3FOVA

Crystal structure of protein rpa0323 of unknown function from rhodopseudomonas palustris
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
108
structure length
102
Chain Sequence
SAEASAADYLERQGYRILARRFKTRCGEIDLVAQRDALVAFVEVKARAYAVTPRQQSRIVAAAEAWLSRHPEHAMSELRFDAILIAPNTAPRHLPGAFDATP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title X-ray crystal structure of protein RPA0323 of unknown function from Rhodopseudomonas palustris.
rcsb
molecule tags Structural genomics, unknown function
source organism Rhodopseudomonas palustris
molecule keywords UPF0102 protein RPA0323
total genus 31
structure length 102
sequence length 108
ec nomenclature
pdb deposition date 2009-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02021 UPF0102 Uncharacterised protein family UPF0102
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 3fovA00
1IPIA 1GEFA 1RZNA 1ZP7A 3P1ZB 5FDKA 1RLVA 1Y88A 1HH1A 2WIZA 3IEYA 3DNXA 2FCOA 4QBLA 3AJVA 2WJ0A 2VLDA 4QBOA 1R11A 1A79A 2WCWA 3P1ZA 2OSTA 2CV8A 4TKDA 2OKFA 1F1ZA 1T0FA 1R0VA 4TKKA 2INBA 1OB8A 1Y1OA 2WIWA 2WCZA 2GW6A 2ZYZB 3P1YA 2EO0A 1XMXA 3FOVA 4QBNA 2GJWA 3AJVB 2ZYZA 1OB9A
chains in the Genus database with same CATH superfamily
1IPIA 1GEFA 1RZNA 4G6UA 1ZP7A 3P1ZB 4E6ZA 1RLVA 1Y88A 5FDKA 1HH1A 2WIZA 3IEYA 4ZQUA 3DNXA 4DAPA 2FCOA 4QBLA 3AJVA 2WJ0A 1YNMA 2VLDA 4QBOA 1R11A 1A79A 4DA2A 2WCWA 3P1ZA 2FKCA 2OSTA 2CV8A 2IXSA 2Z0RA 4TKDA 2VS1A 2OKFA 2FL3A 1F1ZA 1T0FA 1R0VA 3IF0X 4TKKA 2INBA 2FKHB 2JJQA 4DAVA 1OB8A 1Y1OA 2WIWA 2WCZA 2GW6A 2ZYZB 3P1YA 4LQEA 2CZRA 2EO0A 1XMXA 3FOVA 3BT7A 4QBNA 2BH2A 2FLCA 2GJWA 2DBSA 3IEYB 4EV1A 4G6VA 1UWVA 2W8MA 3AJVB 2ZYZA 1OB9A
chains in the Genus database with same CATH topology
1IPIA 1GEFA 1RZNA 4G6UA 1ZP7A 3P1ZB 4E6ZA 1RLVA 1Y88A 5FDKA 1HH1A 2WIZA 3IEYA 4ZQUA 3DNXA 4DAPA 2FCOA 4QBLA 3AJVA 2WJ0A 1YNMA 2VLDA 4QBOA 1R11A 1A79A 4DA2A 2WCWA 3P1ZA 2FKCA 2OSTA 2CV8A 2IXSA 2Z0RA 4TKDA 2VS1A 2OKFA 2FL3A 1F1ZA 1T0FA 1R0VA 3IF0X 4TKKA 2INBA 2FKHB 2JJQA 4DAVA 1OB8A 1Y1OA 2WIWA 2WCZA 2GW6A 2ZYZB 3P1YA 4LQEA 2CZRA 2EO0A 1XMXA 3FOVA 3BT7A 4QBNA 2BH2A 2FLCA 2GJWA 2DBSA 3IEYB 4EV1A 4G6VA 1UWVA 2W8MA 3AJVB 2ZYZA 1OB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IPI A;  1GEF A;  1RZN A;  1ZP7 A;  3P1Z B;  5FDK A;  1RLV A;  1Y88 A;  1HH1 A;  2WIZ A;  3IEY A;  3DNX A;  2FCO A;  4QBL A;  3AJV A;  2WJ0 A;  2VLD A;  4QBO A;  1R11 A;  1A79 A;  2WCW A;  3P1Z A;  2OST A;  2CV8 A;  4TKD A;  2OKF A;  1F1Z A;  1T0F A;  1R0V A;  4TKK A;  2INB A;  1OB8 A;  1Y1O A;  2WIW A;  2WCZ A;  2GW6 A;  2ZYZ B;  3P1Y A;  2EO0 A;  1XMX A;  3FOV A;  4QBN A;  2GJW A;  3AJV B;  2ZYZ A;  1OB9 A; 
#chains in the Genus database with same CATH topology
 1IPI A;  1GEF A;  1RZN A;  4G6U A;  1ZP7 A;  3P1Z B;  4E6Z A;  1RLV A;  1Y88 A;  5FDK A;  1HH1 A;  2WIZ A;  3IEY A;  4ZQU A;  3DNX A;  4DAP A;  2FCO A;  4QBL A;  3AJV A;  2WJ0 A;  1YNM A;  2VLD A;  4QBO A;  1R11 A;  1A79 A;  4DA2 A;  2WCW A;  3P1Z A;  2FKC A;  2OST A;  2CV8 A;  2IXS A;  2Z0R A;  4TKD A;  2VS1 A;  2OKF A;  2FL3 A;  1F1Z A;  1T0F A;  1R0V A;  3IF0 X;  4TKK A;  2INB A;  2FKH B;  2JJQ A;  4DAV A;  1OB8 A;  1Y1O A;  2WIW A;  2WCZ A;  2GW6 A;  2ZYZ B;  3P1Y A;  4LQE A;  2CZR A;  2EO0 A;  1XMX A;  3FOV A;  3BT7 A;  4QBN A;  2BH2 A;  2FLC A;  2GJW A;  2DBS A;  3IEY B;  4EV1 A;  4G6V A;  1UWV A;  2W8M A;  3AJV B;  2ZYZ A;  1OB9 A; 
#chains in the Genus database with same CATH homology
 1IPI A;  1GEF A;  1RZN A;  4G6U A;  1ZP7 A;  3P1Z B;  4E6Z A;  1RLV A;  1Y88 A;  5FDK A;  1HH1 A;  2WIZ A;  3IEY A;  4ZQU A;  3DNX A;  4DAP A;  2FCO A;  4QBL A;  3AJV A;  2WJ0 A;  1YNM A;  2VLD A;  4QBO A;  1R11 A;  1A79 A;  4DA2 A;  2WCW A;  3P1Z A;  2FKC A;  2OST A;  2CV8 A;  2IXS A;  2Z0R A;  4TKD A;  2VS1 A;  2OKF A;  2FL3 A;  1F1Z A;  1T0F A;  1R0V A;  3IF0 X;  4TKK A;  2INB A;  2FKH B;  2JJQ A;  4DAV A;  1OB8 A;  1Y1O A;  2WIW A;  2WCZ A;  2GW6 A;  2ZYZ B;  3P1Y A;  4LQE A;  2CZR A;  2EO0 A;  1XMX A;  3FOV A;  3BT7 A;  4QBN A;  2BH2 A;  2FLC A;  2GJW A;  2DBS A;  3IEY B;  4EV1 A;  4G6V A;  1UWV A;  2W8M A;  3AJV B;  2ZYZ A;  1OB9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...