3EQTA

Crystal structure of human lgp2 c-terminal domain in complex with dsrna
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
127
structure length
127
Chain Sequence
QFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAENL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna binding protein/rna
molecule keywords ATP-dependent RNA helicase DHX58
publication title The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 3eqtA00
3NCUA 2RMJA 2QFDA 5F9FA 2RQBA 4AY2A 4A2XA 3EQTA 5F9HA 2RQAA 3ZD7A 3LRRA 3ZD6A 2W4RA 2YKGA 3GA3A 5F98A 5E3HA 4BPBA 2QFBA 4A2VA 3LRNA 3OG8A
chains in the Genus database with same CATH superfamily
4TZ4C 3NCUA 2FU5A 2RMJA 4TZCA 4TZUA 2QFDA 1H6QA 5F9FA 2RQBA 3HCJA 4AY2A 2K8DA 4A2XA 3EQTA 5F9HA 4CI3B 3MAOA 3CXKA 3CEZA 3E0MA 3FACA 2LVLA 2RQAA 3HCGA 3WX1A 3ZD7A 3WX2A 2KV1A 3DJMA 4CI1B 3ZD6A 3LRRA 2W4RA 4V2ZA 2YKGA 3GA3A 4V30A 1HXRA 2HR9A 4V31A 1TXJA 3E0OA 5F98A 3OG8A 1L1DA 5AMHA 5E3HA 1FWQA 3P3KA 4CI2B 3HCIA 4BPBA 2QFBA 2KWBA 2KZNA 3HCHA 1YZ1A 4V2YA 4A2VA 3EBMA 3LRNA 2LOYA 1H7YA
chains in the Genus database with same CATH topology
3NCUA 2FU5A 2RMJA 2QFDA 1H6QA 5F9FA 2RQBA 4AY2A 4A2XA 3EQTA 5F9HA 3FACA 2LVLA 2RQAA 3ZD7A 3DJMA 3ZD6A 3LRRA 2W4RA 2YKGA 3GA3A 1HXRA 2HR9A 1TXJA 5F98A 5E3HA 4BPBA 1FWQA 3P3KA 2QFBA 2KWBA 1YZ1A 4A2VA 3LRNA 3EBMA 3OG8A 2LOYA 1H7YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NCU A;  2RMJ A;  2QFD A;  5F9F A;  2RQB A;  4AY2 A;  4A2X A;  3EQT A;  5F9H A;  2RQA A;  3ZD7 A;  3LRR A;  3ZD6 A;  2W4R A;  2YKG A;  3GA3 A;  5F98 A;  5E3H A;  4BPB A;  2QFB A;  4A2V A;  3LRN A;  3OG8 A; 
#chains in the Genus database with same CATH topology
 4TZ4 C;  3NCU A;  2FU5 A;  2RMJ A;  4TZC A;  4TZU A;  2QFD A;  1H6Q A;  5F9F A;  2RQB A;  3HCJ A;  4AY2 A;  2K8D A;  4A2X A;  3EQT A;  5F9H A;  4CI3 B;  3MAO A;  3CXK A;  3CEZ A;  3E0M A;  3FAC A;  2LVL A;  2RQA A;  3HCG A;  3WX1 A;  3ZD7 A;  3WX2 A;  2KV1 A;  3DJM A;  4CI1 B;  3ZD6 A;  3LRR A;  2W4R A;  4V2Z A;  2YKG A;  3GA3 A;  4V30 A;  1HXR A;  2HR9 A;  4V31 A;  1TXJ A;  3E0O A;  5F98 A;  3OG8 A;  1L1D A;  5AMH A;  5E3H A;  1FWQ A;  3P3K A;  4CI2 B;  3HCI A;  4BPB A;  2QFB A;  2KWB A;  2KZN A;  3HCH A;  1YZ1 A;  4V2Y A;  4A2V A;  3EBM A;  3LRN A;  2LOY A;  1H7Y A; 
#chains in the Genus database with same CATH homology
 3NCU A;  2FU5 A;  2RMJ A;  2QFD A;  1H6Q A;  5F9F A;  2RQB A;  4AY2 A;  4A2X A;  3EQT A;  5F9H A;  3FAC A;  2LVL A;  2RQA A;  3ZD7 A;  3DJM A;  3ZD6 A;  3LRR A;  2W4R A;  2YKG A;  3GA3 A;  1HXR A;  2HR9 A;  1TXJ A;  5F98 A;  5E3H A;  4BPB A;  1FWQ A;  3P3K A;  2QFB A;  2KWB A;  1YZ1 A;  4A2V A;  3LRN A;  3EBM A;  3OG8 A;  2LOY A;  1H7Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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