3FHHA

Crystal structure of the heme/hemoglobin outer membrane transporter shua from shigella dysenteriae
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
640
structure length
621
Chain Sequence
TETMTVTATGNARSSFEAPMMVSVIDTSAPENQTATSATDLLRHVPGITLDGTGRTNGQDINMRGYDHRGVLVLVDGIRQGTDTGHLNGTFLDPALIKRVEIVRGPSALLYGSGALGGVISYDTVDAKDLLQEGQSSGFRVFGTGGTGDHSLGLGASAFGRTENLDGIVAWSSRDRGDLRQSNGETAPNDESINNMLAKGTWQIDSAQSLSGLVRYYNNDAREPKNPQTVEASESSNPMVDRSTIQRDAQLSYKLAPQGNDWLNADAKIYWSEVRINAQEYREQITKGARLENRSTLFADSFASHLLTYGGEYYRQEQGSHTTGFPQAKIDFSSGWLQDEITLRDLPITLLGGTRYDSYRGSSDGYKDVDADKWSSRAGMTINPTNWLMLFGSYAQAFRAPTMGEMYNDSKHFSIGRFYTNYWVPNPNLRPETNETQEYGFGLRFDDLMLSNDALEFKASYFDTKAKDYISTTVDFAAATTMSYNVPNAKIWGWDVMTKYTTDLFSLDVAYNRTRGKDTDTGEYISSINPDTVTSTLNIPIAHSGFSVGWVGTFADRSTHISSKQPGYGVNDFYVSYQGQQALKGMTTTLVLGNAFDKEYWSPQGIPQDGRNGKIFVSYQW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Outer membrane heme receptor ShuA
publication title Structure of the heme/hemoglobin outer membrane transporter ShuA from the human pathogen /Shigella dysenteriae /bound to divalent cations: heme binding by an extracellular induced fit mechanism
rcsb
source organism Shigella dysenteriae
total genus 163
structure length 621
sequence length 640
ec nomenclature
pdb deposition date 2008-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 3fhhA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 3fhhA01
2GRXA 4EPAA 1QFFA 2W16A 3FHHA 2W75A 1NQHA 2W77A 3RGNA 2O5PA 1NQFA 1QKCA 1XKHA 3DDRA 2GSKA 3RGMA 2W78A 4CU4A 4AIPA 1NQGA 1FCPA 2HDIA 4RDRA 1BY3A 1KMOA 1FEPA 3CSNA 2GUFA 2W6UA 3CSLA 1PO0A 1UJWA 1QJQA 1XKWA 4B7OA 1PNZA 1PO3A 4AIQA 3M8DA 2YSUA 3V8XA 2FCPA 3V89A 3QLBA 1NQEA 2HDFA 2IAHA 3M8BA 2W76A 1QFGA 3EFMA 4RDTA 2W6TA 1KMPA 5FOKA 1BY5A 1FI1A
chains in the Genus database with same CATH superfamily
2GRXA 1MALA 1MPRA 1QFFA 4EPAA 2W16A 1NQHA 3FHHA 2W75A 2W77A 3RGNA 2O5PA 1NQFA 1QKCA 1XKHA 3DDRA 1MPOA 2GSKA 3RGMA 2W78A 1MPNA 4CU4A 4AIPA 1NQGA 1FCPA 2HDIA 4RDRA 1BY3A 1KMOA 1A0SP 1FEPA 3CSNA 2GUFA 2W6UA 3CSLA 1PO0A 1UJWA 1QJQA 1OH2Q 1AF6A 1XKWA 1MPMA 1A0TP 4B7OA 1PNZA 1PO3A 4AIQA 3M8DA 2YSUA 3V8XA 1JBIA 2FCPA 3V89A 3QLBA 1NQEA 2HDFA 2IAHA 3M8BA 2W76A 1QFGA 3EFMA 4RDTA 2W6TA 2MPRA 1OH2P 1KMPA 1MPQA 5FOKA 1BY5A 1FI1A
chains in the Genus database with same CATH topology
2GRXA 4EPAA 1QFFA 2W16A 3FHHA 2W75A 1NQHA 2W77A 3RGNA 2O5PA 1NQFA 1QKCA 1XKHA 3DDRA 2GSKA 3RGMA 2W78A 4CU4A 4AIPA 1NQGA 1FCPA 2HDIA 4RDRA 1BY3A 1KMOA 1FEPA 3CSNA 2GUFA 2W6UA 3CSLA 1PO0A 1UJWA 1QJQA 1XKWA 4B7OA 1PNZA 1PO3A 4AIQA 3M8DA 2YSUA 3V8XA 2FCPA 3V89A 3QLBA 1NQEA 2HDFA 2IAHA 3M8BA 2W76A 1QFGA 3EFMA 4RDTA 2W6TA 1KMPA 5FOKA 1BY5A 1FI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GRX A;  4EPA A;  1QFF A;  2W16 A;  3FHH A;  2W75 A;  1NQH A;  2W77 A;  3RGN A;  2O5P A;  1NQF A;  1QKC A;  1XKH A;  3DDR A;  2GSK A;  3RGM A;  2W78 A;  4CU4 A;  4AIP A;  1NQG A;  1FCP A;  2HDI A;  4RDR A;  1BY3 A;  1KMO A;  1FEP A;  3CSN A;  2GUF A;  2W6U A;  3CSL A;  1PO0 A;  1UJW A;  1QJQ A;  1XKW A;  4B7O A;  1PNZ A;  1PO3 A;  4AIQ A;  3M8D A;  2YSU A;  3V8X A;  2FCP A;  3V89 A;  3QLB A;  1NQE A;  2HDF A;  2IAH A;  3M8B A;  2W76 A;  1QFG A;  3EFM A;  4RDT A;  2W6T A;  1KMP A;  5FOK A;  1BY5 A;  1FI1 A; 
#chains in the Genus database with same CATH topology
 2GRX A;  1MAL A;  1MPR A;  1QFF A;  4EPA A;  2W16 A;  1NQH A;  3FHH A;  2W75 A;  2W77 A;  3RGN A;  2O5P A;  1NQF A;  1QKC A;  1XKH A;  3DDR A;  1MPO A;  2GSK A;  3RGM A;  2W78 A;  1MPN A;  4CU4 A;  4AIP A;  1NQG A;  1FCP A;  2HDI A;  4RDR A;  1BY3 A;  1KMO A;  1A0S P;  1FEP A;  3CSN A;  2GUF A;  2W6U A;  3CSL A;  1PO0 A;  1UJW A;  1QJQ A;  1OH2 Q;  1AF6 A;  1XKW A;  1MPM A;  1A0T P;  4B7O A;  1PNZ A;  1PO3 A;  4AIQ A;  3M8D A;  2YSU A;  3V8X A;  1JBI A;  2FCP A;  3V89 A;  3QLB A;  1NQE A;  2HDF A;  2IAH A;  3M8B A;  2W76 A;  1QFG A;  3EFM A;  4RDT A;  2W6T A;  2MPR A;  1OH2 P;  1KMP A;  1MPQ A;  5FOK A;  1BY5 A;  1FI1 A; 
#chains in the Genus database with same CATH homology
 2GRX A;  4EPA A;  1QFF A;  2W16 A;  3FHH A;  2W75 A;  1NQH A;  2W77 A;  3RGN A;  2O5P A;  1NQF A;  1QKC A;  1XKH A;  3DDR A;  2GSK A;  3RGM A;  2W78 A;  4CU4 A;  4AIP A;  1NQG A;  1FCP A;  2HDI A;  4RDR A;  1BY3 A;  1KMO A;  1FEP A;  3CSN A;  2GUF A;  2W6U A;  3CSL A;  1PO0 A;  1UJW A;  1QJQ A;  1XKW A;  4B7O A;  1PNZ A;  1PO3 A;  4AIQ A;  3M8D A;  2YSU A;  3V8X A;  2FCP A;  3V89 A;  3QLB A;  1NQE A;  2HDF A;  2IAH A;  3M8B A;  2W76 A;  1QFG A;  3EFM A;  4RDT A;  2W6T A;  1KMP A;  5FOK A;  1BY5 A;  1FI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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