3F1JA

Crystal structure of the borna disease virus matrix protein (bdv-m) reveals rna binding properties
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
140
structure length
140
Chain Sequence
SKHSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKHAINAAFNVFSYRLRNIGVGPLGPDIRSSGP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Viral protein
molecule keywords Matrix protein
publication title Crystal structure of the Borna disease virus matrix protein (BDV-M) reveals ssRNA binding properties
pubmed doi rcsb
source organism Borna disease virus
total genus 27
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2008-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16520 BDV_M ssRNA-binding matrix protein of Bornaviridae
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.40 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 3f1jA00
4HIWA 4HIYA 4HITA 4HIUA 4HI6A 3F1JA 4HI5A
chains in the Genus database with same CATH superfamily
2GAIA 4D4TA 1CY1A 5B0VA 4RULA 2YKDA 4HITA 2O59A 4G1LA 4LD8A 4CHTA 1CY8A 1MW9X 1CY2A 1CY0A 4LP7A 2VQPA 1MW8X 3PX7A 1CY7A 4HIYA 4V23A 2O5CA 4CGYA 4HIUA 1CYYA 4HI5A 1I7DA 3PWTA 4HIWA 4LDDA 1ECLA 4LDMA 1H2CA 5D5HA 1D6MA 1CY9A 4G1OA 4G1GA 1H2DA 1CY4A 2O54A 2O19A 2O5EA 3TCQA 4LDBA 3F1JA 4HI6A 2GAJA 1ES6A 1CY6A
chains in the Genus database with same CATH topology
4D4TA 5B0VA 2YKDA 4HITA 4G1LA 4LD8A 4LP7A 2VQPA 4HIYA 4V23A 4HIUA 4HI5A 4HIWA 4LDDA 4LDMA 1H2DA 4G1OA 4G1GA 3TCQA 4LDBA 3F1JA 4HI6A 1H2CA 1ES6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HIW A;  4HIY A;  4HIT A;  4HIU A;  4HI6 A;  3F1J A;  4HI5 A; 
#chains in the Genus database with same CATH topology
 2GAI A;  4D4T A;  1CY1 A;  5B0V A;  4RUL A;  2YKD A;  4HIT A;  2O59 A;  4G1L A;  4LD8 A;  4CHT A;  1CY8 A;  1MW9 X;  1CY2 A;  1CY0 A;  4LP7 A;  2VQP A;  1MW8 X;  3PX7 A;  1CY7 A;  4HIY A;  4V23 A;  2O5C A;  4CGY A;  4HIU A;  1CYY A;  4HI5 A;  1I7D A;  3PWT A;  4HIW A;  4LDD A;  1ECL A;  4LDM A;  1H2C A;  5D5H A;  1D6M A;  1CY9 A;  4G1O A;  4G1G A;  1H2D A;  1CY4 A;  2O54 A;  2O19 A;  2O5E A;  3TCQ A;  4LDB A;  3F1J A;  4HI6 A;  2GAJ A;  1ES6 A;  1CY6 A; 
#chains in the Genus database with same CATH homology
 4D4T A;  5B0V A;  2YKD A;  4HIT A;  4G1L A;  4LD8 A;  4LP7 A;  2VQP A;  4HIY A;  4V23 A;  4HIU A;  4HI5 A;  4HIW A;  4LDD A;  4LDM A;  1H2D A;  4G1O A;  4G1G A;  3TCQ A;  4LDB A;  3F1J A;  4HI6 A;  1H2C A;  1ES6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...