3F6QB

Crystal structure of integrin-linked kinase ankyrin repeat domain in complex with pinch1 lim1 domain
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
72
structure length
72
Chain Sequence
SENLYFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/signaling protein
molecule keywords Integrin-linked protein kinase
publication title The structural basis of integrin-linked kinase-PINCH interactions.
pubmed doi rcsb
source organism Homo sapiens
total genus 12
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2008-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3f6qB00
2DARA 1CTLA 2MIUA 2L6YB 1X68A 1X6AA 4HI8B 2CORA 3IXEB 2EGQA 1RUTX 4JCJA 1V6GA 2CO8A 2L6ZC 2XQNT 2CUPA 1NYPA 2EHEA 1A7IA 1QLIA 1IMLA 2DLOA 2D8YA 2L4ZA 2XJYA 1B8TA 2XJZA 4HI9B 1X3HA 3F6QB 1WIGA 2CU8A 2CURA 1IBIA 2IYBE 2MBVA 1U5SB 2CUQA 2LZUA 1M3VA 2D8XA 1J2OA 1G47A 2LXDA 1CXXA 1WYHA 2KBXB 4KFZA 1X4LA 2JTNA 1X63A 2DJ7A 2O13A 2D8ZA 1X64A 2O10A 2YPAC 1X62A 3MMKA 2DFYC 1X61A
chains in the Genus database with same CATH superfamily
1CTLA 1X6AA 5FXWA 4HI8B 3IXEB 1NYPA 5FXZA 4EYUA 5FXXA 2D8YA 2L4ZA 1WIGA 2MBVA 5LKXA 2KBXB 3NIKA 2XUEA 2JTNA 5FP3A 2O13A 3MMKA 4EZ4A 2MIUA 5LKUA 2L6YB 4BHWA 1X68A 2EGQA 1RUTX 3NILA 5LKZA 1IMLA 5FY0A 5FYMA 2XJYA 5A1LA 2CU8A 2IYBE 3AVSA 5FY7A 3NINA 1M3VA 2D8XA 1J2OA 1G47A 1X4LA 1X63A 2DJ7A 2DFYC 5LKTA 4ASKA 2CORA 3ZLIA 2L6ZC 3ZPOA 2CUPA 1B8TA 5FY1A 4HI9B 3NIMA 1X3HA 3F6QB 3NISA 4KFZA 4EZHA 3NIJA 2O10A 2D8ZA 2YPAC 1X62A 2DARA 5FXVA 4UF0B 4UF0A 4JCJA 1V6GA 2CO8A 2XQNT 2EHEA 3AVRA 1A7IA 1QLIA 2DLOA 2XJZA 3NIHA 2CURA 1IBIA 1U5SB 2CUQA 2LZUA 2LXDA 1CXXA 1WYHA 1X64A 1X61A
chains in the Genus database with same CATH topology
1CTLA 1X6AA 5FXWA 4HI8B 3IXEB 1NYPA 5FXZA 4EYUA 5FXXA 2D8YA 2L4ZA 1WIGA 2MBVA 5LKXA 2KBXB 3NIKA 2XUEA 2JTNA 5FP3A 2O13A 3MMKA 4EZ4A 2MIUA 5LKUA 2L6YB 4BHWA 1X68A 2EGQA 1RUTX 3NILA 5LKZA 1IMLA 5FY0A 5FYMA 2XJYA 5A1LA 2CU8A 2IYBE 3AVSA 5FY7A 3NINA 1M3VA 2D8XA 1J2OA 1G47A 1X4LA 1X63A 2DJ7A 2DFYC 5LKTA 4ASKA 2CORA 3ZLIA 2L6ZC 3ZPOA 2CUPA 1B8TA 5FY1A 4HI9B 3NIMA 1X3HA 3F6QB 3NISA 4KFZA 4EZHA 3NIJA 2O10A 2D8ZA 2YPAC 1X62A 2DARA 5FXVA 4UF0B 4UF0A 4JCJA 1V6GA 2CO8A 2XQNT 2EHEA 3AVRA 1A7IA 1QLIA 2DLOA 2XJZA 3NIHA 2CURA 1IBIA 1U5SB 2CUQA 2LZUA 2LXDA 1CXXA 1WYHA 1X64A 1X61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DAR A;  1CTL A;  2MIU A;  2L6Y B;  1X68 A;  1X6A A;  4HI8 B;  2COR A;  3IXE B;  2EGQ A;  1RUT X;  4JCJ A;  1V6G A;  2CO8 A;  2L6Z C;  2XQN T;  2CUP A;  1NYP A;  2EHE A;  1A7I A;  1QLI A;  1IML A;  2DLO A;  2D8Y A;  2L4Z A;  2XJY A;  1B8T A;  2XJZ A;  4HI9 B;  1X3H A;  3F6Q B;  1WIG A;  2CU8 A;  2CUR A;  1IBI A;  2IYB E;  2MBV A;  1U5S B;  2CUQ A;  2LZU A;  1M3V A;  2D8X A;  1J2O A;  1G47 A;  2LXD A;  1CXX A;  1WYH A;  2KBX B;  4KFZ A;  1X4L A;  2JTN A;  1X63 A;  2DJ7 A;  2O13 A;  2D8Z A;  1X64 A;  2O10 A;  2YPA C;  1X62 A;  3MMK A;  2DFY C;  1X61 A; 
#chains in the Genus database with same CATH topology
 1CTL A;  1X6A A;  5FXW A;  4HI8 B;  3IXE B;  1NYP A;  5FXZ A;  4EYU A;  5FXX A;  2D8Y A;  2L4Z A;  1WIG A;  2MBV A;  5LKX A;  2KBX B;  3NIK A;  2XUE A;  2JTN A;  5FP3 A;  2O13 A;  3MMK A;  4EZ4 A;  2MIU A;  5LKU A;  2L6Y B;  4BHW A;  1X68 A;  2EGQ A;  1RUT X;  3NIL A;  5LKZ A;  1IML A;  5FY0 A;  5FYM A;  2XJY A;  5A1L A;  2CU8 A;  2IYB E;  3AVS A;  5FY7 A;  3NIN A;  1M3V A;  2D8X A;  1J2O A;  1G47 A;  1X4L A;  1X63 A;  2DJ7 A;  2DFY C;  5LKT A;  4ASK A;  2COR A;  3ZLI A;  2L6Z C;  3ZPO A;  2CUP A;  1B8T A;  5FY1 A;  4HI9 B;  3NIM A;  1X3H A;  3F6Q B;  3NIS A;  4KFZ A;  4EZH A;  3NIJ A;  2O10 A;  2D8Z A;  2YPA C;  1X62 A;  2DAR A;  5FXV A;  4UF0 B;  4UF0 A;  4JCJ A;  1V6G A;  2CO8 A;  2XQN T;  2EHE A;  3AVR A;  1A7I A;  1QLI A;  2DLO A;  2XJZ A;  3NIH A;  2CUR A;  1IBI A;  1U5S B;  2CUQ A;  2LZU A;  2LXD A;  1CXX A;  1WYH A;  1X64 A;  1X61 A; 
#chains in the Genus database with same CATH homology
 1CTL A;  1X6A A;  5FXW A;  4HI8 B;  3IXE B;  1NYP A;  5FXZ A;  4EYU A;  5FXX A;  2D8Y A;  2L4Z A;  1WIG A;  2MBV A;  5LKX A;  2KBX B;  3NIK A;  2XUE A;  2JTN A;  5FP3 A;  2O13 A;  3MMK A;  4EZ4 A;  2MIU A;  5LKU A;  2L6Y B;  4BHW A;  1X68 A;  2EGQ A;  1RUT X;  3NIL A;  5LKZ A;  1IML A;  5FY0 A;  5FYM A;  2XJY A;  5A1L A;  2CU8 A;  2IYB E;  3AVS A;  5FY7 A;  3NIN A;  1M3V A;  2D8X A;  1J2O A;  1G47 A;  1X4L A;  1X63 A;  2DJ7 A;  2DFY C;  5LKT A;  4ASK A;  2COR A;  3ZLI A;  2L6Z C;  3ZPO A;  2CUP A;  1B8T A;  5FY1 A;  4HI9 B;  3NIM A;  1X3H A;  3F6Q B;  3NIS A;  4KFZ A;  4EZH A;  3NIJ A;  2O10 A;  2D8Z A;  2YPA C;  1X62 A;  2DAR A;  5FXV A;  4UF0 B;  4UF0 A;  4JCJ A;  1V6G A;  2CO8 A;  2XQN T;  2EHE A;  3AVR A;  1A7I A;  1QLI A;  2DLO A;  2XJZ A;  3NIH A;  2CUR A;  1IBI A;  1U5S B;  2CUQ A;  2LZU A;  2LXD A;  1CXX A;  1WYH A;  1X64 A;  1X61 A; 
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