3FW7A

Structure of berberine bridge enzyme, h104a variant
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
498
structure length
498
Chain Sequence
AGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
total genus 173
structure length 498
sequence length 498
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw7A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw7A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw7A03
3D2HA 1FIQB 1E8GA 5L6FA 5AWVA 2VFTA 1N5XA 1DIIA 3S1DA 3S1CA 1JROA 1I19A 3B9JB 1AHZA 1F0XA 3S1FA 3NRZB 1MBTA 4PVJA 1W1QA 2W3RA 1HSKA 3TSJA 2AXRA 1WYGA 3BW7A 1MBBA 1QLUA 3NVZB 4BCAA 3FW7A 1FFVC 2Q85A 5FXEA 5K8EA 4XLOA 1FO4A 5D79A 3W8ZA 3I99A 3AN1A 4BBYA 3FWAA 3D2JA 1N62C 1VDVA 3S1EA 2Y3SA 1ZXIC 4ZOHB 4O95A 3NS1B 5HHZA 1QLTA 1W1KA 5I1VA 4UD8A 1VAOA 4JAYA 3PQBA 4BC7A 1AHVA 3C0PA 2Y3RA 2QKNA 2WDWA 2GQTA 5FXPA 1E8FA 3ETRB 3RJAA 1W1MA 3EUB3 5HMRA 4DNSA 3VTEA 4PWBA 2W54A 2MBRA 2QPMA 1FFUC 2BVHA 4BC9A 2EXRA 1WVEA 3FW9A 1E8HA 5HQXA 3AM9A 3RJ8A 2VFUA 2Y4GA 5FXFA 3W8XA 1UXYA 3JS8A 4PYTA 3DQ0A 2Q4WA 3AMZA 3W8WA 5FXDA 3GSYA 2BVFA 3FW8A 2I0KA 4PVKA 4EC3A 1W1OA 1N61C 1T3QC 1W1SA 1ZR6A 4PWCA 2IPIA 4JB1A 3POPA 3HSUA 4OALA 3TSHA 2GQUA 5AE1A 4MLAA 5L6GA 2W3SA 2W55A 5I1WA 1AHUA 1N63C 3PM9A 2Y08A 4PZFA 4PVEA 1DZNA 1N5WC 1WVFA 4PVHA 1W1JA 2VFSA 5AE2A 3KJMA 3TX1A 2BVGA 1W1RA 1W1LA 3D2DA 2E3TA 2VFVA 3SR6B 5ADZA 1E0YA 1DIQA 1N60C 2VAOA 4ML8A 2VFRA 5AE3A 1V97A
chains in the Genus database with same CATH superfamily
3D2HA 5G5HB 1FIQB 1RM6B 1E8GA 2OAIA 5L6FA 5AWVA 2VFTA 1N5XA 1DIIA 3S1DA 3S1CA 4HG0A 1JROA 3EJEB 1I19A 3B9JB 1AHZA 1F0XA 3S1FA 2P13A 3NRZB 3EJDB 1MBTA 4PVJA 1W1QA 2W3RA 1HSKA 3TSJA 2AXRA 1WYGA 2PLSA 3BW7A 1MBBA 1QLUA 3NVZB 4BCAA 2P4PA 3FW7A 1FFVC 1JRPA 2Q85A 5FXEA 5K8EA 4XLOA 2R8DA 2RK5A 1FO4A 5D79A 3W8ZA 3I99A 3AN1A 4BBYA 3FWAA 3D2JA 3HRDC 2YVSA 1N62C 1VDVA 3S1EA 2Y3SA 1ZXIC 5G5GB 4ZOHB 4O95A 3NS1B 5HHZA 1QLTA 1W1KA 5I1VA 4UD8A 1VAOA 4JAYA 3PQBA 4BC7A 1AHVA 3C0PA 2Y3RA 2QKNA 2WDWA 2GQTA 2NQWA 5FXPA 1E8FA 3ETRB 3LLBA 3RJAA 1W1MA 3EUB3 5HMRA 4DNSA 3VTEA 2UUVA 4PWBA 2R2ZA 2W54A 2MBRA 2QPMA 1FFUC 2BVHA 4BC9A 2EXRA 1WVEA 3FW9A 1E8HA 5HQXA 2O3GA 3AM9A 3RJ8A 2VFUA 2Y4GA 5FXFA 3W8XA 1UXYA 3JS8A 4PYTA 3DQ0A 2Q4WA 3NVVB 3EJBB 3AMZA 3W8WA 5FXDA 3GSYA 2BVFA 3FW8A 2PLIA 2I0KA 4PVKA 4EC3A 1W1OA 1N61C 1T3QC 1W1SA 1ZR6A 4PWCA 2IPIA 3NVYB 4JB1A 3POPA 3HSUA 4OALA 3TSHA 2GQUA 5AE1A 4MLAA 5L6GA 2W3SA 2W55A 3NVWB 5I1WA 3DEDA 1AHUA 3LAEA 1N63C 3PM9A 2Y08A 4PZFA 4PVEA 1DZNA 1N5WC 1WVFA 4PVHA 1W1JA 2VFSA 5AE2A 3KJMA 3TX1A 2BVGA 1W1RA 1W1LA 2UUUA 3D2DA 2E3TA 2VFVA 3SR6B 5ADZA 1E0YA 1DIQA 1N60C 2VAOA 4ML8A 2VFRA 2P3HA 5AE3A 1SB3B 1V97A
chains in the Genus database with same CATH topology
3D2HA 5G5HB 1FIQB 1RM6B 1E8GA 2OAIA 5L6FA 5AWVA 2VFTA 1N5XA 1DIIA 3S1DA 3S1CA 4HG0A 1JROA 1I19A 3B9JB 1AHZA 1F0XA 3S1FA 2P13A 3NRZB 1MBTA 4PVJA 1W1QA 2W3RA 1HSKA 3TSJA 2AXRA 1WYGA 2PLSA 3BW7A 1MBBA 1QLUA 3NVZB 4BCAA 2P4PA 3FW7A 1FFVC 1JRPA 2Q85A 5FXEA 5K8EA 4XLOA 2R8DA 2RK5A 1FO4A 5D79A 3W8ZA 3I99A 3AN1A 4BBYA 3FWAA 3D2JA 3HRDC 2YVSA 1N62C 1VDVA 3S1EA 2Y3SA 1ZXIC 5G5GB 4ZOHB 4O95A 3NS1B 5HHZA 1QLTA 1W1KA 5I1VA 4UD8A 1VAOA 4JAYA 3PQBA 4BC7A 1AHVA 3C0PA 2Y3RA 2QKNA 2WDWA 2GQTA 2NQWA 5FXPA 1E8FA 3ETRB 3LLBA 3RJAA 1W1MA 3EUB3 5HMRA 4DNSA 3VTEA 2UUVA 4PWBA 2R2ZA 2W54A 2MBRA 2QPMA 1FFUC 2BVHA 4BC9A 2EXRA 1WVEA 3FW9A 1E8HA 5HQXA 2O3GA 3AM9A 3RJ8A 2VFUA 2Y4GA 5FXFA 3W8XA 1UXYA 3JS8A 4PYTA 3DQ0A 2Q4WA 3NVVB 3AMZA 3W8WA 5FXDA 3GSYA 2BVFA 3FW8A 2PLIA 2I0KA 4PVKA 4EC3A 1W1OA 1N61C 1T3QC 1W1SA 1ZR6A 4PWCA 2IPIA 3NVYB 4JB1A 3POPA 3HSUA 4OALA 3TSHA 2GQUA 5AE1A 4MLAA 5L6GA 2W3SA 2W55A 3NVWB 5I1WA 3DEDA 1AHUA 3LAEA 1N63C 3PM9A 2Y08A 4PZFA 4PVEA 1DZNA 1N5WC 1WVFA 4PVHA 1W1JA 2VFSA 5AE2A 3KJMA 3TX1A 2BVGA 1W1RA 1W1LA 2UUUA 3D2DA 2E3TA 2VFVA 3SR6B 5ADZA 1E0YA 1DIQA 1N60C 2VAOA 4ML8A 2VFRA 2P3HA 5AE3A 1SB3B 1V97A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2H A;  1FIQ B;  1E8G A;  5L6F A;  5AWV A;  2VFT A;  1N5X A;  1DII A;  3S1D A;  3S1C A;  1JRO A;  1I19 A;  3B9J B;  1AHZ A;  1F0X A;  3S1F A;  3NRZ B;  1MBT A;  4PVJ A;  1W1Q A;  2W3R A;  1HSK A;  3TSJ A;  2AXR A;  1WYG A;  3BW7 A;  1MBB A;  1QLU A;  3NVZ B;  4BCA A;  3FW7 A;  1FFV C;  2Q85 A;  5FXE A;  5K8E A;  4XLO A;  1FO4 A;  5D79 A;  3W8Z A;  3I99 A;  3AN1 A;  4BBY A;  3FWA A;  3D2J A;  1N62 C;  1VDV A;  3S1E A;  2Y3S A;  1ZXI C;  4ZOH B;  4O95 A;  3NS1 B;  5HHZ A;  1QLT A;  1W1K A;  5I1V A;  4UD8 A;  1VAO A;  4JAY A;  3PQB A;  4BC7 A;  1AHV A;  3C0P A;  2Y3R A;  2QKN A;  2WDW A;  2GQT A;  5FXP A;  1E8F A;  3ETR B;  3RJA A;  1W1M A;  3EUB 3;  5HMR A;  4DNS A;  3VTE A;  4PWB A;  2W54 A;  2MBR A;  2QPM A;  1FFU C;  2BVH A;  4BC9 A;  2EXR A;  1WVE A;  3FW9 A;  1E8H A;  5HQX A;  3AM9 A;  3RJ8 A;  2VFU A;  2Y4G A;  5FXF A;  3W8X A;  1UXY A;  3JS8 A;  4PYT A;  3DQ0 A;  2Q4W A;  3AMZ A;  3W8W A;  5FXD A;  3GSY A;  2BVF A;  3FW8 A;  2I0K A;  4PVK A;  4EC3 A;  1W1O A;  1N61 C;  1T3Q C;  1W1S A;  1ZR6 A;  4PWC A;  2IPI A;  4JB1 A;  3POP A;  3HSU A;  4OAL A;  3TSH A;  2GQU A;  5AE1 A;  4MLA A;  5L6G A;  2W3S A;  2W55 A;  5I1W A;  1AHU A;  1N63 C;  3PM9 A;  2Y08 A;  4PZF A;  4PVE A;  1DZN A;  1N5W C;  1WVF A;  4PVH A;  1W1J A;  2VFS A;  5AE2 A;  3KJM A;  3TX1 A;  2BVG A;  1W1R A;  1W1L A;  3D2D A;  2E3T A;  2VFV A;  3SR6 B;  5ADZ A;  1E0Y A;  1DIQ A;  1N60 C;  2VAO A;  4ML8 A;  2VFR A;  5AE3 A;  1V97 A; 
#chains in the Genus database with same CATH topology
 3D2H A;  5G5H B;  1FIQ B;  1RM6 B;  1E8G A;  2OAI A;  5L6F A;  5AWV A;  2VFT A;  1N5X A;  1DII A;  3S1D A;  3S1C A;  4HG0 A;  1JRO A;  3EJE B;  1I19 A;  3B9J B;  1AHZ A;  1F0X A;  3S1F A;  2P13 A;  3NRZ B;  3EJD B;  1MBT A;  4PVJ A;  1W1Q A;  2W3R A;  1HSK A;  3TSJ A;  2AXR A;  1WYG A;  2PLS A;  3BW7 A;  1MBB A;  1QLU A;  3NVZ B;  4BCA A;  2P4P A;  3FW7 A;  1FFV C;  1JRP A;  2Q85 A;  5FXE A;  5K8E A;  4XLO A;  2R8D A;  2RK5 A;  1FO4 A;  5D79 A;  3W8Z A;  3I99 A;  3AN1 A;  4BBY A;  3FWA A;  3D2J A;  3HRD C;  2YVS A;  1N62 C;  1VDV A;  3S1E A;  2Y3S A;  1ZXI C;  5G5G B;  4ZOH B;  4O95 A;  3NS1 B;  5HHZ A;  1QLT A;  1W1K A;  5I1V A;  4UD8 A;  1VAO A;  4JAY A;  3PQB A;  4BC7 A;  1AHV A;  3C0P A;  2Y3R A;  2QKN A;  2WDW A;  2GQT A;  2NQW A;  5FXP A;  1E8F A;  3ETR B;  3LLB A;  3RJA A;  1W1M A;  3EUB 3;  5HMR A;  4DNS A;  3VTE A;  2UUV A;  4PWB A;  2R2Z A;  2W54 A;  2MBR A;  2QPM A;  1FFU C;  2BVH A;  4BC9 A;  2EXR A;  1WVE A;  3FW9 A;  1E8H A;  5HQX A;  2O3G A;  3AM9 A;  3RJ8 A;  2VFU A;  2Y4G A;  5FXF A;  3W8X A;  1UXY A;  3JS8 A;  4PYT A;  3DQ0 A;  2Q4W A;  3NVV B;  3EJB B;  3AMZ A;  3W8W A;  5FXD A;  3GSY A;  2BVF A;  3FW8 A;  2PLI A;  2I0K A;  4PVK A;  4EC3 A;  1W1O A;  1N61 C;  1T3Q C;  1W1S A;  1ZR6 A;  4PWC A;  2IPI A;  3NVY B;  4JB1 A;  3POP A;  3HSU A;  4OAL A;  3TSH A;  2GQU A;  5AE1 A;  4MLA A;  5L6G A;  2W3S A;  2W55 A;  3NVW B;  5I1W A;  3DED A;  1AHU A;  3LAE A;  1N63 C;  3PM9 A;  2Y08 A;  4PZF A;  4PVE A;  1DZN A;  1N5W C;  1WVF A;  4PVH A;  1W1J A;  2VFS A;  5AE2 A;  3KJM A;  3TX1 A;  2BVG A;  1W1R A;  1W1L A;  2UUU A;  3D2D A;  2E3T A;  2VFV A;  3SR6 B;  5ADZ A;  1E0Y A;  1DIQ A;  1N60 C;  2VAO A;  4ML8 A;  2VFR A;  2P3H A;  5AE3 A;  1SB3 B;  1V97 A; 
#chains in the Genus database with same CATH homology
 3D2H A;  5G5H B;  1FIQ B;  1RM6 B;  1E8G A;  2OAI A;  5L6F A;  5AWV A;  2VFT A;  1N5X A;  1DII A;  3S1D A;  3S1C A;  4HG0 A;  1JRO A;  1I19 A;  3B9J B;  1AHZ A;  1F0X A;  3S1F A;  2P13 A;  3NRZ B;  1MBT A;  4PVJ A;  1W1Q A;  2W3R A;  1HSK A;  3TSJ A;  2AXR A;  1WYG A;  2PLS A;  3BW7 A;  1MBB A;  1QLU A;  3NVZ B;  4BCA A;  2P4P A;  3FW7 A;  1FFV C;  1JRP A;  2Q85 A;  5FXE A;  5K8E A;  4XLO A;  2R8D A;  2RK5 A;  1FO4 A;  5D79 A;  3W8Z A;  3I99 A;  3AN1 A;  4BBY A;  3FWA A;  3D2J A;  3HRD C;  2YVS A;  1N62 C;  1VDV A;  3S1E A;  2Y3S A;  1ZXI C;  5G5G B;  4ZOH B;  4O95 A;  3NS1 B;  5HHZ A;  1QLT A;  1W1K A;  5I1V A;  4UD8 A;  1VAO A;  4JAY A;  3PQB A;  4BC7 A;  1AHV A;  3C0P A;  2Y3R A;  2QKN A;  2WDW A;  2GQT A;  2NQW A;  5FXP A;  1E8F A;  3ETR B;  3LLB A;  3RJA A;  1W1M A;  3EUB 3;  5HMR A;  4DNS A;  3VTE A;  2UUV A;  4PWB A;  2R2Z A;  2W54 A;  2MBR A;  2QPM A;  1FFU C;  2BVH A;  4BC9 A;  2EXR A;  1WVE A;  3FW9 A;  1E8H A;  5HQX A;  2O3G A;  3AM9 A;  3RJ8 A;  2VFU A;  2Y4G A;  5FXF A;  3W8X A;  1UXY A;  3JS8 A;  4PYT A;  3DQ0 A;  2Q4W A;  3NVV B;  3AMZ A;  3W8W A;  5FXD A;  3GSY A;  2BVF A;  3FW8 A;  2PLI A;  2I0K A;  4PVK A;  4EC3 A;  1W1O A;  1N61 C;  1T3Q C;  1W1S A;  1ZR6 A;  4PWC A;  2IPI A;  3NVY B;  4JB1 A;  3POP A;  3HSU A;  4OAL A;  3TSH A;  2GQU A;  5AE1 A;  4MLA A;  5L6G A;  2W3S A;  2W55 A;  3NVW B;  5I1W A;  3DED A;  1AHU A;  3LAE A;  1N63 C;  3PM9 A;  2Y08 A;  4PZF A;  4PVE A;  1DZN A;  1N5W C;  1WVF A;  4PVH A;  1W1J A;  2VFS A;  5AE2 A;  3KJM A;  3TX1 A;  2BVG A;  1W1R A;  1W1L A;  2UUU A;  3D2D A;  2E3T A;  2VFV A;  3SR6 B;  5ADZ A;  1E0Y A;  1DIQ A;  1N60 C;  2VAO A;  4ML8 A;  2VFR A;  2P3H A;  5AE3 A;  1SB3 B;  1V97 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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