The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
158
|
structure length |
158
|
Chain Sequence |
EHKTYEADLFVWCQQQADGLRALSRSRRDLPDDLDLEHIAEEIEDMGRSELREATSLVRQICVRVIMAMSAPEAPDRARWRSEVVSWHNLLLDTITPGMIDRIDIGVIWRRAVSEAKAALIEINVAPQAGLSFQAPLPADHFLDEDFDYDATVARLGP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Unknown function
|
| molecule keywords |
an alpha-helical protein of unknown function (Pfam01724)
|
| publication title |
Crystal structure of an alpha-helical protein of unknown function (Pfam01724) (YP_428290.1) from RHODOSPIRILLUM RUBRUM ATCC 11170 at 1.45 A resolution
rcsb |
| source organism |
Rhodospirillum rubrum atcc 11170
|
| total genus |
56
|
| structure length |
158
|
| sequence length |
158
|
| ec nomenclature | |
| pdb deposition date | 2008-11-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01724 | DUF29 | Domain of unknown function DUF29 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Malate Synthase G; Chain: A; Domain 4 | Malate Synthase G; Chain: A; Domain 4 |
#chains in the Genus database with same CATH superfamily 3FCN A; #chains in the Genus database with same CATH topology 1P7T B; 3CUZ A; 5C9U A; 1D8C A; 5T8G A; 5CBJ A; 5CC3 A; 1Y8B A; 4EX4 A; 1P7T A; 5CAH A; 5CBI A; 5CAK A; 5DX7 A; 3CUX A; 5C9W A; 2JQX A; 3SAZ A; 5H8M A; 5ECV A; 3CV1 A; 2GQ3 A; 3CV2 A; 5H8P A; 3SB0 A; 3FCN A; 1N8W A; 5E9X A; 5CJM A; 5CC7 A; 5CC6 A; 3S9I A; 5H8U A; 5DRI A; 1N8I A; 5C7V A; 5C9X A; 5C9R A; 5CBB A; 5CCZ A; 5DRC A; 5CJN A; 3S9Z A; 5CEW A; 5CC5 A; 3SAD A; #chains in the Genus database with same CATH homology 1P7T B; 3CUZ A; 5C9U A; 1D8C A; 5T8G A; 5CBJ A; 5CC3 A; 1Y8B A; 4EX4 A; 1P7T A; 5CAH A; 5CBI A; 5CAK A; 5DX7 A; 3CUX A; 5C9W A; 2JQX A; 3SAZ A; 5H8M A; 5ECV A; 3CV1 A; 2GQ3 A; 3CV2 A; 5H8P A; 3SB0 A; 3FCN A; 1N8W A; 5E9X A; 5CJM A; 5CC7 A; 5CC6 A; 3S9I A; 5H8U A; 5DRI A; 1N8I A; 5C7V A; 5C9X A; 5C9R A; 5CBB A; 5CCZ A; 5DRC A; 5CJN A; 3S9Z A; 5CEW A; 5CC5 A; 3SAD A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
