3FFNA

Crystal structure of calcium-free human gelsolin
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
733
structure length
728
Chain Sequence
NSMVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNWRDPDQTDGLGLSYLSSHIANVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWSVDPLDRAMAELAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Actin binding protein
molecule keywords Gelsolin
publication title Ca2+ binding by domain 2 plays a critical role in the activation and stabilization of gelsolin.
pubmed doi rcsb
source organism Homo sapiens
total genus 221
structure length 728
sequence length 733
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA04
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA06
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA05
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffnA03
5KYWA 1AK6A 2D8BA 2KVKA 3EGXA 4PKHB 2FGHA 1MDUA 3TU5B 3EH1A 3A5OS 1DEJS 5L6WC 2I2QA 4S10C 2FH4A 4LIZA 5KYUB 1TVJA 2MV2A 1D0NA 1WFSA 1P8ZG 2VACA 1SVQA 1T2LA 3EGDB 1AK7A 2LJ8A 2QTVA 4KEDA 3FFNA 1COFA 1V6FA 1YVNG 4PKIG 3EGXB 1SVRA 1M2VB 1NPHA 4Z94G 3CJCG 5KYXB 1VFQA 2L72A 3CI5G 3FG6A 1M2OA 5IVUA 2MP4A 5FAFA 1D4XG 5KYYB 1RGIG 5DD2A 2FH2A 3EFOA 2NUTA 3CIPG 1Q8XA 1QPVA 1TMWA 5A1MA 2FF3A 1UDMA 2XFAA 3FG7A 2FF6G 4CBWG 2VIKA 4CBUG 1NLVG 1CNUA 5KYWB 5HVKD 2MOTA 3EG9A 1PD0A 2FH1A 3Q2BA 1C0GS 5KYNA 1EQYS 1WNJA 3CJBG 2FH3A 2LLFA 1PCXA 5FAEA 1WM4A 4PKGG 2NUTB 1T3XA 1X67A 2W0IA 3EFOB 4KEEA 5HVKB 4CBXG 1C0FS 1PD1A 1VKKA 3A5LS 2VILA 1T3YA 2LXXA 3EH2A 1H1VG 1CFYA 2NUPA 1KCQA 3EG9B 1P8XA 1M2VA 3FFKA 1NM1G 1SVYA 1HQZ1 1T44G 3DAWB 3L50A 5KYXA 1Q8GA 1NMDG 3A5MS 4JD2H 5KYYA 1M4JA 5KYUA 1AHQA 3A5NS 2XF1A 2HD7A 1J72A 4KEFA 1YAGG 3EGDA 1F7SA 2NUPB 1JHWA 4BEX1 1ESVS
chains in the Genus database with same CATH superfamily
5KYWA 1AK6A 2D8BA 2KVKA 3EGXA 4PKHB 2FGHA 1MDUA 3TU5B 3EH1A 3A5OS 1DEJS 5L6WC 2I2QA 4S10C 2FH4A 4LIZA 5KYUB 1TVJA 2MV2A 1D0NA 1WFSA 1P8ZG 2VACA 1SVQA 1T2LA 3EGDB 1AK7A 2LJ8A 2QTVA 4KEDA 3FFNA 1COFA 1V6FA 1YVNG 4PKIG 3EGXB 1SVRA 1M2VB 1NPHA 4Z94G 3CJCG 5KYXB 1VFQA 2L72A 3CI5G 3FG6A 1M2OA 5IVUA 2MP4A 5FAFA 1D4XG 5KYYB 1RGIG 5DD2A 2FH2A 3EFOA 2NUTA 3CIPG 1Q8XA 1QPVA 1TMWA 5A1MA 2FF3A 1UDMA 2XFAA 3FG7A 2FF6G 4CBWG 2VIKA 4CBUG 1NLVG 1CNUA 5KYWB 5HVKD 2MOTA 3EG9A 1PD0A 2FH1A 3Q2BA 1C0GS 5KYNA 1EQYS 1WNJA 3CJBG 2FH3A 2LLFA 1PCXA 5FAEA 1WM4A 4PKGG 2NUTB 1T3XA 1X67A 2W0IA 3EFOB 4KEEA 5HVKB 4CBXG 1C0FS 1PD1A 1VKKA 3A5LS 2VILA 1T3YA 2LXXA 3EH2A 1H1VG 1CFYA 2NUPA 1KCQA 3EG9B 1P8XA 1M2VA 3FFKA 1NM1G 1SVYA 1HQZ1 1T44G 3DAWB 3L50A 5KYXA 1Q8GA 1NMDG 3A5MS 4JD2H 5KYYA 1M4JA 5KYUA 1AHQA 3A5NS 2XF1A 2HD7A 1J72A 4KEFA 3DA7A 1YAGG 3EGDA 1F7SA 2NUPB 1JHWA 4BEX1 1ESVS
chains in the Genus database with same CATH topology
5KYWA 1AK6A 2D8BA 2KVKA 3EGXA 4PKHB 2FGHA 1MDUA 3TU5B 3EH1A 3A5OS 1DEJS 5L6WC 2I2QA 4S10C 2FH4A 4LIZA 5KYUB 1TVJA 2MV2A 1D0NA 1WFSA 1P8ZG 2VACA 1SVQA 1T2LA 3EGDB 1AK7A 2LJ8A 2QTVA 4KEDA 3FFNA 1COFA 1V6FA 1YVNG 4PKIG 3EGXB 1SVRA 1M2VB 1NPHA 4Z94G 3CJCG 5KYXB 1VFQA 2L72A 3CI5G 3FG6A 1M2OA 5IVUA 2MP4A 5FAFA 1D4XG 5KYYB 1RGIG 5DD2A 2FH2A 3EFOA 2NUTA 3CIPG 1Q8XA 1QPVA 1TMWA 5A1MA 2FF3A 1UDMA 2XFAA 3FG7A 2FF6G 4CBWG 2VIKA 4CBUG 1NLVG 1CNUA 5KYWB 5HVKD 2MOTA 3EG9A 1PD0A 2FH1A 3Q2BA 1C0GS 5KYNA 1EQYS 1WNJA 3CJBG 2FH3A 2LLFA 1PCXA 5FAEA 1WM4A 4PKGG 2NUTB 1T3XA 1X67A 2W0IA 3EFOB 4KEEA 5HVKB 4CBXG 1C0FS 1PD1A 1VKKA 3A5LS 2VILA 1T3YA 2LXXA 3EH2A 1H1VG 1CFYA 2NUPA 1KCQA 3EG9B 1P8XA 1M2VA 3FFKA 1NM1G 1SVYA 1HQZ1 1T44G 3DAWB 3L50A 5KYXA 1Q8GA 1NMDG 3A5MS 4JD2H 5KYYA 1M4JA 5KYUA 1AHQA 3A5NS 2XF1A 2HD7A 1J72A 4KEFA 3DA7A 1YAGG 3EGDA 1F7SA 2NUPB 1JHWA 4BEX1 1ESVS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KYW A;  1AK6 A;  2D8B A;  2KVK A;  3EGX A;  4PKH B;  2FGH A;  1MDU A;  3TU5 B;  3EH1 A;  3A5O S;  1DEJ S;  5L6W C;  2I2Q A;  4S10 C;  2FH4 A;  4LIZ A;  5KYU B;  1TVJ A;  2MV2 A;  1D0N A;  1WFS A;  1P8Z G;  2VAC A;  1SVQ A;  1T2L A;  3EGD B;  1AK7 A;  2LJ8 A;  2QTV A;  4KED A;  3FFN A;  1COF A;  1V6F A;  1YVN G;  4PKI G;  3EGX B;  1SVR A;  1M2V B;  1NPH A;  4Z94 G;  3CJC G;  5KYX B;  1VFQ A;  2L72 A;  3CI5 G;  3FG6 A;  1M2O A;  5IVU A;  2MP4 A;  5FAF A;  1D4X G;  5KYY B;  1RGI G;  5DD2 A;  2FH2 A;  3EFO A;  2NUT A;  3CIP G;  1Q8X A;  1QPV A;  1TMW A;  5A1M A;  2FF3 A;  1UDM A;  2XFA A;  3FG7 A;  2FF6 G;  4CBW G;  2VIK A;  4CBU G;  1NLV G;  1CNU A;  5KYW B;  5HVK D;  2MOT A;  3EG9 A;  1PD0 A;  2FH1 A;  3Q2B A;  1C0G S;  5KYN A;  1EQY S;  1WNJ A;  3CJB G;  2FH3 A;  2LLF A;  1PCX A;  5FAE A;  1WM4 A;  4PKG G;  2NUT B;  1T3X A;  1X67 A;  2W0I A;  3EFO B;  4KEE A;  5HVK B;  4CBX G;  1C0F S;  1PD1 A;  1VKK A;  3A5L S;  2VIL A;  1T3Y A;  2LXX A;  3EH2 A;  1H1V G;  1CFY A;  2NUP A;  1KCQ A;  3EG9 B;  1P8X A;  1M2V A;  3FFK A;  1NM1 G;  1SVY A;  1HQZ 1;  1T44 G;  3DAW B;  3L50 A;  5KYX A;  1Q8G A;  1NMD G;  3A5M S;  4JD2 H;  5KYY A;  1M4J A;  5KYU A;  1AHQ A;  3A5N S;  2XF1 A;  2HD7 A;  1J72 A;  4KEF A;  1YAG G;  3EGD A;  1F7S A;  2NUP B;  1JHW A;  4BEX 1;  1ESV S; 
#chains in the Genus database with same CATH topology
 5KYW A;  1AK6 A;  2D8B A;  2KVK A;  3EGX A;  4PKH B;  2FGH A;  1MDU A;  3TU5 B;  3EH1 A;  3A5O S;  1DEJ S;  5L6W C;  2I2Q A;  4S10 C;  2FH4 A;  4LIZ A;  5KYU B;  1TVJ A;  2MV2 A;  1D0N A;  1WFS A;  1P8Z G;  2VAC A;  1SVQ A;  1T2L A;  3EGD B;  1AK7 A;  2LJ8 A;  2QTV A;  4KED A;  3FFN A;  1COF A;  1V6F A;  1YVN G;  4PKI G;  3EGX B;  1SVR A;  1M2V B;  1NPH A;  4Z94 G;  3CJC G;  5KYX B;  1VFQ A;  2L72 A;  3CI5 G;  3FG6 A;  1M2O A;  5IVU A;  2MP4 A;  5FAF A;  1D4X G;  5KYY B;  1RGI G;  5DD2 A;  2FH2 A;  3EFO A;  2NUT A;  3CIP G;  1Q8X A;  1QPV A;  1TMW A;  5A1M A;  2FF3 A;  1UDM A;  2XFA A;  3FG7 A;  2FF6 G;  4CBW G;  2VIK A;  4CBU G;  1NLV G;  1CNU A;  5KYW B;  5HVK D;  2MOT A;  3EG9 A;  1PD0 A;  2FH1 A;  3Q2B A;  1C0G S;  5KYN A;  1EQY S;  1WNJ A;  3CJB G;  2FH3 A;  2LLF A;  1PCX A;  5FAE A;  1WM4 A;  4PKG G;  2NUT B;  1T3X A;  1X67 A;  2W0I A;  3EFO B;  4KEE A;  5HVK B;  4CBX G;  1C0F S;  1PD1 A;  1VKK A;  3A5L S;  2VIL A;  1T3Y A;  2LXX A;  3EH2 A;  1H1V G;  1CFY A;  2NUP A;  1KCQ A;  3EG9 B;  1P8X A;  1M2V A;  3FFK A;  1NM1 G;  1SVY A;  1HQZ 1;  1T44 G;  3DAW B;  3L50 A;  5KYX A;  1Q8G A;  1NMD G;  3A5M S;  4JD2 H;  5KYY A;  1M4J A;  5KYU A;  1AHQ A;  3A5N S;  2XF1 A;  2HD7 A;  1J72 A;  4KEF A;  3DA7 A;  1YAG G;  3EGD A;  1F7S A;  2NUP B;  1JHW A;  4BEX 1;  1ESV S; 
#chains in the Genus database with same CATH homology
 5KYW A;  1AK6 A;  2D8B A;  2KVK A;  3EGX A;  4PKH B;  2FGH A;  1MDU A;  3TU5 B;  3EH1 A;  3A5O S;  1DEJ S;  5L6W C;  2I2Q A;  4S10 C;  2FH4 A;  4LIZ A;  5KYU B;  1TVJ A;  2MV2 A;  1D0N A;  1WFS A;  1P8Z G;  2VAC A;  1SVQ A;  1T2L A;  3EGD B;  1AK7 A;  2LJ8 A;  2QTV A;  4KED A;  3FFN A;  1COF A;  1V6F A;  1YVN G;  4PKI G;  3EGX B;  1SVR A;  1M2V B;  1NPH A;  4Z94 G;  3CJC G;  5KYX B;  1VFQ A;  2L72 A;  3CI5 G;  3FG6 A;  1M2O A;  5IVU A;  2MP4 A;  5FAF A;  1D4X G;  5KYY B;  1RGI G;  5DD2 A;  2FH2 A;  3EFO A;  2NUT A;  3CIP G;  1Q8X A;  1QPV A;  1TMW A;  5A1M A;  2FF3 A;  1UDM A;  2XFA A;  3FG7 A;  2FF6 G;  4CBW G;  2VIK A;  4CBU G;  1NLV G;  1CNU A;  5KYW B;  5HVK D;  2MOT A;  3EG9 A;  1PD0 A;  2FH1 A;  3Q2B A;  1C0G S;  5KYN A;  1EQY S;  1WNJ A;  3CJB G;  2FH3 A;  2LLF A;  1PCX A;  5FAE A;  1WM4 A;  4PKG G;  2NUT B;  1T3X A;  1X67 A;  2W0I A;  3EFO B;  4KEE A;  5HVK B;  4CBX G;  1C0F S;  1PD1 A;  1VKK A;  3A5L S;  2VIL A;  1T3Y A;  2LXX A;  3EH2 A;  1H1V G;  1CFY A;  2NUP A;  1KCQ A;  3EG9 B;  1P8X A;  1M2V A;  3FFK A;  1NM1 G;  1SVY A;  1HQZ 1;  1T44 G;  3DAW B;  3L50 A;  5KYX A;  1Q8G A;  1NMD G;  3A5M S;  4JD2 H;  5KYY A;  1M4J A;  5KYU A;  1AHQ A;  3A5N S;  2XF1 A;  2HD7 A;  1J72 A;  4KEF A;  3DA7 A;  1YAG G;  3EGD A;  1F7S A;  2NUP B;  1JHW A;  4BEX 1;  1ESV S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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