3FW7A

Structure of berberine bridge enzyme, h104a variant
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
498
structure length
498
Chain Sequence
b'AGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
total genus 173
structure length 498
sequence length 498
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw7A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw7A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw7A03
3RJ8A 4BC7A 3ETRB 1WYGA 1JROA 2BVHA 1W1RA 3AN1A 2VFTA 4DNSA 1DIIA 1W1JA 1N60C 2BVFA 3EUB3 5FXEA 2Q4WA 3W8XA 5AE3A 3JS8A 1FFVC 2QKNA 5AWVA 2VFSA 3D2JA 4PYTA 3TX1A 3HSUA 3B9JB 5I1WA 2EXRA 1W1LA 1E8FA 3FW7A 2Y3SA 3TSHA 1W1SA 3D2HA 4JB1A 1W1QA 3RJAA 4ML8A 2W3RA 2IPIA 2MBRA 1T3QC 2Y08A 3DQ0A 2BVGA 4EC3A 3S1CA 2VFRA 4PVKA 3PM9A 3NVZB 3FW8A 3TSJA 2GQUA 1N61C 1FFUC 2WDWA 5FXPA 5HQXA 2W3SA 4PVEA 1FIQB 1ZR6A 3BW7A 2VAOA 1W1MA 2Q85A 2E3TA 4JAYA 5FXFA 5ADZA 1DIQA 1MBBA 1WVFA 3S1EA 1N63C 1N62C 3NRZB 5AE2A 4BC9A 3NS1B 4BCAA 3POPA 2Y4GA 3KJMA 1V97A 2VFVA 2QPMA 3SR6B 4PZFA 4ZOHB 2Y3RA 1HSKA 3AM9A 5HMRA 5FXDA 3VTEA 1F0XA 1ZXIC 1MBTA 1W1KA 3S1DA 3FWAA 4UD8A 1FO4A 5HHZA 1E8GA 4PVHA 4PVJA 1N5WC 2W54A 4BBYA 3GSYA 3W8WA 3I99A 4MLAA 3FW9A 1N5XA 4PWBA 1WVEA 3PQBA 1I19A 5D79A 1VAOA 1AHUA 5AE1A 1AHZA 2I0KA 2AXRA 1E0YA 4XLOA 5L6FA 5L6GA 5K8EA 2VFUA 4PWCA 4OALA 3AMZA 5I1VA 1QLUA 1QLTA 1UXYA 2GQTA 3W8ZA 1VDVA 1DZNA 3S1FA 4O95A 2W55A 1AHVA 1W1OA 1E8HA 3D2DA 3C0PA
chains in the Genus database with same CATH superfamily
3RJ8A 4BC7A 2R2ZA 3EJBB 3ETRB 1WYGA 2NQWA 1JROA 5G5HB 2BVHA 1W1RA 3AN1A 2P4PA 2VFTA 4DNSA 1DIIA 1W1JA 1N60C 2O3GA 2BVFA 3EUB3 5FXEA 2Q4WA 3W8XA 5AE3A 2PLSA 3JS8A 1FFVC 2QKNA 5AWVA 3EJEB 2OAIA 2VFSA 3D2JA 3LAEA 4PYTA 3TX1A 3HSUA 3B9JB 3NVVB 2EXRA 5I1WA 1W1LA 1E8FA 3FW7A 2Y3SA 3LLBA 3TSHA 1W1SA 3D2HA 4JB1A 1W1QA 3RJAA 4ML8A 2W3RA 2IPIA 2MBRA 1T3QC 2Y08A 3DQ0A 2BVGA 4EC3A 3S1CA 2VFRA 4PVKA 3PM9A 3NVZB 3FW8A 3NVYB 3TSJA 2GQUA 1N61C 1FFUC 4HG0A 2WDWA 5FXPA 5HQXA 2W3SA 4PVEA 1FIQB 1ZR6A 3BW7A 2VAOA 3NVWB 1W1MA 2Q85A 2E3TA 4JAYA 3DEDA 5FXFA 5ADZA 1DIQA 1MBBA 1WVFA 3S1EA 2R8DA 1N63C 1N62C 3NRZB 5AE2A 4BC9A 3NS1B 4BCAA 3POPA 2Y4GA 3KJMA 2YVSA 1V97A 2VFVA 2QPMA 3SR6B 4PZFA 4ZOHB 1SB3B 2Y3RA 1HSKA 3AM9A 5HMRA 5FXDA 3VTEA 1F0XA 1ZXIC 1MBTA 1W1KA 3S1DA 2RK5A 3FWAA 4UD8A 1FO4A 3EJDB 5HHZA 1E8GA 4PVHA 4PVJA 1N5WC 2W54A 4BBYA 3GSYA 2P3HA 1RM6B 1JRPA 3W8WA 2UUVA 3HRDC 3I99A 4MLAA 3FW9A 1N5XA 4PWBA 1WVEA 3PQBA 1I19A 5D79A 1VAOA 1AHUA 5AE1A 1AHZA 2I0KA 2AXRA 2P13A 1E0YA 4XLOA 5L6FA 5L6GA 5K8EA 2VFUA 4PWCA 4OALA 3AMZA 5I1VA 1QLUA 2PLIA 1QLTA 1UXYA 2GQTA 3W8ZA 1VDVA 1DZNA 5G5GB 3S1FA 4O95A 2W55A 1AHVA 1W1OA 1E8HA 2UUUA 3D2DA 3C0PA
chains in the Genus database with same CATH topology
3RJ8A 4BC7A 2R2ZA 3ETRB 1WYGA 2NQWA 1JROA 5G5HB 2BVHA 1W1RA 3AN1A 2P4PA 2VFTA 4DNSA 1DIIA 1W1JA 1N60C 2O3GA 2BVFA 3EUB3 5FXEA 2Q4WA 3W8XA 5AE3A 2PLSA 3JS8A 1FFVC 2QKNA 5AWVA 2OAIA 2VFSA 3D2JA 3LAEA 4PYTA 3TX1A 3HSUA 3B9JB 3NVVB 2EXRA 5I1WA 1W1LA 1E8FA 3FW7A 2Y3SA 3LLBA 3TSHA 1W1SA 3D2HA 4JB1A 1W1QA 3RJAA 4ML8A 2W3RA 2IPIA 2MBRA 1T3QC 2Y08A 3DQ0A 2BVGA 4EC3A 3S1CA 2VFRA 4PVKA 3PM9A 3NVZB 3FW8A 3NVYB 3TSJA 2GQUA 1N61C 1FFUC 4HG0A 2WDWA 5FXPA 5HQXA 2W3SA 4PVEA 1FIQB 1ZR6A 3BW7A 2VAOA 3NVWB 1W1MA 2Q85A 2E3TA 4JAYA 3DEDA 5FXFA 5ADZA 1DIQA 1MBBA 1WVFA 3S1EA 2R8DA 1N63C 1N62C 3NRZB 5AE2A 4BC9A 3NS1B 4BCAA 3POPA 2Y4GA 3KJMA 2YVSA 1V97A 2VFVA 2QPMA 3SR6B 4PZFA 4ZOHB 1SB3B 2Y3RA 1HSKA 3AM9A 5HMRA 5FXDA 3VTEA 1F0XA 1ZXIC 1MBTA 1W1KA 3S1DA 2RK5A 3FWAA 4UD8A 1FO4A 5HHZA 1E8GA 4PVHA 4PVJA 1N5WC 2W54A 4BBYA 3GSYA 2P3HA 1RM6B 1JRPA 3W8WA 2UUVA 3HRDC 3I99A 4MLAA 3FW9A 1N5XA 4PWBA 1WVEA 3PQBA 1I19A 5D79A 1VAOA 1AHUA 5AE1A 1AHZA 2I0KA 2AXRA 2P13A 1E0YA 4XLOA 5L6FA 5L6GA 5K8EA 2VFUA 4PWCA 4OALA 3AMZA 5I1VA 1QLUA 2PLIA 1QLTA 1UXYA 2GQTA 3W8ZA 1VDVA 1DZNA 5G5GB 3S1FA 4O95A 2W55A 1AHVA 1W1OA 1E8HA 2UUUA 3D2DA 3C0PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJ8 A;  4BC7 A;  3ETR B;  1WYG A;  1JRO A;  2BVH A;  1W1R A;  3AN1 A;  2VFT A;  4DNS A;  1DII A;  1W1J A;  1N60 C;  2BVF A;  3EUB 3;  5FXE A;  2Q4W A;  3W8X A;  5AE3 A;  3JS8 A;  1FFV C;  2QKN A;  5AWV A;  2VFS A;  3D2J A;  4PYT A;  3TX1 A;  3HSU A;  3B9J B;  5I1W A;  2EXR A;  1W1L A;  1E8F A;  3FW7 A;  2Y3S A;  3TSH A;  1W1S A;  3D2H A;  4JB1 A;  1W1Q A;  3RJA A;  4ML8 A;  2W3R A;  2IPI A;  2MBR A;  1T3Q C;  2Y08 A;  3DQ0 A;  2BVG A;  4EC3 A;  3S1C A;  2VFR A;  4PVK A;  3PM9 A;  3NVZ B;  3FW8 A;  3TSJ A;  2GQU A;  1N61 C;  1FFU C;  2WDW A;  5FXP A;  5HQX A;  2W3S A;  4PVE A;  1FIQ B;  1ZR6 A;  3BW7 A;  2VAO A;  1W1M A;  2Q85 A;  2E3T A;  4JAY A;  5FXF A;  5ADZ A;  1DIQ A;  1MBB A;  1WVF A;  3S1E A;  1N63 C;  1N62 C;  3NRZ B;  5AE2 A;  4BC9 A;  3NS1 B;  4BCA A;  3POP A;  2Y4G A;  3KJM A;  1V97 A;  2VFV A;  2QPM A;  3SR6 B;  4PZF A;  4ZOH B;  2Y3R A;  1HSK A;  3AM9 A;  5HMR A;  5FXD A;  3VTE A;  1F0X A;  1ZXI C;  1MBT A;  1W1K A;  3S1D A;  3FWA A;  4UD8 A;  1FO4 A;  5HHZ A;  1E8G A;  4PVH A;  4PVJ A;  1N5W C;  2W54 A;  4BBY A;  3GSY A;  3W8W A;  3I99 A;  4MLA A;  3FW9 A;  1N5X A;  4PWB A;  1WVE A;  3PQB A;  1I19 A;  5D79 A;  1VAO A;  1AHU A;  5AE1 A;  1AHZ A;  2I0K A;  2AXR A;  1E0Y A;  4XLO A;  5L6F A;  5L6G A;  5K8E A;  2VFU A;  4PWC A;  4OAL A;  3AMZ A;  5I1V A;  1QLU A;  1QLT A;  1UXY A;  2GQT A;  3W8Z A;  1VDV A;  1DZN A;  3S1F A;  4O95 A;  2W55 A;  1AHV A;  1W1O A;  1E8H A;  3D2D A;  3C0P A; 
#chains in the Genus database with same CATH topology
 3RJ8 A;  4BC7 A;  2R2Z A;  3EJB B;  3ETR B;  1WYG A;  2NQW A;  1JRO A;  5G5H B;  2BVH A;  1W1R A;  3AN1 A;  2P4P A;  2VFT A;  4DNS A;  1DII A;  1W1J A;  1N60 C;  2O3G A;  2BVF A;  3EUB 3;  5FXE A;  2Q4W A;  3W8X A;  5AE3 A;  2PLS A;  3JS8 A;  1FFV C;  2QKN A;  5AWV A;  3EJE B;  2OAI A;  2VFS A;  3D2J A;  3LAE A;  4PYT A;  3TX1 A;  3HSU A;  3B9J B;  3NVV B;  2EXR A;  5I1W A;  1W1L A;  1E8F A;  3FW7 A;  2Y3S A;  3LLB A;  3TSH A;  1W1S A;  3D2H A;  4JB1 A;  1W1Q A;  3RJA A;  4ML8 A;  2W3R A;  2IPI A;  2MBR A;  1T3Q C;  2Y08 A;  3DQ0 A;  2BVG A;  4EC3 A;  3S1C A;  2VFR A;  4PVK A;  3PM9 A;  3NVZ B;  3FW8 A;  3NVY B;  3TSJ A;  2GQU A;  1N61 C;  1FFU C;  4HG0 A;  2WDW A;  5FXP A;  5HQX A;  2W3S A;  4PVE A;  1FIQ B;  1ZR6 A;  3BW7 A;  2VAO A;  3NVW B;  1W1M A;  2Q85 A;  2E3T A;  4JAY A;  3DED A;  5FXF A;  5ADZ A;  1DIQ A;  1MBB A;  1WVF A;  3S1E A;  2R8D A;  1N63 C;  1N62 C;  3NRZ B;  5AE2 A;  4BC9 A;  3NS1 B;  4BCA A;  3POP A;  2Y4G A;  3KJM A;  2YVS A;  1V97 A;  2VFV A;  2QPM A;  3SR6 B;  4PZF A;  4ZOH B;  1SB3 B;  2Y3R A;  1HSK A;  3AM9 A;  5HMR A;  5FXD A;  3VTE A;  1F0X A;  1ZXI C;  1MBT A;  1W1K A;  3S1D A;  2RK5 A;  3FWA A;  4UD8 A;  1FO4 A;  3EJD B;  5HHZ A;  1E8G A;  4PVH A;  4PVJ A;  1N5W C;  2W54 A;  4BBY A;  3GSY A;  2P3H A;  1RM6 B;  1JRP A;  3W8W A;  2UUV A;  3HRD C;  3I99 A;  4MLA A;  3FW9 A;  1N5X A;  4PWB A;  1WVE A;  3PQB A;  1I19 A;  5D79 A;  1VAO A;  1AHU A;  5AE1 A;  1AHZ A;  2I0K A;  2AXR A;  2P13 A;  1E0Y A;  4XLO A;  5L6F A;  5L6G A;  5K8E A;  2VFU A;  4PWC A;  4OAL A;  3AMZ A;  5I1V A;  1QLU A;  2PLI A;  1QLT A;  1UXY A;  2GQT A;  3W8Z A;  1VDV A;  1DZN A;  5G5G B;  3S1F A;  4O95 A;  2W55 A;  1AHV A;  1W1O A;  1E8H A;  2UUU A;  3D2D A;  3C0P A; 
#chains in the Genus database with same CATH homology
 3RJ8 A;  4BC7 A;  2R2Z A;  3ETR B;  1WYG A;  2NQW A;  1JRO A;  5G5H B;  2BVH A;  1W1R A;  3AN1 A;  2P4P A;  2VFT A;  4DNS A;  1DII A;  1W1J A;  1N60 C;  2O3G A;  2BVF A;  3EUB 3;  5FXE A;  2Q4W A;  3W8X A;  5AE3 A;  2PLS A;  3JS8 A;  1FFV C;  2QKN A;  5AWV A;  2OAI A;  2VFS A;  3D2J A;  3LAE A;  4PYT A;  3TX1 A;  3HSU A;  3B9J B;  3NVV B;  2EXR A;  5I1W A;  1W1L A;  1E8F A;  3FW7 A;  2Y3S A;  3LLB A;  3TSH A;  1W1S A;  3D2H A;  4JB1 A;  1W1Q A;  3RJA A;  4ML8 A;  2W3R A;  2IPI A;  2MBR A;  1T3Q C;  2Y08 A;  3DQ0 A;  2BVG A;  4EC3 A;  3S1C A;  2VFR A;  4PVK A;  3PM9 A;  3NVZ B;  3FW8 A;  3NVY B;  3TSJ A;  2GQU A;  1N61 C;  1FFU C;  4HG0 A;  2WDW A;  5FXP A;  5HQX A;  2W3S A;  4PVE A;  1FIQ B;  1ZR6 A;  3BW7 A;  2VAO A;  3NVW B;  1W1M A;  2Q85 A;  2E3T A;  4JAY A;  3DED A;  5FXF A;  5ADZ A;  1DIQ A;  1MBB A;  1WVF A;  3S1E A;  2R8D A;  1N63 C;  1N62 C;  3NRZ B;  5AE2 A;  4BC9 A;  3NS1 B;  4BCA A;  3POP A;  2Y4G A;  3KJM A;  2YVS A;  1V97 A;  2VFV A;  2QPM A;  3SR6 B;  4PZF A;  4ZOH B;  1SB3 B;  2Y3R A;  1HSK A;  3AM9 A;  5HMR A;  5FXD A;  3VTE A;  1F0X A;  1ZXI C;  1MBT A;  1W1K A;  3S1D A;  2RK5 A;  3FWA A;  4UD8 A;  1FO4 A;  5HHZ A;  1E8G A;  4PVH A;  4PVJ A;  1N5W C;  2W54 A;  4BBY A;  3GSY A;  2P3H A;  1RM6 B;  1JRP A;  3W8W A;  2UUV A;  3HRD C;  3I99 A;  4MLA A;  3FW9 A;  1N5X A;  4PWB A;  1WVE A;  3PQB A;  1I19 A;  5D79 A;  1VAO A;  1AHU A;  5AE1 A;  1AHZ A;  2I0K A;  2AXR A;  2P13 A;  1E0Y A;  4XLO A;  5L6F A;  5L6G A;  5K8E A;  2VFU A;  4PWC A;  4OAL A;  3AMZ A;  5I1V A;  1QLU A;  2PLI A;  1QLT A;  1UXY A;  2GQT A;  3W8Z A;  1VDV A;  1DZN A;  5G5G B;  3S1F A;  4O95 A;  2W55 A;  1AHV A;  1W1O A;  1E8H A;  2UUU A;  3D2D A;  3C0P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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