3F1VA

E. coli beta sliding clamp, 148-153 ala mutant
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
366
structure length
366
Chain Sequence
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA polymerase III subunit beta
publication title Sliding clamp-DNA interactions are required for viability and contribute to DNA polymerase management in Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 87
structure length 366
sequence length 366
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2008-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3f1vA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3f1vA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3f1vA01
4N98A 4K3LA 3Q4KA 4N95A 1MMIA 1VPKA 4OVHA 4RKIA 4TSZA 5AGVA 4K74A 4OVGA 1JQJA 4OVFA 3BEPA 4N94A 4K3PA 4N9AA 3QSBA 5AH2A 4TR6A 4K3KA 3D1GA 4N96A 4K3SA 3F1VA 1OK7A 3L0XA 3Q4JA 1UNNA 4S3IA 1JQLA 3T0PA 3QSBB 4MJPA 4PNVA 5AH4A 2XURA 2AWAA 3D1FA 4N99A 4K3RA 4K3QA 4N97A 5FRQA 3RB9A 2POLA 3L10A 5AGUA 2AVTA 4PNWA 3PGEB 3D1EA 4K3OA 4K3MA 3PWEA 3L0WA 4TR8A 4MJRA 4MJQA 4TRTA 3Q4LA 4TR7A 3P16A 4PNUA 5FVEA
chains in the Genus database with same CATH superfamily
4N98A 4K3LA 3Q4KA 4N95A 1MMIA 1VPKA 3L10B 4OVHA 4RKIA 4TSZA 4K74A 5AGVA 4OVGA 1JQJA 3L0WB 4OVFA 3BEPA 4N94A 4K3PA 4N9AA 3QSBA 5AH2A 4TR6A 4K3KA 3D1GA 4N96A 4K3SA 3F1VA 1OK7A 3PGEA 3L0XA 3Q4JA 1UNNA 4S3IA 1JQLA 3T0PA 3QSBB 4MJPA 4PNVA 5AH4A 2XURA 2AWAA 3D1FA 4N99A 4K3RA 4K3QA 4N97A 5FRQA 3RB9A 2POLA 3L10A 5AGUA 2AVTA 4PNWA 3PGEB 3D1EA 4K3OA 4K3MA 3L0XB 3PWEA 3L0WA 4TR8A 4MJRA 4MJQA 4TRTA 3Q4LA 4TR7A 3P16A 4PNUA 5FVEA
chains in the Genus database with same CATH topology
4N98A 4K3LA 3Q4KA 4N95A 1MMIA 1VPKA 4OVHA 4RKIA 4TSZA 5AGVA 4K74A 4OVGA 1JQJA 4OVFA 3BEPA 4N94A 4K3PA 4N9AA 3QSBA 5AH2A 4TR6A 4K3KA 3D1GA 4N96A 4K3SA 3F1VA 1OK7A 3L0XA 3Q4JA 1UNNA 4S3IA 1JQLA 3T0PA 3QSBB 4MJPA 4PNVA 5AH4A 2XURA 2AWAA 3D1FA 4N99A 4K3RA 4K3QA 4N97A 5FRQA 3RB9A 2POLA 3L10A 5AGUA 2AVTA 4PNWA 3PGEB 3D1EA 4K3OA 4K3MA 3PWEA 3L0WA 4TR8A 4MJRA 4MJQA 4TRTA 3Q4LA 4TR7A 3P16A 4PNUA 5FVEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N98 A;  4K3L A;  3Q4K A;  4N95 A;  1MMI A;  1VPK A;  4OVH A;  4RKI A;  4TSZ A;  5AGV A;  4K74 A;  4OVG A;  1JQJ A;  4OVF A;  3BEP A;  4N94 A;  4K3P A;  4N9A A;  3QSB A;  5AH2 A;  4TR6 A;  4K3K A;  3D1G A;  4N96 A;  4K3S A;  3F1V A;  1OK7 A;  3L0X A;  3Q4J A;  1UNN A;  4S3I A;  1JQL A;  3T0P A;  3QSB B;  4MJP A;  4PNV A;  5AH4 A;  2XUR A;  2AWA A;  3D1F A;  4N99 A;  4K3R A;  4K3Q A;  4N97 A;  5FRQ A;  3RB9 A;  2POL A;  3L10 A;  5AGU A;  2AVT A;  4PNW A;  3PGE B;  3D1E A;  4K3O A;  4K3M A;  3PWE A;  3L0W A;  4TR8 A;  4MJR A;  4MJQ A;  4TRT A;  3Q4L A;  4TR7 A;  3P16 A;  4PNU A;  5FVE A; 
#chains in the Genus database with same CATH topology
 4N98 A;  4K3L A;  3Q4K A;  4N95 A;  1MMI A;  1VPK A;  3L10 B;  4OVH A;  4RKI A;  4TSZ A;  4K74 A;  5AGV A;  4OVG A;  1JQJ A;  3L0W B;  4OVF A;  3BEP A;  4N94 A;  4K3P A;  4N9A A;  3QSB A;  5AH2 A;  4TR6 A;  4K3K A;  3D1G A;  4N96 A;  4K3S A;  3F1V A;  1OK7 A;  3PGE A;  3L0X A;  3Q4J A;  1UNN A;  4S3I A;  1JQL A;  3T0P A;  3QSB B;  4MJP A;  4PNV A;  5AH4 A;  2XUR A;  2AWA A;  3D1F A;  4N99 A;  4K3R A;  4K3Q A;  4N97 A;  5FRQ A;  3RB9 A;  2POL A;  3L10 A;  5AGU A;  2AVT A;  4PNW A;  3PGE B;  3D1E A;  4K3O A;  4K3M A;  3L0X B;  3PWE A;  3L0W A;  4TR8 A;  4MJR A;  4MJQ A;  4TRT A;  3Q4L A;  4TR7 A;  3P16 A;  4PNU A;  5FVE A; 
#chains in the Genus database with same CATH homology
 4N98 A;  4K3L A;  3Q4K A;  4N95 A;  1MMI A;  1VPK A;  4OVH A;  4RKI A;  4TSZ A;  5AGV A;  4K74 A;  4OVG A;  1JQJ A;  4OVF A;  3BEP A;  4N94 A;  4K3P A;  4N9A A;  3QSB A;  5AH2 A;  4TR6 A;  4K3K A;  3D1G A;  4N96 A;  4K3S A;  3F1V A;  1OK7 A;  3L0X A;  3Q4J A;  1UNN A;  4S3I A;  1JQL A;  3T0P A;  3QSB B;  4MJP A;  4PNV A;  5AH4 A;  2XUR A;  2AWA A;  3D1F A;  4N99 A;  4K3R A;  4K3Q A;  4N97 A;  5FRQ A;  3RB9 A;  2POL A;  3L10 A;  5AGU A;  2AVT A;  4PNW A;  3PGE B;  3D1E A;  4K3O A;  4K3M A;  3PWE A;  3L0W A;  4TR8 A;  4MJR A;  4MJQ A;  4TRT A;  3Q4L A;  4TR7 A;  3P16 A;  4PNU A;  5FVE A; 
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