3FKIL

12-subunit rna polymerase ii refined with zn-sad data
Total Genus 1
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
47
structure length
47
Chain Sequence
TATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Structure of the 12-Subunit RNA Polymerase II Refined with the Aid of Anomalous Diffraction Data
pubmed doi rcsb
molecule tags Transcription
total genus 1
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2008-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3fkiL00
2Y0SP 5IYBL 1TWAL 4A3KL 5IYDL 3HKZP 4C2M1 5FJ8L 2NVQL 2E2HL 5FLML 5M5YL 3S15L 3RZOL 5M3ML 3S2HL 2E2JL 4BY1L 2JA6L 4A3JL 3GTGL 3S17L 4A3BL 4A3DL 3I4ML 4A93L 3S1RL 4AYBP 1TWGL 1I6HL 3S2DL 3H0GL 3S16L 5IYCL 1WCML 4A3IL 3S14L 4A3FL 4BBSL 1Y1WL 4A3LL 1TWFL 1TWCL 2VUML 3HOUL 3GTPL 4A3ML 3FKIL 4C3JL 4A3GL 3GTKL 4A3CL 4QIWP 3PO3L 3HOYL 3HOZL 3GTOL 3S1NL 3CQZL 2JA8L 5C4XL 3PO2L 5M3FL 2JA5L 2JA7L 2E2IL 5IP9L 2NVYL 1Y1VL 2PMZP 1TWHL 5C44L 2R93L 4X6AL 4Y7NL 3GTJL 3M3YL 2YU9L 5IP7L 3HOWL 4C3IL 2B63L 2NVTL 2NVXL 2R92L 5C3EL 3H3VM 4Y52L 1I50L 3K7AL 3GTLL 3RZDL 3I4NL 3S1ML 2WB1P 5M5XL 1SFOL 4BY7L 3GTQL 2R7ZL 5C4JL 4BXXL 3M4OL 3HOXL 3GTML 1I3QL 4BBRL 3S1QL 4C3HL 1K83L 2WAQP 4A3EL 5M5WL 1R9TL 3HOVL
chains in the Genus database with same CATH superfamily
4AI2A 1R0HA 5IYDL 4RXNA 3PWFA 3S15L 1WJVA 3RZOL 2JI1A 3S2HL 3A44A 5MFZA 3GTGL 4B8CD 4AR5A 2O5JD 1TWGL 2XJSA 5MF6A 3P2AA 3H0GL 2AYJA 3HAXC 1T9QA 1TWCL 8RXNA 2KKDA 3H9BA 1P7PA 3FKIL 2JI3A 2PVXA 4QIWP 1DVBA 3PO3L 4AR6A 4AR3A 1ODHA 3GTOL 2Z3QB 1FHMA 3KYUA 1VZIA 2JA5L 3PKIA 1OWCA 3LWPB 3J7Z1 4AI3A 1R0JA 1NXEA 5K2ME 1PZXA 4G6BA 3B0AB 3M3YL 2JI2A 4C3IL 2NVXL 2R92L 1SMWA 1R0GA 3H3VM 3RYGA 4Y52L 1FHHA 3I4NL 2J9UB 4UY81 2K2DA 2C6BA 5C4JL 3LWOB 4POGA 4AHZA 3LNLA 1PFVA 3PZAA 2XJPA 3H97A 3J7Y1 1TWAL 4A3KL 3HKZP 4C2M1 2XJVA 2CKCA 3HJWB 5RXNA 5M3ML 4A3JL 4ZN1B 4GS7D 5MGNA 4A93L 1IW7D 4AYBP 3KYWA 1YK4A 2V0FA 5GAHc 2HR5A 3LWVB 1WCML 4A3IL 4A3FL 4WFN1 2A6HD 2H12A 1S24A 3QVDA 2PPTA 2CKAA 1SMMA 4V196 3RZTA 1S30A 3CQZL 3B08B 2RFKB 1NXGA 1VZGA 2R93L 5GADc 2MS3A 4X6AL 3GTJL 3MPSA 1OWBA 2YU9L 5IP7L 2DSXA 3JR7A 2B63L 1ZRPA 3PIP1 5C3EL 4AR4A 3K7AL 1R0IA 3LWQB 3H9CA 3S1ML 4AHWA 1SFOL 3GTQL 2XJUA 2LCQA 1QQTA 1YUXA 3KYXA 5AI3A 4U671 1I3QL 2ERJA 4BBRL 1SMUA 1YUZA 4ZN3B 3S1QL 3P8BA 1LKMA 4JAEA 1R9TL 4K9FA 4AHXA 2CR8A 3HOVL 1RYTA 3H99A 1B71A 1F4LA 4XGHA 2A69D 4ME3A 3ZG6A 1RDVA 3NFPI 2GMGA 5FLML 2E2JL 4BY1L 2JA6L 1BFYA 2AQCA 1LKOA 2VL6A 3S16L 2ERSA 1IU5A 5IYCL 4BBSL 2VUML 5JVH1 4A3ML 2RDVA 5JVG1 4C3JL 5IY0A 4A3GL 3GTKL 1CAAA 4A3CL 2KN9A 3LWRB 1LKPA 3KYVA 3HOZL 3S1NL 3VPBE 2JA8L 2XJRA 2V0EA 2XJTA 3RZ6A 2Z3RB 3PO2L 3HJYB 1DX8A 2JA7L 2E2IL 7RXNA 5DM71 1JYBA 1YK5A 3PKJA 5MLC3 1R0FA 1TWHL 3WWLA 4Y7NL 5DM61 1YV1A 2NYDA 4XXBB 1RWDA 3PIO1 1RYQA 1Z92B 2M4VA 3K35A 3MQKB 3GTLL 2V3BB 2WB1P 4AI0A 4BY7L 1BQ8A 1RDGA 4BXXL 4TPUA 2A68D 3HOXL 4E6YA 3GTML 2APOB 1E8JA 6RXNA 4C3HL 1BE7A 2WAQP 1BQ9A 1T9OA 2Y0SP 1LTLA 5IYBL 2PVEA 3SS2A 3LPEB 1VZHA 2AUSB 4AHYA 5FJ8L 2NVQL 2E2HL 4JAFA 5M5YL 4A3BL 3S17L 4A3DL 3I4ML 3S1RL 2A6ED 1I6HL 3S2DL 3IU3I 4YWMA 5AN9H 2PSMC 3MSUA 1S2ZA 3S14L 1B2JA 5MFPA 1T9PA 1Y1WL 4A3LL 1TWFL 1PFYA 3HOUL 3GTPL 5H1Sc 2L0ZA 2M6PA 3FDJA 2XJQA 4LHLA 1IROA 2PYAA 3HOYL 1BRFA 1CADA 2BE5D 1C09A 2B5ID 1QCVA 1VCXA 1QYBA 1B2OA 5C4XL 3WWNB 2QL0A 5M3FL 2EY4E 1IU6A 5IP9L 2NVYL 2ZIXA 1Y1VL 2HVYC 1IRNA 2PMZP 5GAEc 5C44L 5EIOC 1NNQA 2C6AA 4JADA 3PL5A 3HOWL 4LHNA 2NVTL 4AI1A 3QQCE 1I50L 3RZDL 5M5XL 2R7ZL 4JAGA 3M4OL 5GAGc 4YWLA 4POFA 1PFWA 4TVMA 1K83L 5AI2A 4A3EL 5EINC 5M5WL 3KYYA 1RB9A 2M4YA 1PFUA 1B13A 2M6OA 1H7VA
chains in the Genus database with same CATH topology
2Y0SP 5IYBL 1TWAL 4A3KL 5IYDL 3HKZP 4C2M1 5FJ8L 2NVQL 2E2HL 5FLML 5M5YL 3S15L 3RZOL 5M3ML 3S2HL 2E2JL 4BY1L 2JA6L 4A3JL 3GTGL 3S17L 4A3BL 4A3DL 3I4ML 4A93L 3S1RL 4AYBP 1TWGL 1I6HL 3S2DL 3H0GL 3S16L 5IYCL 1WCML 4A3IL 3S14L 4A3FL 4BBSL 1Y1WL 4A3LL 1TWFL 1TWCL 2VUML 3HOUL 3GTPL 4A3ML 3FKIL 4C3JL 4A3GL 3GTKL 4A3CL 4QIWP 3PO3L 3HOYL 3HOZL 3GTOL 3S1NL 3CQZL 2JA8L 5C4XL 3PO2L 5M3FL 2JA5L 2JA7L 2E2IL 5IP9L 2NVYL 1Y1VL 2PMZP 1TWHL 5C44L 2R93L 4X6AL 4Y7NL 3GTJL 3M3YL 2YU9L 5IP7L 3HOWL 4C3IL 2B63L 2NVTL 2NVXL 2R92L 5C3EL 3H3VM 4Y52L 1I50L 3K7AL 3GTLL 3RZDL 3I4NL 3S1ML 2WB1P 5M5XL 1SFOL 4BY7L 3GTQL 2R7ZL 5C4JL 4BXXL 3M4OL 3HOXL 3GTML 1I3QL 4BBRL 3S1QL 4C3HL 1K83L 2WAQP 4A3EL 5M5WL 1R9TL 3HOVL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0S P;  5IYB L;  1TWA L;  4A3K L;  5IYD L;  3HKZ P;  4C2M 1;  5FJ8 L;  2NVQ L;  2E2H L;  5FLM L;  5M5Y L;  3S15 L;  3RZO L;  5M3M L;  3S2H L;  2E2J L;  4BY1 L;  2JA6 L;  4A3J L;  3GTG L;  3S17 L;  4A3B L;  4A3D L;  3I4M L;  4A93 L;  3S1R L;  4AYB P;  1TWG L;  1I6H L;  3S2D L;  3H0G L;  3S16 L;  5IYC L;  1WCM L;  4A3I L;  3S14 L;  4A3F L;  4BBS L;  1Y1W L;  4A3L L;  1TWF L;  1TWC L;  2VUM L;  3HOU L;  3GTP L;  4A3M L;  3FKI L;  4C3J L;  4A3G L;  3GTK L;  4A3C L;  4QIW P;  3PO3 L;  3HOY L;  3HOZ L;  3GTO L;  3S1N L;  3CQZ L;  2JA8 L;  5C4X L;  3PO2 L;  5M3F L;  2JA5 L;  2JA7 L;  2E2I L;  5IP9 L;  2NVY L;  1Y1V L;  2PMZ P;  1TWH L;  5C44 L;  2R93 L;  4X6A L;  4Y7N L;  3GTJ L;  3M3Y L;  2YU9 L;  5IP7 L;  3HOW L;  4C3I L;  2B63 L;  2NVT L;  2NVX L;  2R92 L;  5C3E L;  3H3V M;  4Y52 L;  1I50 L;  3K7A L;  3GTL L;  3RZD L;  3I4N L;  3S1M L;  2WB1 P;  5M5X L;  1SFO L;  4BY7 L;  3GTQ L;  2R7Z L;  5C4J L;  4BXX L;  3M4O L;  3HOX L;  3GTM L;  1I3Q L;  4BBR L;  3S1Q L;  4C3H L;  1K83 L;  2WAQ P;  4A3E L;  5M5W L;  1R9T L;  3HOV L; 
#chains in the Genus database with same CATH topology
 4AI2 A;  1R0H A;  5IYD L;  4RXN A;  3PWF A;  3S15 L;  1WJV A;  3RZO L;  2JI1 A;  3S2H L;  3A44 A;  5MFZ A;  3GTG L;  4B8C D;  4AR5 A;  2O5J D;  1TWG L;  2XJS A;  5MF6 A;  3P2A A;  3H0G L;  2AYJ A;  3HAX C;  1T9Q A;  1TWC L;  8RXN A;  2KKD A;  3H9B A;  1P7P A;  3FKI L;  2JI3 A;  2PVX A;  4QIW P;  1DVB A;  3PO3 L;  4AR6 A;  4AR3 A;  1ODH A;  3GTO L;  2Z3Q B;  1FHM A;  3KYU A;  1VZI A;  2JA5 L;  3PKI A;  1OWC A;  3LWP B;  3J7Z 1;  4AI3 A;  1R0J A;  1NXE A;  5K2M E;  1PZX A;  4G6B A;  3B0A B;  3M3Y L;  2JI2 A;  4C3I L;  2NVX L;  2R92 L;  1SMW A;  1R0G A;  3H3V M;  3RYG A;  4Y52 L;  1FHH A;  3I4N L;  2J9U B;  4UY8 1;  2K2D A;  2C6B A;  5C4J L;  3LWO B;  4POG A;  4AHZ A;  3LNL A;  1PFV A;  3PZA A;  2XJP A;  3H97 A;  3J7Y 1;  1TWA L;  4A3K L;  3HKZ P;  4C2M 1;  2XJV A;  2CKC A;  3HJW B;  5RXN A;  5M3M L;  4A3J L;  4ZN1 B;  4GS7 D;  5MGN A;  4A93 L;  1IW7 D;  4AYB P;  3KYW A;  1YK4 A;  2V0F A;  5GAH c;  2HR5 A;  3LWV B;  1WCM L;  4A3I L;  4A3F L;  4WFN 1;  2A6H D;  2H12 A;  1S24 A;  3QVD A;  2PPT A;  2CKA A;  1SMM A;  4V19 6;  3RZT A;  1S30 A;  3CQZ L;  3B08 B;  2RFK B;  1NXG A;  1VZG A;  2R93 L;  5GAD c;  2MS3 A;  4X6A L;  3GTJ L;  3MPS A;  1OWB A;  2YU9 L;  5IP7 L;  2DSX A;  3JR7 A;  2B63 L;  1ZRP A;  3PIP 1;  5C3E L;  4AR4 A;  3K7A L;  1R0I A;  3LWQ B;  3H9C A;  3S1M L;  4AHW A;  1SFO L;  3GTQ L;  2XJU A;  2LCQ A;  1QQT A;  1YUX A;  3KYX A;  5AI3 A;  4U67 1;  1I3Q L;  2ERJ A;  4BBR L;  1SMU A;  1YUZ A;  4ZN3 B;  3S1Q L;  3P8B A;  1LKM A;  4JAE A;  1R9T L;  4K9F A;  4AHX A;  2CR8 A;  3HOV L;  1RYT A;  3H99 A;  1B71 A;  1F4L A;  4XGH A;  2A69 D;  4ME3 A;  3ZG6 A;  1RDV A;  3NFP I;  2GMG A;  5FLM L;  2E2J L;  4BY1 L;  2JA6 L;  1BFY A;  2AQC A;  1LKO A;  2VL6 A;  3S16 L;  2ERS A;  1IU5 A;  5IYC L;  4BBS L;  2VUM L;  5JVH 1;  4A3M L;  2RDV A;  5JVG 1;  4C3J L;  5IY0 A;  4A3G L;  3GTK L;  1CAA A;  4A3C L;  2KN9 A;  3LWR B;  1LKP A;  3KYV A;  3HOZ L;  3S1N L;  3VPB E;  2JA8 L;  2XJR A;  2V0E A;  2XJT A;  3RZ6 A;  2Z3R B;  3PO2 L;  3HJY B;  1DX8 A;  2JA7 L;  2E2I L;  7RXN A;  5DM7 1;  1JYB A;  1YK5 A;  3PKJ A;  5MLC 3;  1R0F A;  1TWH L;  3WWL A;  4Y7N L;  5DM6 1;  1YV1 A;  2NYD A;  4XXB B;  1RWD A;  3PIO 1;  1RYQ A;  1Z92 B;  2M4V A;  3K35 A;  3MQK B;  3GTL L;  2V3B B;  2WB1 P;  4AI0 A;  4BY7 L;  1BQ8 A;  1RDG A;  4BXX L;  4TPU A;  2A68 D;  3HOX L;  4E6Y A;  3GTM L;  2APO B;  1E8J A;  6RXN A;  4C3H L;  1BE7 A;  2WAQ P;  1BQ9 A;  1T9O A;  2Y0S P;  1LTL A;  5IYB L;  2PVE A;  3SS2 A;  3LPE B;  1VZH A;  2AUS B;  4AHY A;  5FJ8 L;  2NVQ L;  2E2H L;  4JAF A;  5M5Y L;  4A3B L;  3S17 L;  4A3D L;  3I4M L;  3S1R L;  2A6E D;  1I6H L;  3S2D L;  3IU3 I;  4YWM A;  5AN9 H;  2PSM C;  3MSU A;  1S2Z A;  3S14 L;  1B2J A;  5MFP A;  1T9P A;  1Y1W L;  4A3L L;  1TWF L;  1PFY A;  3HOU L;  3GTP L;  5H1S c;  2L0Z A;  2M6P A;  3FDJ A;  2XJQ A;  4LHL A;  1IRO A;  2PYA A;  3HOY L;  1BRF A;  1CAD A;  2BE5 D;  1C09 A;  2B5I D;  1QCV A;  1VCX A;  1QYB A;  1B2O A;  5C4X L;  3WWN B;  2QL0 A;  5M3F L;  2EY4 E;  1IU6 A;  5IP9 L;  2NVY L;  2ZIX A;  1Y1V L;  2HVY C;  1IRN A;  2PMZ P;  5GAE c;  5C44 L;  5EIO C;  1NNQ A;  2C6A A;  4JAD A;  3PL5 A;  3HOW L;  4LHN A;  2NVT L;  4AI1 A;  3QQC E;  1I50 L;  3RZD L;  5M5X L;  2R7Z L;  4JAG A;  3M4O L;  5GAG c;  4YWL A;  4POF A;  1PFW A;  4TVM A;  1K83 L;  5AI2 A;  4A3E L;  5EIN C;  5M5W L;  3KYY A;  1RB9 A;  2M4Y A;  1PFU A;  1B13 A;  2M6O A;  1H7V A; 
#chains in the Genus database with same CATH homology
 2Y0S P;  5IYB L;  1TWA L;  4A3K L;  5IYD L;  3HKZ P;  4C2M 1;  5FJ8 L;  2NVQ L;  2E2H L;  5FLM L;  5M5Y L;  3S15 L;  3RZO L;  5M3M L;  3S2H L;  2E2J L;  4BY1 L;  2JA6 L;  4A3J L;  3GTG L;  3S17 L;  4A3B L;  4A3D L;  3I4M L;  4A93 L;  3S1R L;  4AYB P;  1TWG L;  1I6H L;  3S2D L;  3H0G L;  3S16 L;  5IYC L;  1WCM L;  4A3I L;  3S14 L;  4A3F L;  4BBS L;  1Y1W L;  4A3L L;  1TWF L;  1TWC L;  2VUM L;  3HOU L;  3GTP L;  4A3M L;  3FKI L;  4C3J L;  4A3G L;  3GTK L;  4A3C L;  4QIW P;  3PO3 L;  3HOY L;  3HOZ L;  3GTO L;  3S1N L;  3CQZ L;  2JA8 L;  5C4X L;  3PO2 L;  5M3F L;  2JA5 L;  2JA7 L;  2E2I L;  5IP9 L;  2NVY L;  1Y1V L;  2PMZ P;  1TWH L;  5C44 L;  2R93 L;  4X6A L;  4Y7N L;  3GTJ L;  3M3Y L;  2YU9 L;  5IP7 L;  3HOW L;  4C3I L;  2B63 L;  2NVT L;  2NVX L;  2R92 L;  5C3E L;  3H3V M;  4Y52 L;  1I50 L;  3K7A L;  3GTL L;  3RZD L;  3I4N L;  3S1M L;  2WB1 P;  5M5X L;  1SFO L;  4BY7 L;  3GTQ L;  2R7Z L;  5C4J L;  4BXX L;  3M4O L;  3HOX L;  3GTM L;  1I3Q L;  4BBR L;  3S1Q L;  4C3H L;  1K83 L;  2WAQ P;  4A3E L;  5M5W L;  1R9T L;  3HOV L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...