3F6KA

Crystal structure of the vps10p domain of human sortilin/nts3 in complex with neurotensin
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
662
structure length
657
Chain Sequence
RVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSMCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKCTSNFLSPEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Sortilin
publication title Ligands bind to Sortilin in the tunnel of a ten-bladed beta-propeller domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 156
structure length 657
sequence length 662
ec nomenclature
pdb deposition date 2008-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15901 Sortilin_C Sortilin, neurotensin receptor 3, C-terminal
A PF15902 Sortilin-Vps10 Sortilin, neurotensin receptor 3,
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.80 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 3f6kA02
2.10.70.90 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 3f6kA03
3WSYA 4PO7A 4N7EA 3WSXA 3F6KA 4MSLA
chains in the Genus database with same CATH superfamily
1TPGA 4AYMA 3MQLA 2ERJA 3KZJA 4KKDA 1OJWA 1ELVA 1E88A 1QGBA 4AYEA 1E8BA 3ZRZA 2XQWC 2Y8RA 2W81A 4YNXA 4APLA 2IZ3A 1LY2A 1H04P 3M7PA 3R62A 2XWBF 4J38B 3T5OA 2ZYCA 1QUBA 1UOTP 1E5GA 3KXVA 4DJZA 3ZLEA 1SS2A 4IGDA 1H03P 2RLPA 3GXEA 2JGXA 5FO8C 1HCCA 4BWCA 2MCZA 2WIIC 4PO7A 2UWNA 1SRZA 2Y8TA 2XRBA 5DN4A 4C16A 1OK3A 4F4OC 3WSXA 3IU3I 2CG7A 2IZ4A 4B2SA 1O9AA 3O8EB 1H2QP 3TVJA 1GPZA 2V8EA 1G4FA 3SW0X 1OJVA 1HFHA 1FBRA 2YBYA 2RLQA 3CI0J 5HYPA 1GKGA 2KMSA 5HYUB 4PZ5A 1ZJKA 2JRAA 3INBC 3FGRA 3WSYA 1OK2A 3FGTA 2KRIA 2YRAA 3ZD2A 2CG6A 1VVCA 1MD8A 4MSLA 2O39C 3OXUD 3K3TA 2RL0A 2A55A 4A5WB 2G7IA 3L89M 5HZPB 2CKUA 4AYIA 2W80A 5HYTB 1MD7A 1C1ZA 3OEDC 4WJG2 1RLHA 3ZD1A 5JPMG 2RKYA 2EC3A 3RJ3D 1QO6A 1GHQB 2B5ID 4MUCA 3OP8A 1NWVA 2XWJI 2JGWA 3VWOA 3EJHA 4CSYA 2MCYA 5DN5A 2X2ZA 1HFIA 1TPNA 3F6KA 4K12A 4LOSA 1U5MA 5I0QB 3ZLDA 3NFPI 4B2RA 2RKZA 1TPMA 4JHSA 1Z92B 4ZH1D 4YIZA 1PPQA 2Y8SA 3NJAA 1GKNA 4FXGG 1VVDA 1G4GA 2LOJA 3ERBA 1H2PP 3IX0A 2QY0A 3GOVA 3CALA 1OJYA 2XRDA 2I2LA 1Q3XA 4LOTA 2EHFA 4N7EA 4AYDA 2BZMA 1OK1A 4ONTD 1CKLA 1OK9A
chains in the Genus database with same CATH topology
3FGRA 3WSYA 3FGTA 4PO7A 2X2ZA 3F6KA 2Y8TA 4MSLA 3ZLDA 2Y8RA 3WSXA 4APLA 4YIZA 3NJAA 2Y8SA 3ZLEA 2I2LA 4N7EA 4BWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSY A;  4PO7 A;  4N7E A;  3WSX A;  3F6K A;  4MSL A; 
#chains in the Genus database with same CATH topology
 1TPG A;  4AYM A;  3MQL A;  2ERJ A;  3KZJ A;  4KKD A;  1OJW A;  1ELV A;  1E88 A;  1QGB A;  4AYE A;  1E8B A;  3ZRZ A;  2XQW C;  2Y8R A;  2W81 A;  4YNX A;  4APL A;  2IZ3 A;  1LY2 A;  1H04 P;  3M7P A;  3R62 A;  2XWB F;  4J38 B;  3T5O A;  2ZYC A;  1QUB A;  1UOT P;  1E5G A;  3KXV A;  4DJZ A;  3ZLE A;  1SS2 A;  4IGD A;  1H03 P;  2RLP A;  3GXE A;  2JGX A;  5FO8 C;  1HCC A;  4BWC A;  2MCZ A;  2WII C;  4PO7 A;  2UWN A;  1SRZ A;  2Y8T A;  2XRB A;  5DN4 A;  4C16 A;  1OK3 A;  4F4O C;  3WSX A;  3IU3 I;  2CG7 A;  2IZ4 A;  4B2S A;  1O9A A;  3O8E B;  1H2Q P;  3TVJ A;  1GPZ A;  2V8E A;  1G4F A;  3SW0 X;  1OJV A;  1HFH A;  1FBR A;  2YBY A;  2RLQ A;  3CI0 J;  5HYP A;  1GKG A;  2KMS A;  5HYU B;  4PZ5 A;  1ZJK A;  2JRA A;  3INB C;  3FGR A;  3WSY A;  1OK2 A;  3FGT A;  2KRI A;  2YRA A;  3ZD2 A;  2CG6 A;  1VVC A;  1MD8 A;  4MSL A;  2O39 C;  3OXU D;  3K3T A;  2RL0 A;  2A55 A;  4A5W B;  2G7I A;  3L89 M;  5HZP B;  2CKU A;  4AYI A;  2W80 A;  5HYT B;  1MD7 A;  1C1Z A;  3OED C;  4WJG 2;  1RLH A;  3ZD1 A;  5JPM G;  2RKY A;  2EC3 A;  3RJ3 D;  1QO6 A;  1GHQ B;  2B5I D;  4MUC A;  3OP8 A;  1NWV A;  2XWJ I;  2JGW A;  3VWO A;  3EJH A;  4CSY A;  2MCY A;  5DN5 A;  2X2Z A;  1HFI A;  1TPN A;  3F6K A;  4K12 A;  4LOS A;  1U5M A;  5I0Q B;  3ZLD A;  3NFP I;  4B2R A;  2RKZ A;  1TPM A;  4JHS A;  1Z92 B;  4ZH1 D;  4YIZ A;  1PPQ A;  2Y8S A;  3NJA A;  1GKN A;  4FXG G;  1VVD A;  1G4G A;  2LOJ A;  3ERB A;  1H2P P;  3IX0 A;  2QY0 A;  3GOV A;  3CAL A;  1OJY A;  2XRD A;  2I2L A;  1Q3X A;  4LOT A;  2EHF A;  4N7E A;  4AYD A;  2BZM A;  1OK1 A;  4ONT D;  1CKL A;  1OK9 A; 
#chains in the Genus database with same CATH homology
 3FGR A;  3WSY A;  3FGT A;  4PO7 A;  2X2Z A;  3F6K A;  2Y8T A;  4MSL A;  3ZLD A;  2Y8R A;  3WSX A;  4APL A;  4YIZ A;  3NJA A;  2Y8S A;  3ZLE A;  2I2L A;  4N7E A;  4BWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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