3ERIA

First structural evidence of substrate specificity in mammalian peroxidases: crystal structures of substrate complexes with lactoperoxidases from two different species
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Structural Evidence of Substrate Specificity in Mammalian Peroxidases: STRUCTURE OF THE THIOCYANATE COMPLEX WITH LACTOPEROXIDASE AND ITS INTERACTIONS AT 2.4 A RESOLUTION
pubmed doi rcsb
total genus 186
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2008-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3eriA00
1HT8A 2GJMA 1FE2A 3OLUA 3R5OA 2QPKA 3FNLA 3NAKA 2AYLA 2OYEP 3S4FA 4KVKA 4RRYA 1CXPC 1DDXA 1EQHA 3Q9KA 4NJBA 2EFBA 2O86A 5IKVA 4RUTA 5FDQA 2Z5ZA 3V6QA 5FF1A 1U67A 3NT1A 5GH0A 3BXIA 3QL6A 3Q7DA 4M10A 3QF1A 3NYHA 2QRBA 4RS0A 4PNXA 3PY4A 3F9PC 4OEKA 4O1ZA 4OTYA 4COXA 3ZS0C 3RR3A 4HHSA 3HS6A 3GCLA 3N8XA 3N8FA 4KVJA 1MYPC 1EQGA 2OYUP 1EBVA 3GCKA 1MHLC 3PGHA 4GM7A 3NTBA 3N8WA 5GLSA 4GN6A 4Z0LA 5F19A 5FIWC 1PTHA 3ERIA 5JW1A 3MDLA 1HT5A 2OJVA 1PGEA 1PXXA 5HPWA 3N8VA 3NTGA 3NIUA 4M11A 4Y55A 2EHAA 3N8YA 3LN0A 3LN1A 1CX2A 3OLTA 3GCJA 4DL1C 3I6NA 2PT3A 1DNWC 3RKEA 3R4XA 4NT3A 4OTJA 3TZIA 1D7WC 1IGXA 4KSZA 3R5QA 4RRXA 3R55A 3OGWA 5B72A 3KRQA 1IGZA 1DIYA 4PH9A 3TGYA 3ZS1C 2PUMA 2IKCA 3KK6A 1DNUC 5F1AA 5COXA 4IG5A 3SXVA 3N8WB 4C1MC 3GC1A 3QMOA 3UBAA 3ERHA 3FAQA 4FM5A 4N7AA 3QH0A 1D2VC 2R5LA 3KRKA 5IKQA 4E1GA 4QJQA 6COXA 2NQXA 4RRWA 1CQEA 1Q4GA 4HHRA 1D5LC 3HS7A 4KVLA 3N8YB 1PRHA 3MQEA 2E9EA 5KIRA 2IPSA 5JVYA 2QQTA 3HS5A 4LJJA 5IKTA 4MSFA 5IKRA 4QYQA 1CVUA 4RRZA 5JVZA 3N8ZA
chains in the Genus database with same CATH superfamily
1HT8A 2GJMA 1FE2A 3OLUA 3R5OA 2QPKA 3FNLA 3NAKA 2AYLA 2OYEP 3S4FA 4KVKA 4RRYA 1CXPC 1DDXA 1EQHA 3Q9KA 4NJBA 2EFBA 2O86A 5IKVA 4RUTA 5FDQA 2Z5ZA 3V6QA 5FF1A 1U67A 3NT1A 5GH0A 3BXIA 3QL6A 3Q7DA 4M10A 3QF1A 3NYHA 2QRBA 4RS0A 4PNXA 3PY4A 3F9PC 4OEKA 4O1ZA 4OTYA 4COXA 3ZS0C 3RR3A 4HHSA 3HS6A 3GCLA 3N8XA 3N8FA 4KVJA 1MYPC 1EQGA 2OYUP 1EBVA 3GCKA 1MHLC 3PGHA 4GM7A 3NTBA 3N8WA 5GLSA 4GN6A 4Z0LA 5F19A 5FIWC 1PTHA 3ERIA 5JW1A 3MDLA 1HT5A 2OJVA 1PGEA 1PXXA 5HPWA 3N8VA 3NTGA 3NIUA 4M11A 4Y55A 2EHAA 3N8YA 3LN0A 3LN1A 1CX2A 3OLTA 3GCJA 4DL1C 3I6NA 2PT3A 1DNWC 3RKEA 3R4XA 4NT3A 4OTJA 3TZIA 1D7WC 1IGXA 4KSZA 3R5QA 4RRXA 3R55A 3OGWA 5B72A 3KRQA 1IGZA 1DIYA 4PH9A 3TGYA 3ZS1C 2PUMA 2IKCA 3KK6A 1DNUC 5F1AA 5COXA 4IG5A 3SXVA 3N8WB 4C1MC 3GC1A 3QMOA 3UBAA 3ERHA 3FAQA 4FM5A 4N7AA 3QH0A 1D2VC 2R5LA 3KRKA 5IKQA 4E1GA 4QJQA 6COXA 2NQXA 4RRWA 1CQEA 1Q4GA 4HHRA 1D5LC 3HS7A 4KVLA 3N8YB 1PRHA 3MQEA 2E9EA 5KIRA 2IPSA 5JVYA 2QQTA 3HS5A 4LJJA 5IKTA 4MSFA 5IKRA 4QYQA 1CVUA 4RRZA 5JVZA 3N8ZA
chains in the Genus database with same CATH topology
1HT8A 2GJMA 1FE2A 3OLUA 3R5OA 2QPKA 3FNLA 3NAKA 2AYLA 2OYEP 3S4FA 4KVKA 4RRYA 1CXPC 1DDXA 1EQHA 3Q9KA 4NJBA 2EFBA 2O86A 5IKVA 4RUTA 5FDQA 2Z5ZA 3V6QA 5FF1A 1U67A 3NT1A 5GH0A 3BXIA 3QL6A 3Q7DA 4M10A 3QF1A 3NYHA 2QRBA 4RS0A 4PNXA 3PY4A 3F9PC 4OEKA 4O1ZA 4OTYA 4COXA 3ZS0C 3RR3A 4HHSA 3HS6A 3GCLA 3N8XA 3N8FA 4KVJA 1MYPC 1EQGA 2OYUP 1EBVA 3GCKA 1MHLC 3PGHA 4GM7A 3NTBA 3N8WA 5GLSA 4GN6A 4Z0LA 5F19A 5FIWC 1PTHA 3ERIA 5JW1A 3MDLA 1HT5A 2OJVA 1PGEA 1PXXA 5HPWA 3N8VA 3NTGA 3NIUA 4M11A 4Y55A 2EHAA 3N8YA 3LN0A 3LN1A 1CX2A 3OLTA 3GCJA 4DL1C 3I6NA 2PT3A 1DNWC 3RKEA 3R4XA 4NT3A 4OTJA 3TZIA 1D7WC 1IGXA 4KSZA 3R5QA 4RRXA 3R55A 3OGWA 5B72A 3KRQA 1IGZA 1DIYA 4PH9A 3TGYA 3ZS1C 2PUMA 2IKCA 3KK6A 1DNUC 5F1AA 5COXA 4IG5A 3SXVA 3N8WB 4C1MC 3GC1A 3QMOA 3UBAA 3ERHA 3FAQA 4FM5A 4N7AA 3QH0A 1D2VC 2R5LA 3KRKA 5IKQA 4E1GA 4QJQA 6COXA 2NQXA 4RRWA 1CQEA 1Q4GA 4HHRA 1D5LC 3HS7A 4KVLA 3N8YB 1PRHA 3MQEA 2E9EA 5KIRA 2IPSA 5JVYA 2QQTA 3HS5A 4LJJA 5IKTA 4MSFA 5IKRA 4QYQA 1CVUA 4RRZA 5JVZA 3N8ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HT8 A;  2GJM A;  1FE2 A;  3OLU A;  3R5O A;  2QPK A;  3FNL A;  3NAK A;  2AYL A;  2OYE P;  3S4F A;  4KVK A;  4RRY A;  1CXP C;  1DDX A;  1EQH A;  3Q9K A;  4NJB A;  2EFB A;  2O86 A;  5IKV A;  4RUT A;  5FDQ A;  2Z5Z A;  3V6Q A;  5FF1 A;  1U67 A;  3NT1 A;  5GH0 A;  3BXI A;  3QL6 A;  3Q7D A;  4M10 A;  3QF1 A;  3NYH A;  2QRB A;  4RS0 A;  4PNX A;  3PY4 A;  3F9P C;  4OEK A;  4O1Z A;  4OTY A;  4COX A;  3ZS0 C;  3RR3 A;  4HHS A;  3HS6 A;  3GCL A;  3N8X A;  3N8F A;  4KVJ A;  1MYP C;  1EQG A;  2OYU P;  1EBV A;  3GCK A;  1MHL C;  3PGH A;  4GM7 A;  3NTB A;  3N8W A;  5GLS A;  4GN6 A;  4Z0L A;  5F19 A;  5FIW C;  1PTH A;  3ERI A;  5JW1 A;  3MDL A;  1HT5 A;  2OJV A;  1PGE A;  1PXX A;  5HPW A;  3N8V A;  3NTG A;  3NIU A;  4M11 A;  4Y55 A;  2EHA A;  3N8Y A;  3LN0 A;  3LN1 A;  1CX2 A;  3OLT A;  3GCJ A;  4DL1 C;  3I6N A;  2PT3 A;  1DNW C;  3RKE A;  3R4X A;  4NT3 A;  4OTJ A;  3TZI A;  1D7W C;  1IGX A;  4KSZ A;  3R5Q A;  4RRX A;  3R55 A;  3OGW A;  5B72 A;  3KRQ A;  1IGZ A;  1DIY A;  4PH9 A;  3TGY A;  3ZS1 C;  2PUM A;  2IKC A;  3KK6 A;  1DNU C;  5F1A A;  5COX A;  4IG5 A;  3SXV A;  3N8W B;  4C1M C;  3GC1 A;  3QMO A;  3UBA A;  3ERH A;  3FAQ A;  4FM5 A;  4N7A A;  3QH0 A;  1D2V C;  2R5L A;  3KRK A;  5IKQ A;  4E1G A;  4QJQ A;  6COX A;  2NQX A;  4RRW A;  1CQE A;  1Q4G A;  4HHR A;  1D5L C;  3HS7 A;  4KVL A;  3N8Y B;  1PRH A;  3MQE A;  2E9E A;  5KIR A;  2IPS A;  5JVY A;  2QQT A;  3HS5 A;  4LJJ A;  5IKT A;  4MSF A;  5IKR A;  4QYQ A;  1CVU A;  4RRZ A;  5JVZ A;  3N8Z A; 
#chains in the Genus database with same CATH topology
 1HT8 A;  2GJM A;  1FE2 A;  3OLU A;  3R5O A;  2QPK A;  3FNL A;  3NAK A;  2AYL A;  2OYE P;  3S4F A;  4KVK A;  4RRY A;  1CXP C;  1DDX A;  1EQH A;  3Q9K A;  4NJB A;  2EFB A;  2O86 A;  5IKV A;  4RUT A;  5FDQ A;  2Z5Z A;  3V6Q A;  5FF1 A;  1U67 A;  3NT1 A;  5GH0 A;  3BXI A;  3QL6 A;  3Q7D A;  4M10 A;  3QF1 A;  3NYH A;  2QRB A;  4RS0 A;  4PNX A;  3PY4 A;  3F9P C;  4OEK A;  4O1Z A;  4OTY A;  4COX A;  3ZS0 C;  3RR3 A;  4HHS A;  3HS6 A;  3GCL A;  3N8X A;  3N8F A;  4KVJ A;  1MYP C;  1EQG A;  2OYU P;  1EBV A;  3GCK A;  1MHL C;  3PGH A;  4GM7 A;  3NTB A;  3N8W A;  5GLS A;  4GN6 A;  4Z0L A;  5F19 A;  5FIW C;  1PTH A;  3ERI A;  5JW1 A;  3MDL A;  1HT5 A;  2OJV A;  1PGE A;  1PXX A;  5HPW A;  3N8V A;  3NTG A;  3NIU A;  4M11 A;  4Y55 A;  2EHA A;  3N8Y A;  3LN0 A;  3LN1 A;  1CX2 A;  3OLT A;  3GCJ A;  4DL1 C;  3I6N A;  2PT3 A;  1DNW C;  3RKE A;  3R4X A;  4NT3 A;  4OTJ A;  3TZI A;  1D7W C;  1IGX A;  4KSZ A;  3R5Q A;  4RRX A;  3R55 A;  3OGW A;  5B72 A;  3KRQ A;  1IGZ A;  1DIY A;  4PH9 A;  3TGY A;  3ZS1 C;  2PUM A;  2IKC A;  3KK6 A;  1DNU C;  5F1A A;  5COX A;  4IG5 A;  3SXV A;  3N8W B;  4C1M C;  3GC1 A;  3QMO A;  3UBA A;  3ERH A;  3FAQ A;  4FM5 A;  4N7A A;  3QH0 A;  1D2V C;  2R5L A;  3KRK A;  5IKQ A;  4E1G A;  4QJQ A;  6COX A;  2NQX A;  4RRW A;  1CQE A;  1Q4G A;  4HHR A;  1D5L C;  3HS7 A;  4KVL A;  3N8Y B;  1PRH A;  3MQE A;  2E9E A;  5KIR A;  2IPS A;  5JVY A;  2QQT A;  3HS5 A;  4LJJ A;  5IKT A;  4MSF A;  5IKR A;  4QYQ A;  1CVU A;  4RRZ A;  5JVZ A;  3N8Z A; 
#chains in the Genus database with same CATH homology
 1HT8 A;  2GJM A;  1FE2 A;  3OLU A;  3R5O A;  2QPK A;  3FNL A;  3NAK A;  2AYL A;  2OYE P;  3S4F A;  4KVK A;  4RRY A;  1CXP C;  1DDX A;  1EQH A;  3Q9K A;  4NJB A;  2EFB A;  2O86 A;  5IKV A;  4RUT A;  5FDQ A;  2Z5Z A;  3V6Q A;  5FF1 A;  1U67 A;  3NT1 A;  5GH0 A;  3BXI A;  3QL6 A;  3Q7D A;  4M10 A;  3QF1 A;  3NYH A;  2QRB A;  4RS0 A;  4PNX A;  3PY4 A;  3F9P C;  4OEK A;  4O1Z A;  4OTY A;  4COX A;  3ZS0 C;  3RR3 A;  4HHS A;  3HS6 A;  3GCL A;  3N8X A;  3N8F A;  4KVJ A;  1MYP C;  1EQG A;  2OYU P;  1EBV A;  3GCK A;  1MHL C;  3PGH A;  4GM7 A;  3NTB A;  3N8W A;  5GLS A;  4GN6 A;  4Z0L A;  5F19 A;  5FIW C;  1PTH A;  3ERI A;  5JW1 A;  3MDL A;  1HT5 A;  2OJV A;  1PGE A;  1PXX A;  5HPW A;  3N8V A;  3NTG A;  3NIU A;  4M11 A;  4Y55 A;  2EHA A;  3N8Y A;  3LN0 A;  3LN1 A;  1CX2 A;  3OLT A;  3GCJ A;  4DL1 C;  3I6N A;  2PT3 A;  1DNW C;  3RKE A;  3R4X A;  4NT3 A;  4OTJ A;  3TZI A;  1D7W C;  1IGX A;  4KSZ A;  3R5Q A;  4RRX A;  3R55 A;  3OGW A;  5B72 A;  3KRQ A;  1IGZ A;  1DIY A;  4PH9 A;  3TGY A;  3ZS1 C;  2PUM A;  2IKC A;  3KK6 A;  1DNU C;  5F1A A;  5COX A;  4IG5 A;  3SXV A;  3N8W B;  4C1M C;  3GC1 A;  3QMO A;  3UBA A;  3ERH A;  3FAQ A;  4FM5 A;  4N7A A;  3QH0 A;  1D2V C;  2R5L A;  3KRK A;  5IKQ A;  4E1G A;  4QJQ A;  6COX A;  2NQX A;  4RRW A;  1CQE A;  1Q4G A;  4HHR A;  1D5L C;  3HS7 A;  4KVL A;  3N8Y B;  1PRH A;  3MQE A;  2E9E A;  5KIR A;  2IPS A;  5JVY A;  2QQT A;  3HS5 A;  4LJJ A;  5IKT A;  4MSF A;  5IKR A;  4QYQ A;  1CVU A;  4RRZ A;  5JVZ A;  3N8Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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