3EXWA

Crystal structure of the human adenovirus type 7 fiber knob
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
198
structure length
198
Chain Sequence
DDNINTLWTGVNPTTANCQIMASSESNDCKLILTLVKTGALVTAFVYVIGVSNDFNMLTTHKNINFTAELFFDSTGNLLTSLSSLKTPLNHKSGQNMATGALTNAKGFMPSTTAYPFNVNSREKENYIYGTCYYTASDHTAFPIDISVMLNQRALNNETSYCIRVTWSWNTGVAPEVQTSATTLVTSPFTFYYIREDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords L5 fiber protein
publication title An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46
pubmed doi rcsb
source organism Human adenovirus 7
total genus 50
structure length 198
sequence length 198
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 3exwA00
3F0YA 1P69A 2W9LC 3L89A 4ATZA 2QLKA 1H7ZA 2BZUA 1QIUA 2O39A 4ZDGA 2J12A 1UXAA 3CNCA 1UXBA 3QNDA 2BZVA 2WBWA 4XQBA 3L88A 4K6UA 1UXEA 1NOBA 2WBVA 3N0IA 4K6TA 4LIYA 1KACA 2J2JA 4WYJA 3BQ4A 4XL8A 3EXWA 4XQAA 4K6VA 1KNBA 2WGTA 3O8EA 2WGUA 1P6AA 1QHVA 2J1KC 3EXVA 4K6WA 2WSTA
chains in the Genus database with same CATH superfamily
2BSFA 2OJ6A 3ZPFA 3F0YA 2VTWA 4D62A 1P69A 2W9LC 3L89A 2IUNA 4ATZA 2QLKA 1H7ZA 2BZUA 4GU3A 1QIUA 4ODBA 4CW8A 2O39A 4ZDGA 2J12A 3S6XA 1UXAA 2JJLA 3CNCA 1UXBA 3QNDA 2BZVA 2WBWA 2VRSA 4XQBA 2BT7A 3L88A 2IUMA 4K6UA 1UXEA 1NOBA 2WBVA 3N0IA 4K6TA 4LIYA 1KACA 2J2JA 4XC5A 4D63A 4WYJA 3BQ4A 3EOYA 2OJ5A 1KKEA 4XL8A 3ZPEA 3EXWA 4XQAA 4K6VA 1KNBA 4GU4A 2WGTA 3O8EA 2WGUA 1P6AA 5MHSA 1QHVA 2J1KC 2BT8A 3EXVA 4K6WA 2WSTA
chains in the Genus database with same CATH topology
3F0YA 1P69A 2W9LC 3L89A 4ATZA 2QLKA 1H7ZA 2BZUA 1QIUA 2O39A 4ZDGA 2J12A 1UXAA 3CNCA 1UXBA 3QNDA 2BZVA 2WBWA 4XQBA 3L88A 4K6UA 1UXEA 1NOBA 2WBVA 3N0IA 4K6TA 4LIYA 1KACA 2J2JA 4WYJA 3BQ4A 4XL8A 3EXWA 4XQAA 4K6VA 1KNBA 2WGTA 3O8EA 2WGUA 1P6AA 1QHVA 2J1KC 3EXVA 4K6WA 2WSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F0Y A;  1P69 A;  2W9L C;  3L89 A;  4ATZ A;  2QLK A;  1H7Z A;  2BZU A;  1QIU A;  2O39 A;  4ZDG A;  2J12 A;  1UXA A;  3CNC A;  1UXB A;  3QND A;  2BZV A;  2WBW A;  4XQB A;  3L88 A;  4K6U A;  1UXE A;  1NOB A;  2WBV A;  3N0I A;  4K6T A;  4LIY A;  1KAC A;  2J2J A;  4WYJ A;  3BQ4 A;  4XL8 A;  3EXW A;  4XQA A;  4K6V A;  1KNB A;  2WGT A;  3O8E A;  2WGU A;  1P6A A;  1QHV A;  2J1K C;  3EXV A;  4K6W A;  2WST A; 
#chains in the Genus database with same CATH topology
 2BSF A;  2OJ6 A;  3ZPF A;  3F0Y A;  2VTW A;  4D62 A;  1P69 A;  2W9L C;  3L89 A;  2IUN A;  4ATZ A;  2QLK A;  1H7Z A;  2BZU A;  4GU3 A;  1QIU A;  4ODB A;  4CW8 A;  2O39 A;  4ZDG A;  2J12 A;  3S6X A;  1UXA A;  2JJL A;  3CNC A;  1UXB A;  3QND A;  2BZV A;  2WBW A;  2VRS A;  4XQB A;  2BT7 A;  3L88 A;  2IUM A;  4K6U A;  1UXE A;  1NOB A;  2WBV A;  3N0I A;  4K6T A;  4LIY A;  1KAC A;  2J2J A;  4XC5 A;  4D63 A;  4WYJ A;  3BQ4 A;  3EOY A;  2OJ5 A;  1KKE A;  4XL8 A;  3ZPE A;  3EXW A;  4XQA A;  4K6V A;  1KNB A;  4GU4 A;  2WGT A;  3O8E A;  2WGU A;  1P6A A;  5MHS A;  1QHV A;  2J1K C;  2BT8 A;  3EXV A;  4K6W A;  2WST A; 
#chains in the Genus database with same CATH homology
 3F0Y A;  1P69 A;  2W9L C;  3L89 A;  4ATZ A;  2QLK A;  1H7Z A;  2BZU A;  1QIU A;  2O39 A;  4ZDG A;  2J12 A;  1UXA A;  3CNC A;  1UXB A;  3QND A;  2BZV A;  2WBW A;  4XQB A;  3L88 A;  4K6U A;  1UXE A;  1NOB A;  2WBV A;  3N0I A;  4K6T A;  4LIY A;  1KAC A;  2J2J A;  4WYJ A;  3BQ4 A;  4XL8 A;  3EXW A;  4XQA A;  4K6V A;  1KNB A;  2WGT A;  3O8E A;  2WGU A;  1P6A A;  1QHV A;  2J1K C;  3EXV A;  4K6W A;  2WST A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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