3FERA

Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
239
structure length
234
Chain Sequence
PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin binding protein
molecule keywords Filamin-B
publication title Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.
rcsb
source organism Homo sapiens
total genus 72
structure length 234
sequence length 239
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 3ferA01
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 3ferA02
2EYIA 4EDMA 1WYPA 2K2RA 3HOCA 4Q58A 5J8EA 3REPB 5A38A 4TXIA 4EDNA 5BVRA 2D86A 1AOAA 5L0OA 2VZIB 1WYRA 4Q59A 1WJOA 1DXXA 3F7PA 3JAKM 1PXYA 3FERA 1BHDA 2QJZA 5A37A 5A36A 1WYOA 2E9KA 1H67A 3KMUB 1P5SA 2RR8A 1WYMA 5A4BA 1WYLA 1WIXA 2VZGB 2D85A 2K3SA 2WFNA 1SH6A 1QAGA 2WA6A 2D88A 3JARM 2D87A 1VKAA 2WA5A 1WYNA 4TXKA 3HORA 1BKRA 1TJTA 1V5KA 2JV9A 2EYNA 2YRNA 1PA7A 3HOPA 3JALM 3KY9A 2R8UA 3I6XA 2L3GA 1MB8A 1P2XA 1SH5A 2VZCA 2D89A 3KMWB 2DK9A 1RT8A 1AA2A 2VZDA 3CO1A 2EE7A 4Q57B 4B7LA 2R0OA 4EDLA 1WYQA 2QJXA 2WA7A 1UEGA 1UJOA 1WKUA
chains in the Genus database with same CATH superfamily
2EYIA 3EAYA 4EDMA 2HL8A 1WYPA 2K2RA 3HOCA 4Q58A 5J8EA 2HKPA 3REPB 2VE7A 5A38A 4TXIA 4EDNA 5BVRA 2VE7C 2D86A 1AOAA 5L0OA 2VZIB 1WYRA 4Q59A 1WJOA 1DXXA 3F7PA 3JAKM 1PXYA 3FERA 1BHDA 2QJZA 2WDTA 5A37A 5A36A 2EQOA 1WYOA 2E9KA 1H67A 3KMUB 1P5SA 2RR8A 1WYMA 5A4BA 5FMUA 1WYLA 1WIXA 2VZGB 2D85A 2K3SA 2WFNA 2WE6A 1SH6A 1QAGA 2IGPA 2WA6A 2D88A 3JARM 2D87A 4LVPA 5FMTA 1VKAA 2WA5A 1WYNA 4TXKA 3HORA 1BKRA 1TJTA 1V5KA 3VP7A 2JV9A 2EYNA 2YRNA 1PA7A 3HOPA 3JALM 3KY9A 4LVRA 2R8UA 3I6XA 2L3GA 1MB8A 1P2XA 1SH5A 2HL9A 2VZCA 2D89A 3KMWB 2DK9A 1RT8A 1AA2A 2VZDA 3CO1A 2EE7A 4Q57B 4B7LA 2R0OA 4DDPA 1EUVA 4EDLA 1WYQA 2QJXA 2WA7A 1UEGA 1UJOA 1WKUA
chains in the Genus database with same CATH topology
2EYIA 4EDMA 1WYPA 2K2RA 3HOCA 4Q58A 5J8EA 3REPB 5A38A 4TXIA 4EDNA 5BVRA 2D86A 1AOAA 5L0OA 2VZIB 1WYRA 4Q59A 1WJOA 1DXXA 3F7PA 3JAKM 1PXYA 3FERA 1BHDA 2QJZA 5A37A 5A36A 1WYOA 2E9KA 1H67A 3KMUB 1P5SA 2RR8A 1WYMA 5A4BA 1WYLA 1WIXA 2VZGB 2D85A 2K3SA 2WFNA 1SH6A 1QAGA 2WA6A 2D88A 3JARM 2D87A 1VKAA 2WA5A 1WYNA 4TXKA 3HORA 1BKRA 1TJTA 1V5KA 2JV9A 2EYNA 2YRNA 1PA7A 3HOPA 3JALM 3KY9A 2R8UA 3I6XA 2L3GA 1MB8A 1P2XA 1SH5A 2VZCA 2D89A 3KMWB 2DK9A 1RT8A 1AA2A 2VZDA 3CO1A 2EE7A 4Q57B 4B7LA 2R0OA 4EDLA 1WYQA 2QJXA 2WA7A 1UEGA 1UJOA 1WKUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EYI A;  4EDM A;  1WYP A;  2K2R A;  3HOC A;  4Q58 A;  5J8E A;  3REP B;  5A38 A;  4TXI A;  4EDN A;  5BVR A;  2D86 A;  1AOA A;  5L0O A;  2VZI B;  1WYR A;  4Q59 A;  1WJO A;  1DXX A;  3F7P A;  3JAK M;  1PXY A;  3FER A;  1BHD A;  2QJZ A;  5A37 A;  5A36 A;  1WYO A;  2E9K A;  1H67 A;  3KMU B;  1P5S A;  2RR8 A;  1WYM A;  5A4B A;  1WYL A;  1WIX A;  2VZG B;  2D85 A;  2K3S A;  2WFN A;  1SH6 A;  1QAG A;  2WA6 A;  2D88 A;  3JAR M;  2D87 A;  1VKA A;  2WA5 A;  1WYN A;  4TXK A;  3HOR A;  1BKR A;  1TJT A;  1V5K A;  2JV9 A;  2EYN A;  2YRN A;  1PA7 A;  3HOP A;  3JAL M;  3KY9 A;  2R8U A;  3I6X A;  2L3G A;  1MB8 A;  1P2X A;  1SH5 A;  2VZC A;  2D89 A;  3KMW B;  2DK9 A;  1RT8 A;  1AA2 A;  2VZD A;  3CO1 A;  2EE7 A;  4Q57 B;  4B7L A;  2R0O A;  4EDL A;  1WYQ A;  2QJX A;  2WA7 A;  1UEG A;  1UJO A;  1WKU A; 
#chains in the Genus database with same CATH topology
 2EYI A;  3EAY A;  4EDM A;  2HL8 A;  1WYP A;  2K2R A;  3HOC A;  4Q58 A;  5J8E A;  2HKP A;  3REP B;  2VE7 A;  5A38 A;  4TXI A;  4EDN A;  5BVR A;  2VE7 C;  2D86 A;  1AOA A;  5L0O A;  2VZI B;  1WYR A;  4Q59 A;  1WJO A;  1DXX A;  3F7P A;  3JAK M;  1PXY A;  3FER A;  1BHD A;  2QJZ A;  2WDT A;  5A37 A;  5A36 A;  2EQO A;  1WYO A;  2E9K A;  1H67 A;  3KMU B;  1P5S A;  2RR8 A;  1WYM A;  5A4B A;  5FMU A;  1WYL A;  1WIX A;  2VZG B;  2D85 A;  2K3S A;  2WFN A;  2WE6 A;  1SH6 A;  1QAG A;  2IGP A;  2WA6 A;  2D88 A;  3JAR M;  2D87 A;  4LVP A;  5FMT A;  1VKA A;  2WA5 A;  1WYN A;  4TXK A;  3HOR A;  1BKR A;  1TJT A;  1V5K A;  3VP7 A;  2JV9 A;  2EYN A;  2YRN A;  1PA7 A;  3HOP A;  3JAL M;  3KY9 A;  4LVR A;  2R8U A;  3I6X A;  2L3G A;  1MB8 A;  1P2X A;  1SH5 A;  2HL9 A;  2VZC A;  2D89 A;  3KMW B;  2DK9 A;  1RT8 A;  1AA2 A;  2VZD A;  3CO1 A;  2EE7 A;  4Q57 B;  4B7L A;  2R0O A;  4DDP A;  1EUV A;  4EDL A;  1WYQ A;  2QJX A;  2WA7 A;  1UEG A;  1UJO A;  1WKU A; 
#chains in the Genus database with same CATH homology
 2EYI A;  4EDM A;  1WYP A;  2K2R A;  3HOC A;  4Q58 A;  5J8E A;  3REP B;  5A38 A;  4TXI A;  4EDN A;  5BVR A;  2D86 A;  1AOA A;  5L0O A;  2VZI B;  1WYR A;  4Q59 A;  1WJO A;  1DXX A;  3F7P A;  3JAK M;  1PXY A;  3FER A;  1BHD A;  2QJZ A;  5A37 A;  5A36 A;  1WYO A;  2E9K A;  1H67 A;  3KMU B;  1P5S A;  2RR8 A;  1WYM A;  5A4B A;  1WYL A;  1WIX A;  2VZG B;  2D85 A;  2K3S A;  2WFN A;  1SH6 A;  1QAG A;  2WA6 A;  2D88 A;  3JAR M;  2D87 A;  1VKA A;  2WA5 A;  1WYN A;  4TXK A;  3HOR A;  1BKR A;  1TJT A;  1V5K A;  2JV9 A;  2EYN A;  2YRN A;  1PA7 A;  3HOP A;  3JAL M;  3KY9 A;  2R8U A;  3I6X A;  2L3G A;  1MB8 A;  1P2X A;  1SH5 A;  2VZC A;  2D89 A;  3KMW B;  2DK9 A;  1RT8 A;  1AA2 A;  2VZD A;  3CO1 A;  2EE7 A;  4Q57 B;  4B7L A;  2R0O A;  4EDL A;  1WYQ A;  2QJX A;  2WA7 A;  1UEG A;  1UJO A;  1WKU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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