 A;  4NBG A;  2QPZ A;  4HM0 A;  4U3F E;  3GZX A;  4AIV A;  1G8J B;  2E76 D;  1O7P A;  3VMH D;  4QDF A;  3C0D A;  1O7W A;  3GKE A;  2HMM A;  2B1X A;  3L72 E;  5AEU A;  4QUP A;  2YVJ B;  2NWF A;  3L74 E;  2QJK C;  3EN1 A;  2JZA A;  4NBC D;  1SJG A;  2D2C D;  3CWB E;  1WQL A;  3EQQ A;  4HM3 A;  4NB9 A;  1NTZ E;  3TGU E;  3GKQ A;  1O7M A;  2IBZ E;  2NVF A; 
#chains in the Genus database with same CATH homology
 4PV1 D;  1KB9 E;  5HL4 A;  4HJL A;  4P1C H;  2XSO A;  1EZV E;  1BCC E;  5KKZ C;  1NDO A;  4NB8 D;  4H0L D;  1SQP E;  2DE5 A;  3VMI A;  3H1L E;  3VCP A;  3L73 E;  4HKV A;  2FYN C;  3H1K E;  2NUM A;  4PD4 E;  4NBC A;  1UUV A;  4QUQ A;  3GL0 A;  4NBF A;  2JO6 A;  2YFL A;  1P84 E;  4HM2 A;  4NBB D;  3GTS A;  1SQB E;  3GB4 A;  4HM6 A;  4HM5 A;  4OGQ D;  2HMK A;  3DQY A;  4QDD A;  2XR8 A;  2ZT9 D;  1L0N E;  4NBD D;  3VCA A;  3CXH E;  1JM1 A;  1SQQ E;  3GZY A;  4HM8 A;  1Z03 A;  3H1I E;  4H13 D;  1ULJ A;  2BMQ A;  4NBA D;  4NBB A;  1RFS A;  1NU1 E;  2NVE A;  2ZYL A;  2QJP C;  3CX5 E;  1FQT A;  2BMO A;  1Z01 A;  2HML A;  3H1J E;  1VCK A;  4NBH D;  4P1B H;  3FOU A;  3D89 A;  2YFI A;  4EMJ B;  3L75 E;  2NVG A;  2DE7 A;  1VM9 A;  2E4P A;  2I7F A;  4QDC A;  2XRX A;  1UUW A;  4NB9 D;  2YFJ A;  2XSH A;  2HMO A;  3GL2 A;  1ZRT E;  1O7N A;  4NBE D;  2E74 D;  3VMG A;  2BCC E;  1BE3 E;  3BCC E;  4NBF D;  1WW9 A;  2E4Q A;  3GTE A;  2HMJ A;  4HM1 A;  2CKF A;  2BMR A;  4NBE A;  1EG9 A;  2HMN A;  3L71 E;  1Q90 C;  4NBD A;  2FYU E;  1RIE A;  5KLV E;  5CXM A;  4NBA A;  1O7H A;  4NBG D;  4NB8 A;  1L0L E;  2GBX A;  1O7G A;  3VMH A;  1VF5 D;  4HM4 A;  4AAY B;  1NTM E;  1PPJ E;  2A06 E;  1ULI A;  2DE6 D;  2Q3W A;  2GBW A;  4NBH A;  2E75 D;  5AEW A;  2YIU C;  4QCK A;  2QJY C;  3GCE A;  2DE5 D;  3VMI D;  3AZC A;  3H1H E;  1NTK E;  4HM7 A;  1SQV E;  5KLI C;  1PP9 E;  5BOK A;  1G8K B;  1KYO E;  4QUR A;  4QDF B;  1Z02 A;  1SQX E;  4H44 D;  3L70 E;  3VMG D;  2DE6 A;  3GOB A;  3N0Q A;  2DE7 D;  1NYK A;  3GCF A;  2NUK A;  2B24 A;  4NBG A;  2QPZ A;  4HM0 A;  4U3F E;  3GZX A;  4AIV A;  1G8J B;  2E76 D;  1O7P A;  3VMH D;  4QDF A;  3C0D A;  1O7W A;  3GKE A;  2HMM A;  2B1X A;  3L72 E;  5AEU A;  4QUP A;  2YVJ B;  2NWF A;  3L74 E;  2QJK C;  3EN1 A;  2JZA A;  4NBC D;  1SJG A;  2D2C D;  3CWB E;  1WQL A;  3EQQ A;  4HM3 A;  4NB9 A;  1NTZ E;  3TGU E;  3GKQ A;  1O7M A;  2IBZ E;  2NVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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