3FMXX

Crystal structure of tartrate dehydrogenase from pseudomonas putida complexed with nadh
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
359
structure length
359
Chain Sequence
SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Tartrate dehydrogenase/decarboxylase
publication title Structural Characterization of Tartrate Dehydrogenase: a versatile enzyme catalyzing multiple reactions
rcsb
source organism Pseudomonas putida
total genus 95
structure length 359
sequence length 359
ec nomenclature ec 1.1.1.83: D-malate dehydrogenase (decarboxylating).
pdb deposition date 2008-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3fmxX00
5GRIB 3WZXA 1BL5A 3MASA 2D1CA 3VL3A 1PB3A 1CNZA 1ZORA 2UXRA 1GRPA 3WZVA 2Y42A 2G4OA 8ICDA 5L58A 1OSIA 1XACA 1P8FA 4UMXA 3LCBC 5K10A 6ICDA 1HEXA 3VMLA 5GRLA 3BLVA 2Y3ZA 2UXQA 4JA8A 1LWDA 3TSNA 1ISOA 2ZTWA 4WUOA 3US8A 4L04A 5J34A 4HCXA 4L06A 1IDCA 1X0LA 5HN5A 5GRFA 1WPWA 5HN6A 5GREA 1VI1A 1GC9A 4I3LA 4ICDA 3MAPA 1U7NA 4YB4A 3INMA 3WZWA 4AJAA 1T09A 3BLXB 3TNGA 5GRIA 1AI2A 4P69C 1PB1A 5LGEA 4IWHA 4AJRA 1WALA 3MASB 2E0CA 2D4VA 1PS6A 3UF6A 1TYOA 2QFYA 3WZYA 4F7IA 5DE1A 2E5MA 1SJSA 4AJSA 4XXVA 5HN4A 1T0LA 5ICDA 1V94A 3VL2A 7ICDA 3BLVB 5I95A 1OSJA 5J32A 3UDUA 1XAAA 1XGVA 4KZOA 3MARA 4XRXA 1HQSA 5GRHA 4BNPA 1IPDA 2IV0A 1AI3A 2QFWA 4I3KA 1DR8A 1HJ6A 2Y41A 3VL6A 4UMYA 1IKAA 3FMXX 5K11A 3U9EA 3ASJA 3VL7A 1V5BA 3TY3A 2HI1A 5GRFB 2AYQA 3VMJA 1IDDA 1GROA 3TY4A 1IDFA 3FLKA 1DPZA 9ICDA 3BLXA 1CW1A 3LXYA 1DR0A 2DHTA 3VL4A 5J33A 2Y40A 5HN3A 5L57A 1V53A 1XADA 1PTMA 4AOUA 3UDOA 1XKDA 5GRLB 4AJBA 3ICDA 1CW7A 1GC8A 3VKZA 4AJ3A 4XS3A 1R8KA 3R8WA 4ATYA 1G2UA 2QFXA 1VLCA 3AH3A 4Y1PA 1CM7A 1YXOA 1W0DA 1IDEA 1YCOA 5GREB 1A05A 4AOVA 3U1HA 3VMKA 4AOYA 3DMSA 5I96A 4AJCA 1CW4A 4JQPA 5GRHB 2QFVA 4L03A 1PS7A 1IDMA 1XABA
chains in the Genus database with same CATH superfamily
5GRIB 3WZXA 1BL5A 3MASA 2D1CA 3VL3A 1PB3A 1CNZA 1ZORA 2UXRA 1GRPA 3WZVA 2Y42A 2G4OA 8ICDA 5L58A 1OSIA 1XACA 1P8FA 4UMXA 3LCBC 5K10A 6ICDA 1HEXA 3VMLA 5GRLA 3BLVA 2Y3ZA 2UXQA 4JA8A 1LWDA 3TSNA 1ISOA 2ZTWA 4WUOA 3US8A 4L04A 5J34A 4HCXA 4L06A 1IDCA 1X0LA 5HN5A 5GRFA 1WPWA 5HN6A 5GREA 1VI1A 1GC9A 4I3LA 4ICDA 3MAPA 1U7NA 4YB4A 3INMA 3WZWA 4AJAA 1T09A 3BLXB 3TNGA 5GRIA 1AI2A 4P69C 1PB1A 5LGEA 4IWHA 4AJRA 1WALA 3MASB 2E0CA 2D4VA 1PS6A 3UF6A 1TYOA 2QFYA 3WZYA 4F7IA 5DE1A 2E5MA 1SJSA 4AJSA 4XXVA 5HN4A 1T0LA 5ICDA 1V94A 3VL2A 7ICDA 3BLVB 5I95A 1OSJA 5J32A 3UDUA 1XAAA 1XGVA 4KZOA 3MARA 4XRXA 1HQSA 5GRHA 4BNPA 1IPDA 2IV0A 1AI3A 2QFWA 4I3KA 1DR8A 1HJ6A 2Y41A 3VL6A 4UMYA 1IKAA 3FMXX 5K11A 3U9EA 3ASJA 3VL7A 1V5BA 3TY3A 2HI1A 5GRFB 2AYQA 3VMJA 1IDDA 1GROA 3TY4A 1IDFA 3FLKA 1DPZA 9ICDA 3BLXA 1CW1A 3LXYA 1DR0A 2DHTA 3VL4A 5J33A 2Y40A 5HN3A 5L57A 1V53A 1XADA 1PTMA 4AOUA 3UDOA 1XKDA 5GRLB 4AJBA 3ICDA 1CW7A 1GC8A 3VKZA 4AJ3A 4XS3A 1R8KA 3R8WA 4ATYA 1G2UA 2QFXA 1VLCA 3AH3A 4Y1PA 1CM7A 1YXOA 1W0DA 1IDEA 1YCOA 5GREB 1A05A 4AOVA 3U1HA 3VMKA 4AOYA 3DMSA 5I96A 4AJCA 1CW4A 4JQPA 5GRHB 2QFVA 4L03A 1PS7A 1IDMA 1XABA
chains in the Genus database with same CATH topology
5GRIB 3WZXA 1BL5A 3MASA 2D1CA 3VL3A 1PB3A 1CNZA 1ZORA 2UXRA 1GRPA 3WZVA 2Y42A 2G4OA 8ICDA 5L58A 1OSIA 1XACA 1P8FA 4UMXA 3LCBC 5K10A 6ICDA 1HEXA 3VMLA 5GRLA 3BLVA 2Y3ZA 2UXQA 4JA8A 1LWDA 3TSNA 1ISOA 2ZTWA 4WUOA 3US8A 4L04A 5J34A 4HCXA 4L06A 1IDCA 1X0LA 5HN5A 5GRFA 1WPWA 5HN6A 5GREA 1VI1A 1GC9A 4I3LA 4ICDA 3MAPA 1U7NA 4YB4A 3INMA 3WZWA 4AJAA 1T09A 3BLXB 3TNGA 5GRIA 1AI2A 4P69C 1PB1A 5LGEA 4IWHA 4AJRA 1WALA 3MASB 2E0CA 2D4VA 1PS6A 3UF6A 1TYOA 2QFYA 3WZYA 4F7IA 5DE1A 2E5MA 1SJSA 4AJSA 4XXVA 5HN4A 1T0LA 5ICDA 1V94A 3VL2A 7ICDA 3BLVB 5I95A 1OSJA 5J32A 3UDUA 1XAAA 1XGVA 4KZOA 3MARA 4XRXA 1HQSA 5GRHA 4BNPA 1IPDA 2IV0A 1AI3A 2QFWA 4I3KA 1DR8A 1HJ6A 2Y41A 3VL6A 4UMYA 1IKAA 3FMXX 5K11A 3U9EA 3ASJA 3VL7A 1V5BA 3TY3A 2HI1A 5GRFB 2AYQA 3VMJA 1IDDA 1GROA 3TY4A 1IDFA 3FLKA 1DPZA 9ICDA 3BLXA 1CW1A 3LXYA 1DR0A 2DHTA 3VL4A 5J33A 2Y40A 5HN3A 5L57A 1V53A 1XADA 1PTMA 4AOUA 3UDOA 1XKDA 5GRLB 4AJBA 3ICDA 1CW7A 1GC8A 3VKZA 4AJ3A 4XS3A 1R8KA 3R8WA 4ATYA 1G2UA 2QFXA 1VLCA 3AH3A 4Y1PA 1CM7A 1YXOA 1W0DA 1IDEA 1YCOA 5GREB 1A05A 4AOVA 3U1HA 3VMKA 4AOYA 3DMSA 5I96A 4AJCA 1CW4A 4JQPA 5GRHB 2QFVA 4L03A 1PS7A 1IDMA 1XABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GRI B;  3WZX A;  1BL5 A;  3MAS A;  2D1C A;  3VL3 A;  1PB3 A;  1CNZ A;  1ZOR A;  2UXR A;  1GRP A;  3WZV A;  2Y42 A;  2G4O A;  8ICD A;  5L58 A;  1OSI A;  1XAC A;  1P8F A;  4UMX A;  3LCB C;  5K10 A;  6ICD A;  1HEX A;  3VML A;  5GRL A;  3BLV A;  2Y3Z A;  2UXQ A;  4JA8 A;  1LWD A;  3TSN A;  1ISO A;  2ZTW A;  4WUO A;  3US8 A;  4L04 A;  5J34 A;  4HCX A;  4L06 A;  1IDC A;  1X0L A;  5HN5 A;  5GRF A;  1WPW A;  5HN6 A;  5GRE A;  1VI1 A;  1GC9 A;  4I3L A;  4ICD A;  3MAP A;  1U7N A;  4YB4 A;  3INM A;  3WZW A;  4AJA A;  1T09 A;  3BLX B;  3TNG A;  5GRI A;  1AI2 A;  4P69 C;  1PB1 A;  5LGE A;  4IWH A;  4AJR A;  1WAL A;  3MAS B;  2E0C A;  2D4V A;  1PS6 A;  3UF6 A;  1TYO A;  2QFY A;  3WZY A;  4F7I A;  5DE1 A;  2E5M A;  1SJS A;  4AJS A;  4XXV A;  5HN4 A;  1T0L A;  5ICD A;  1V94 A;  3VL2 A;  7ICD A;  3BLV B;  5I95 A;  1OSJ A;  5J32 A;  3UDU A;  1XAA A;  1XGV A;  4KZO A;  3MAR A;  4XRX A;  1HQS A;  5GRH A;  4BNP A;  1IPD A;  2IV0 A;  1AI3 A;  2QFW A;  4I3K A;  1DR8 A;  1HJ6 A;  2Y41 A;  3VL6 A;  4UMY A;  1IKA A;  3FMX X;  5K11 A;  3U9E A;  3ASJ A;  3VL7 A;  1V5B A;  3TY3 A;  2HI1 A;  5GRF B;  2AYQ A;  3VMJ A;  1IDD A;  1GRO A;  3TY4 A;  1IDF A;  3FLK A;  1DPZ A;  9ICD A;  3BLX A;  1CW1 A;  3LXY A;  1DR0 A;  2DHT A;  3VL4 A;  5J33 A;  2Y40 A;  5HN3 A;  5L57 A;  1V53 A;  1XAD A;  1PTM A;  4AOU A;  3UDO A;  1XKD A;  5GRL B;  4AJB A;  3ICD A;  1CW7 A;  1GC8 A;  3VKZ A;  4AJ3 A;  4XS3 A;  1R8K A;  3R8W A;  4ATY A;  1G2U A;  2QFX A;  1VLC A;  3AH3 A;  4Y1P A;  1CM7 A;  1YXO A;  1W0D A;  1IDE A;  1YCO A;  5GRE B;  1A05 A;  4AOV A;  3U1H A;  3VMK A;  4AOY A;  3DMS A;  5I96 A;  4AJC A;  1CW4 A;  4JQP A;  5GRH B;  2QFV A;  4L03 A;  1PS7 A;  1IDM A;  1XAB A; 
#chains in the Genus database with same CATH topology
 5GRI B;  3WZX A;  1BL5 A;  3MAS A;  2D1C A;  3VL3 A;  1PB3 A;  1CNZ A;  1ZOR A;  2UXR A;  1GRP A;  3WZV A;  2Y42 A;  2G4O A;  8ICD A;  5L58 A;  1OSI A;  1XAC A;  1P8F A;  4UMX A;  3LCB C;  5K10 A;  6ICD A;  1HEX A;  3VML A;  5GRL A;  3BLV A;  2Y3Z A;  2UXQ A;  4JA8 A;  1LWD A;  3TSN A;  1ISO A;  2ZTW A;  4WUO A;  3US8 A;  4L04 A;  5J34 A;  4HCX A;  4L06 A;  1IDC A;  1X0L A;  5HN5 A;  5GRF A;  1WPW A;  5HN6 A;  5GRE A;  1VI1 A;  1GC9 A;  4I3L A;  4ICD A;  3MAP A;  1U7N A;  4YB4 A;  3INM A;  3WZW A;  4AJA A;  1T09 A;  3BLX B;  3TNG A;  5GRI A;  1AI2 A;  4P69 C;  1PB1 A;  5LGE A;  4IWH A;  4AJR A;  1WAL A;  3MAS B;  2E0C A;  2D4V A;  1PS6 A;  3UF6 A;  1TYO A;  2QFY A;  3WZY A;  4F7I A;  5DE1 A;  2E5M A;  1SJS A;  4AJS A;  4XXV A;  5HN4 A;  1T0L A;  5ICD A;  1V94 A;  3VL2 A;  7ICD A;  3BLV B;  5I95 A;  1OSJ A;  5J32 A;  3UDU A;  1XAA A;  1XGV A;  4KZO A;  3MAR A;  4XRX A;  1HQS A;  5GRH A;  4BNP A;  1IPD A;  2IV0 A;  1AI3 A;  2QFW A;  4I3K A;  1DR8 A;  1HJ6 A;  2Y41 A;  3VL6 A;  4UMY A;  1IKA A;  3FMX X;  5K11 A;  3U9E A;  3ASJ A;  3VL7 A;  1V5B A;  3TY3 A;  2HI1 A;  5GRF B;  2AYQ A;  3VMJ A;  1IDD A;  1GRO A;  3TY4 A;  1IDF A;  3FLK A;  1DPZ A;  9ICD A;  3BLX A;  1CW1 A;  3LXY A;  1DR0 A;  2DHT A;  3VL4 A;  5J33 A;  2Y40 A;  5HN3 A;  5L57 A;  1V53 A;  1XAD A;  1PTM A;  4AOU A;  3UDO A;  1XKD A;  5GRL B;  4AJB A;  3ICD A;  1CW7 A;  1GC8 A;  3VKZ A;  4AJ3 A;  4XS3 A;  1R8K A;  3R8W A;  4ATY A;  1G2U A;  2QFX A;  1VLC A;  3AH3 A;  4Y1P A;  1CM7 A;  1YXO A;  1W0D A;  1IDE A;  1YCO A;  5GRE B;  1A05 A;  4AOV A;  3U1H A;  3VMK A;  4AOY A;  3DMS A;  5I96 A;  4AJC A;  1CW4 A;  4JQP A;  5GRH B;  2QFV A;  4L03 A;  1PS7 A;  1IDM A;  1XAB A; 
#chains in the Genus database with same CATH homology
 5GRI B;  3WZX A;  1BL5 A;  3MAS A;  2D1C A;  3VL3 A;  1PB3 A;  1CNZ A;  1ZOR A;  2UXR A;  1GRP A;  3WZV A;  2Y42 A;  2G4O A;  8ICD A;  5L58 A;  1OSI A;  1XAC A;  1P8F A;  4UMX A;  3LCB C;  5K10 A;  6ICD A;  1HEX A;  3VML A;  5GRL A;  3BLV A;  2Y3Z A;  2UXQ A;  4JA8 A;  1LWD A;  3TSN A;  1ISO A;  2ZTW A;  4WUO A;  3US8 A;  4L04 A;  5J34 A;  4HCX A;  4L06 A;  1IDC A;  1X0L A;  5HN5 A;  5GRF A;  1WPW A;  5HN6 A;  5GRE A;  1VI1 A;  1GC9 A;  4I3L A;  4ICD A;  3MAP A;  1U7N A;  4YB4 A;  3INM A;  3WZW A;  4AJA A;  1T09 A;  3BLX B;  3TNG A;  5GRI A;  1AI2 A;  4P69 C;  1PB1 A;  5LGE A;  4IWH A;  4AJR A;  1WAL A;  3MAS B;  2E0C A;  2D4V A;  1PS6 A;  3UF6 A;  1TYO A;  2QFY A;  3WZY A;  4F7I A;  5DE1 A;  2E5M A;  1SJS A;  4AJS A;  4XXV A;  5HN4 A;  1T0L A;  5ICD A;  1V94 A;  3VL2 A;  7ICD A;  3BLV B;  5I95 A;  1OSJ A;  5J32 A;  3UDU A;  1XAA A;  1XGV A;  4KZO A;  3MAR A;  4XRX A;  1HQS A;  5GRH A;  4BNP A;  1IPD A;  2IV0 A;  1AI3 A;  2QFW A;  4I3K A;  1DR8 A;  1HJ6 A;  2Y41 A;  3VL6 A;  4UMY A;  1IKA A;  3FMX X;  5K11 A;  3U9E A;  3ASJ A;  3VL7 A;  1V5B A;  3TY3 A;  2HI1 A;  5GRF B;  2AYQ A;  3VMJ A;  1IDD A;  1GRO A;  3TY4 A;  1IDF A;  3FLK A;  1DPZ A;  9ICD A;  3BLX A;  1CW1 A;  3LXY A;  1DR0 A;  2DHT A;  3VL4 A;  5J33 A;  2Y40 A;  5HN3 A;  5L57 A;  1V53 A;  1XAD A;  1PTM A;  4AOU A;  3UDO A;  1XKD A;  5GRL B;  4AJB A;  3ICD A;  1CW7 A;  1GC8 A;  3VKZ A;  4AJ3 A;  4XS3 A;  1R8K A;  3R8W A;  4ATY A;  1G2U A;  2QFX A;  1VLC A;  3AH3 A;  4Y1P A;  1CM7 A;  1YXO A;  1W0D A;  1IDE A;  1YCO A;  5GRE B;  1A05 A;  4AOV A;  3U1H A;  3VMK A;  4AOY A;  3DMS A;  5I96 A;  4AJC A;  1CW4 A;  4JQP A;  5GRH B;  2QFV A;  4L03 A;  1PS7 A;  1IDM A;  1XAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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