3FS3A

Crystal structure of malaria parasite nucleosome assembly protein (nap)
Total Genus 65
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
249
structure length
197
Chain Sequence
TDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKGFILSFYFATNPFFSNSVLTKTYHMKVLLHTEATVIDWYDNKNILKKRDSFFHFFTSHKVEVAQLEMIIEGDYEVALTIKERIIPYAVDYYLGII
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of malaria parasite nucleosome assembly protein: distinct modes of protein localization and histone recognition.
pubmed doi rcsb
molecule tags Chaperone
source organism Plasmodium falciparum
molecule keywords Nucleosome assembly protein 1, putative
total genus 65
structure length 197
sequence length 249
ec nomenclature
pdb deposition date 2009-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00956 NAP Nucleosome assembly protein (NAP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.90 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain Arylsulfatase, C-terminal domain 3fs3A02
3FS3A 3GYWA 3GYVA 3HFDA 5DAYA 2E50A
chains in the Genus database with same CATH superfamily
3LM3A 2OGQA 4N7ZA 3LXQA 3P37A 4E9DA 3KDRA 4YYPA 1E1ZP 1FSUA 4FDIA 1HDHA 4NK7A 4O6WA 1E2TA 3RQ7A 3P35A 4N7VA 1F34B 4H5XA 3P34A 1P49A 3HIHA 4LKMA 4O56A 3GYWA 4WHHA 4X9WA 2I9XA 4CYSA 2QZUA 3HIKA 5DMSA 4N9JA 2I9ZA 3GYVA 4H71A 1E2SP 2OJXA 4NKBA 1AUKA 4G7NA 3P2ZA 2E50A 3Q1IA 4HY2A 1N2KA 1F32A 4O9WA 5DNJA 5AJ9A 3HMJG 5DAYA 1N2LA 2UV8G 1A87A 4WHKA 4CXKA 4HCOA 3FS3A 5LHZA 4LKLA 4E9CA 4CXUA 2VKZG 4WHLA 1E3CP 1UMWA 4J7BB 4CYRA 4X9RA 2IA9A 4XB0A 1Q4KA 4DFWA 1Q4OA 5J19A 3ED4A 3HFDA 2N19A 3FVHA 1E33P 5DMVC 4FDJA 3C5LA 4HABA 3P36A 3BZIA 4X9VA 4E67A 4CXSA 4RCPA 4RS6A 3P2WA
chains in the Genus database with same CATH topology
2VKZG 1E3CP 3LM3A 1N2KA 4CYRA 1P49A 4N7ZA 5AJ9A 3LXQA 3KDRA 3GYWA 3ED4A 3HFDA 3HMJG 5DAYA 1N2LA 1E33P 1E1ZP 4CYSA 2UV8G 2QZUA 4N9JA 4CXKA 3GYVA 4FDJA 1E2SP 1FSUA 4FDIA 4NKBA 1AUKA 3FS3A 4G7NA 1HDHA 4NK7A 1E2TA 4CXSA 4CXUA 2E50A 4N7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FS3 A;  3GYW A;  3GYV A;  3HFD A;  5DAY A;  2E50 A; 
#chains in the Genus database with same CATH topology
 3LM3 A;  2OGQ A;  4N7Z A;  3LXQ A;  3P37 A;  4E9D A;  3KDR A;  4YYP A;  1E1Z P;  1FSU A;  4FDI A;  1HDH A;  4NK7 A;  4O6W A;  1E2T A;  3RQ7 A;  3P35 A;  4N7V A;  1F34 B;  4H5X A;  3P34 A;  1P49 A;  3HIH A;  4LKM A;  4O56 A;  3GYW A;  4WHH A;  4X9W A;  2I9X A;  4CYS A;  2QZU A;  3HIK A;  5DMS A;  4N9J A;  2I9Z A;  3GYV A;  4H71 A;  1E2S P;  2OJX A;  4NKB A;  1AUK A;  4G7N A;  3P2Z A;  2E50 A;  3Q1I A;  4HY2 A;  1N2K A;  1F32 A;  4O9W A;  5DNJ A;  5AJ9 A;  3HMJ G;  5DAY A;  1N2L A;  2UV8 G;  1A87 A;  4WHK A;  4CXK A;  4HCO A;  3FS3 A;  5LHZ A;  4LKL A;  4E9C A;  4CXU A;  2VKZ G;  4WHL A;  1E3C P;  1UMW A;  4J7B B;  4CYR A;  4X9R A;  2IA9 A;  4XB0 A;  1Q4K A;  4DFW A;  1Q4O A;  5J19 A;  3ED4 A;  3HFD A;  2N19 A;  3FVH A;  1E33 P;  5DMV C;  4FDJ A;  3C5L A;  4HAB A;  3P36 A;  3BZI A;  4X9V A;  4E67 A;  4CXS A;  4RCP A;  4RS6 A;  3P2W A; 
#chains in the Genus database with same CATH homology
 2VKZ G;  1E3C P;  3LM3 A;  1N2K A;  4CYR A;  1P49 A;  4N7Z A;  5AJ9 A;  3LXQ A;  3KDR A;  3GYW A;  3ED4 A;  3HFD A;  3HMJ G;  5DAY A;  1N2L A;  1E33 P;  1E1Z P;  4CYS A;  2UV8 G;  2QZU A;  4N9J A;  4CXK A;  3GYV A;  4FDJ A;  1E2S P;  1FSU A;  4FDI A;  4NKB A;  1AUK A;  3FS3 A;  4G7N A;  1HDH A;  4NK7 A;  1E2T A;  4CXS A;  4CXU A;  2E50 A;  4N7V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...