The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
161
|
sequence length |
475
|
structure length |
459
|
Chain Sequence |
RIGEVASRFGLPTRVLIEIVRTESFQRSLARVTSGKPVVLDLRELDSDLASWIATHARLVEPALRELVRTVAPDVEPRVRFRGLPHRFRRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEPSDPPIARIDLDQDFLSHFDLIAFLGVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Insights into the Architecture of the Replicative Helicase from the Structure of an Archaeal MCM Homolog.
pubmed doi rcsb |
molecule tags |
Hydrolase
|
source organism |
Methanopyrus kandleri av19
|
molecule keywords |
Predicted ATPase involved in replication control, Cdc46/Mcm
|
total genus |
161
|
structure length |
459
|
sequence length |
475
|
ec nomenclature | |
pdb deposition date | 2008-11-13 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00493 | MCM | MCM P-loop domain |
A | PF17855 | MCM_lid | MCM AAA-lid domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | ||
Alpha Beta | 2-Layer Sandwich | mini-chromosome maintenance (MCM) complex, chain A, domain 1 | mini-chromosome maintenance (MCM) complex, chain A, domain 1 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |