3FW7A

Structure of berberine bridge enzyme, h104a variant
Total Genus 173
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
498
structure length
498
Chain Sequence
AGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
molecule keywords Reticuline oxidase
total genus 173
structure length 498
sequence length 498
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw7A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw7A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw7A03
1V97A 3FW7A 1FFUC 5L6FA 2EXRA 3ETRB 3S1EA 1FIQB 1E8HA 1W1OA 2VFUA 5FXDA 5D79A 1WVFA 3RJ8A 1VDVA 1JROA 2WDWA 3D2HA 3D2DA 5AE2A 2GQTA 1WVEA 1AHVA 1QLTA 4PVKA 3PM9A 4PVJA 4JB1A 2I0KA 3BW7A 4MLAA 2AXRA 2IPIA 1FFVC 1DIQA 3W8WA 5K8EA 1VAOA 5FXEA 2QKNA 3GSYA 5I1WA 1ZXIC 3PQBA 1ZR6A 3W8ZA 1N5WC 5AE3A 4EC3A 3NVZB 1W1SA 1F0XA 5FXFA 3TSHA 3EUB3 2Q4WA 2W55A 1AHZA 1W1JA 1HSKA 1N62C 1W1LA 3JS8A 4XLOA 5ADZA 1N60C 3AM9A 1MBTA 3B9JB 1I19A 3NRZB 4O95A 3FW8A 2W3SA 4PYTA 3S1CA 2GQUA 4OALA 3C0PA 4ZOHB 1N5XA 3DQ0A 3D2JA 4BC7A 1T3QC 2BVHA 2Y4GA 5HQXA 3TX1A 2Y3SA 2QPMA 1E0YA 2Q85A 4PWCA 3AN1A 4BCAA 2VFRA 1W1QA 4PZFA 3NS1B 1N63C 2VFTA 4UD8A 5L6GA 5FXPA 2MBRA 2Y08A 1FO4A 1DZNA 3VTEA 2Y3RA 2W3RA 5HHZA 3I99A 1WYGA 1AHUA 4PVEA 3TSJA 4PWBA 1E8GA 1QLUA 3S1FA 3AMZA 1UXYA 4BBYA 4BC9A 2BVGA 5I1VA 5HMRA 2E3TA 2VFSA 1W1MA 1W1KA 5AWVA 3SR6B 2VFVA 2W54A 3HSUA 3KJMA 4ML8A 1W1RA 4PVHA 4JAYA 4DNSA 1DIIA 3S1DA 5AE1A 1N61C 3FW9A 1E8FA 1MBBA 3FWAA 3POPA 2BVFA 3RJAA 2VAOA 3W8XA
chains in the Genus database with same CATH superfamily
1V97A 3FW7A 2UUUA 1FFUC 5L6FA 2EXRA 3ETRB 3S1EA 1FIQB 1E8HA 1W1OA 2VFUA 5FXDA 4HG0A 2R8DA 5D79A 1WVFA 3RJ8A 1VDVA 1JROA 3EJDB 2WDWA 3D2HA 3D2DA 5AE2A 2GQTA 2P3HA 1WVEA 1AHVA 1QLTA 4PVKA 3PM9A 4PVJA 3LLBA 4JB1A 2I0KA 3BW7A 2P13A 4MLAA 2AXRA 2IPIA 1FFVC 1DIQA 3NVYB 3W8WA 5K8EA 1VAOA 5FXEA 2QKNA 3GSYA 2O3GA 1ZXIC 3PQBA 5I1WA 1ZR6A 3W8ZA 2RK5A 1N5WC 5AE3A 4EC3A 3NVZB 1W1SA 1F0XA 5FXFA 3TSHA 3EUB3 2Q4WA 2W55A 1AHZA 1W1JA 1HSKA 1N62C 1W1LA 3EJEB 3JS8A 4XLOA 5ADZA 1N60C 3AM9A 1MBTA 3B9JB 1I19A 3NRZB 4O95A 3FW8A 3NVVB 2W3SA 2UUVA 3LAEA 4PYTA 3S1CA 2GQUA 4OALA 3C0PA 4ZOHB 1N5XA 3DQ0A 3D2JA 4BC7A 1T3QC 2BVHA 2Y4GA 5HQXA 3TX1A 2Y3SA 2QPMA 1E0YA 2Q85A 4PWCA 3AN1A 4BCAA 2VFRA 1W1QA 1RM6B 4PZFA 3DEDA 3NS1B 1N63C 2VFTA 4UD8A 5L6GA 5FXPA 2PLSA 2MBRA 2Y08A 1JRPA 1FO4A 1DZNA 3VTEA 1SB3B 2Y3RA 2W3RA 5HHZA 3I99A 1WYGA 1AHUA 4PVEA 3TSJA 4PWBA 1E8GA 3NVWB 1QLUA 3EJBB 3S1FA 3AMZA 1UXYA 4BBYA 4BC9A 2BVGA 3HRDC 5I1VA 5HMRA 2E3TA 2NQWA 5G5HB 2R2ZA 2VFSA 2YVSA 1W1MA 1W1KA 2OAIA 2P4PA 5AWVA 2PLIA 5G5GB 3SR6B 2VFVA 2W54A 3HSUA 3KJMA 4ML8A 1W1RA 4PVHA 4JAYA 4DNSA 1DIIA 3S1DA 5AE1A 1N61C 3FW9A 1E8FA 1MBBA 3FWAA 3POPA 2BVFA 3RJAA 2VAOA 3W8XA
chains in the Genus database with same CATH topology
1V97A 3FW7A 2UUUA 1FFUC 5L6FA 2EXRA 3ETRB 3S1EA 1FIQB 1E8HA 1W1OA 2VFUA 5FXDA 4HG0A 2R8DA 5D79A 1WVFA 3RJ8A 1VDVA 1JROA 2WDWA 3D2HA 3D2DA 5AE2A 2GQTA 2P3HA 1WVEA 1AHVA 1QLTA 4PVKA 3PM9A 4PVJA 3LLBA 4JB1A 2I0KA 3BW7A 2P13A 4MLAA 2AXRA 2IPIA 1FFVC 1DIQA 3W8WA 3NVYB 5K8EA 1VAOA 5FXEA 2QKNA 3GSYA 2O3GA 1ZXIC 3PQBA 5I1WA 1ZR6A 3W8ZA 2RK5A 1N5WC 5AE3A 4EC3A 3NVZB 1W1SA 1F0XA 5FXFA 3TSHA 3EUB3 2Q4WA 2W55A 1AHZA 1W1JA 1HSKA 1N62C 1W1LA 3JS8A 4XLOA 5ADZA 1N60C 3AM9A 1MBTA 3B9JB 1I19A 3NRZB 4O95A 3FW8A 3NVVB 2W3SA 2UUVA 3LAEA 4PYTA 3S1CA 2GQUA 4OALA 3C0PA 4ZOHB 1N5XA 3DQ0A 3D2JA 4BC7A 1T3QC 2BVHA 2Y4GA 5HQXA 3TX1A 2Y3SA 2QPMA 1E0YA 2Q85A 4PWCA 3AN1A 4BCAA 2VFRA 1W1QA 1RM6B 4PZFA 3DEDA 3NS1B 1N63C 2VFTA 4UD8A 5L6GA 5FXPA 2PLSA 2MBRA 2Y08A 1JRPA 1FO4A 1DZNA 3VTEA 1SB3B 2Y3RA 2W3RA 5HHZA 3I99A 1WYGA 1AHUA 4PVEA 3TSJA 4PWBA 1E8GA 3NVWB 1QLUA 3S1FA 3AMZA 1UXYA 4BBYA 4BC9A 2BVGA 3HRDC 5I1VA 5HMRA 2E3TA 2NQWA 5G5HB 2R2ZA 2VFSA 2YVSA 1W1MA 1W1KA 2OAIA 2P4PA 5AWVA 2PLIA 5G5GB 3SR6B 2VFVA 2W54A 3HSUA 3KJMA 4ML8A 1W1RA 4PVHA 4JAYA 4DNSA 1DIIA 3S1DA 5AE1A 1N61C 3FW9A 1E8FA 1MBBA 3FWAA 3POPA 2BVFA 3RJAA 2VAOA 3W8XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V97 A;  3FW7 A;  1FFU C;  5L6F A;  2EXR A;  3ETR B;  3S1E A;  1FIQ B;  1E8H A;  1W1O A;  2VFU A;  5FXD A;  5D79 A;  1WVF A;  3RJ8 A;  1VDV A;  1JRO A;  2WDW A;  3D2H A;  3D2D A;  5AE2 A;  2GQT A;  1WVE A;  1AHV A;  1QLT A;  4PVK A;  3PM9 A;  4PVJ A;  4JB1 A;  2I0K A;  3BW7 A;  4MLA A;  2AXR A;  2IPI A;  1FFV C;  1DIQ A;  3W8W A;  5K8E A;  1VAO A;  5FXE A;  2QKN A;  3GSY A;  5I1W A;  1ZXI C;  3PQB A;  1ZR6 A;  3W8Z A;  1N5W C;  5AE3 A;  4EC3 A;  3NVZ B;  1W1S A;  1F0X A;  5FXF A;  3TSH A;  3EUB 3;  2Q4W A;  2W55 A;  1AHZ A;  1W1J A;  1HSK A;  1N62 C;  1W1L A;  3JS8 A;  4XLO A;  5ADZ A;  1N60 C;  3AM9 A;  1MBT A;  3B9J B;  1I19 A;  3NRZ B;  4O95 A;  3FW8 A;  2W3S A;  4PYT A;  3S1C A;  2GQU A;  4OAL A;  3C0P A;  4ZOH B;  1N5X A;  3DQ0 A;  3D2J A;  4BC7 A;  1T3Q C;  2BVH A;  2Y4G A;  5HQX A;  3TX1 A;  2Y3S A;  2QPM A;  1E0Y A;  2Q85 A;  4PWC A;  3AN1 A;  4BCA A;  2VFR A;  1W1Q A;  4PZF A;  3NS1 B;  1N63 C;  2VFT A;  4UD8 A;  5L6G A;  5FXP A;  2MBR A;  2Y08 A;  1FO4 A;  1DZN A;  3VTE A;  2Y3R A;  2W3R A;  5HHZ A;  3I99 A;  1WYG A;  1AHU A;  4PVE A;  3TSJ A;  4PWB A;  1E8G A;  1QLU A;  3S1F A;  3AMZ A;  1UXY A;  4BBY A;  4BC9 A;  2BVG A;  5I1V A;  5HMR A;  2E3T A;  2VFS A;  1W1M A;  1W1K A;  5AWV A;  3SR6 B;  2VFV A;  2W54 A;  3HSU A;  3KJM A;  4ML8 A;  1W1R A;  4PVH A;  4JAY A;  4DNS A;  1DII A;  3S1D A;  5AE1 A;  1N61 C;  3FW9 A;  1E8F A;  1MBB A;  3FWA A;  3POP A;  2BVF A;  3RJA A;  2VAO A;  3W8X A; 
#chains in the Genus database with same CATH topology
 1V97 A;  3FW7 A;  2UUU A;  1FFU C;  5L6F A;  2EXR A;  3ETR B;  3S1E A;  1FIQ B;  1E8H A;  1W1O A;  2VFU A;  5FXD A;  4HG0 A;  2R8D A;  5D79 A;  1WVF A;  3RJ8 A;  1VDV A;  1JRO A;  3EJD B;  2WDW A;  3D2H A;  3D2D A;  5AE2 A;  2GQT A;  2P3H A;  1WVE A;  1AHV A;  1QLT A;  4PVK A;  3PM9 A;  4PVJ A;  3LLB A;  4JB1 A;  2I0K A;  3BW7 A;  2P13 A;  4MLA A;  2AXR A;  2IPI A;  1FFV C;  1DIQ A;  3NVY B;  3W8W A;  5K8E A;  1VAO A;  5FXE A;  2QKN A;  3GSY A;  2O3G A;  1ZXI C;  3PQB A;  5I1W A;  1ZR6 A;  3W8Z A;  2RK5 A;  1N5W C;  5AE3 A;  4EC3 A;  3NVZ B;  1W1S A;  1F0X A;  5FXF A;  3TSH A;  3EUB 3;  2Q4W A;  2W55 A;  1AHZ A;  1W1J A;  1HSK A;  1N62 C;  1W1L A;  3EJE B;  3JS8 A;  4XLO A;  5ADZ A;  1N60 C;  3AM9 A;  1MBT A;  3B9J B;  1I19 A;  3NRZ B;  4O95 A;  3FW8 A;  3NVV B;  2W3S A;  2UUV A;  3LAE A;  4PYT A;  3S1C A;  2GQU A;  4OAL A;  3C0P A;  4ZOH B;  1N5X A;  3DQ0 A;  3D2J A;  4BC7 A;  1T3Q C;  2BVH A;  2Y4G A;  5HQX A;  3TX1 A;  2Y3S A;  2QPM A;  1E0Y A;  2Q85 A;  4PWC A;  3AN1 A;  4BCA A;  2VFR A;  1W1Q A;  1RM6 B;  4PZF A;  3DED A;  3NS1 B;  1N63 C;  2VFT A;  4UD8 A;  5L6G A;  5FXP A;  2PLS A;  2MBR A;  2Y08 A;  1JRP A;  1FO4 A;  1DZN A;  3VTE A;  1SB3 B;  2Y3R A;  2W3R A;  5HHZ A;  3I99 A;  1WYG A;  1AHU A;  4PVE A;  3TSJ A;  4PWB A;  1E8G A;  3NVW B;  1QLU A;  3EJB B;  3S1F A;  3AMZ A;  1UXY A;  4BBY A;  4BC9 A;  2BVG A;  3HRD C;  5I1V A;  5HMR A;  2E3T A;  2NQW A;  5G5H B;  2R2Z A;  2VFS A;  2YVS A;  1W1M A;  1W1K A;  2OAI A;  2P4P A;  5AWV A;  2PLI A;  5G5G B;  3SR6 B;  2VFV A;  2W54 A;  3HSU A;  3KJM A;  4ML8 A;  1W1R A;  4PVH A;  4JAY A;  4DNS A;  1DII A;  3S1D A;  5AE1 A;  1N61 C;  3FW9 A;  1E8F A;  1MBB A;  3FWA A;  3POP A;  2BVF A;  3RJA A;  2VAO A;  3W8X A; 
#chains in the Genus database with same CATH homology
 1V97 A;  3FW7 A;  2UUU A;  1FFU C;  5L6F A;  2EXR A;  3ETR B;  3S1E A;  1FIQ B;  1E8H A;  1W1O A;  2VFU A;  5FXD A;  4HG0 A;  2R8D A;  5D79 A;  1WVF A;  3RJ8 A;  1VDV A;  1JRO A;  2WDW A;  3D2H A;  3D2D A;  5AE2 A;  2GQT A;  2P3H A;  1WVE A;  1AHV A;  1QLT A;  4PVK A;  3PM9 A;  4PVJ A;  3LLB A;  4JB1 A;  2I0K A;  3BW7 A;  2P13 A;  4MLA A;  2AXR A;  2IPI A;  1FFV C;  1DIQ A;  3W8W A;  3NVY B;  5K8E A;  1VAO A;  5FXE A;  2QKN A;  3GSY A;  2O3G A;  1ZXI C;  3PQB A;  5I1W A;  1ZR6 A;  3W8Z A;  2RK5 A;  1N5W C;  5AE3 A;  4EC3 A;  3NVZ B;  1W1S A;  1F0X A;  5FXF A;  3TSH A;  3EUB 3;  2Q4W A;  2W55 A;  1AHZ A;  1W1J A;  1HSK A;  1N62 C;  1W1L A;  3JS8 A;  4XLO A;  5ADZ A;  1N60 C;  3AM9 A;  1MBT A;  3B9J B;  1I19 A;  3NRZ B;  4O95 A;  3FW8 A;  3NVV B;  2W3S A;  2UUV A;  3LAE A;  4PYT A;  3S1C A;  2GQU A;  4OAL A;  3C0P A;  4ZOH B;  1N5X A;  3DQ0 A;  3D2J A;  4BC7 A;  1T3Q C;  2BVH A;  2Y4G A;  5HQX A;  3TX1 A;  2Y3S A;  2QPM A;  1E0Y A;  2Q85 A;  4PWC A;  3AN1 A;  4BCA A;  2VFR A;  1W1Q A;  1RM6 B;  4PZF A;  3DED A;  3NS1 B;  1N63 C;  2VFT A;  4UD8 A;  5L6G A;  5FXP A;  2PLS A;  2MBR A;  2Y08 A;  1JRP A;  1FO4 A;  1DZN A;  3VTE A;  1SB3 B;  2Y3R A;  2W3R A;  5HHZ A;  3I99 A;  1WYG A;  1AHU A;  4PVE A;  3TSJ A;  4PWB A;  1E8G A;  3NVW B;  1QLU A;  3S1F A;  3AMZ A;  1UXY A;  4BBY A;  4BC9 A;  2BVG A;  3HRD C;  5I1V A;  5HMR A;  2E3T A;  2NQW A;  5G5H B;  2R2Z A;  2VFS A;  2YVS A;  1W1M A;  1W1K A;  2OAI A;  2P4P A;  5AWV A;  2PLI A;  5G5G B;  3SR6 B;  2VFV A;  2W54 A;  3HSU A;  3KJM A;  4ML8 A;  1W1R A;  4PVH A;  4JAY A;  4DNS A;  1DII A;  3S1D A;  5AE1 A;  1N61 C;  3FW9 A;  1E8F A;  1MBB A;  3FWA A;  3POP A;  2BVF A;  3RJA A;  2VAO A;  3W8X A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...