3FW7A

Structure of berberine bridge enzyme, h104a variant
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
498
structure length
498
Chain Sequence
AGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
molecule keywords Reticuline oxidase
total genus 173
structure length 498
sequence length 498
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw7A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw7A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw7A03
3W8XA 1ZR6A 2Y08A 4PVEA 5I1VA 1V97A 3W8WA 3ETRB 2MBRA 5D79A 3RJ8A 3SR6B 1W1OA 3S1FA 2AXRA 1N62C 5K8EA 1N60C 2VFTA 4ZOHB 1FO4A 2I0KA 3S1DA 3S1CA 1E8FA 5HQXA 3FWAA 1DIIA 1W1JA 3I99A 2VFUA 4OALA 1QLTA 1I19A 1E0YA 2Y3RA 5AE3A 3HSUA 1ZXIC 4PYTA 3NVZB 2QPMA 4MLAA 1AHVA 3VTEA 3PQBA 1MBTA 1W1KA 1DZNA 3AM9A 1QLUA 4BC9A 1FIQB 2VFSA 2VFRA 1W1RA 4ML8A 1UXYA 2GQUA 1F0XA 1FFVC 2VFVA 1WYGA 3D2JA 3KJMA 3TSHA 3FW8A 1VAOA 2VAOA 3D2HA 4PVJA 3POPA 2BVHA 3DQ0A 3TX1A 3JS8A 3GSYA 3PM9A 3TSJA 2EXRA 3D2DA 2BVGA 1JROA 1VDVA 4JB1A 3NS1B 2Q4WA 4PVKA 4PWBA 4UD8A 1W1LA 3C0PA 5FXEA 5FXPA 1HSKA 1N63C 5AE2A 3BW7A 1T3QC 4PZFA 3FW7A 3W8ZA 5ADZA 2Y4GA 5AWVA 1W1SA 2QKNA 5L6FA 2Y3SA 1W1QA 2Q85A 1N5WC 3S1EA 4EC3A 5HMRA 3EUB3 1N5XA 1WVEA 2IPIA 3AMZA 5FXFA 2W55A 1WVFA 2W3SA 4BC7A 1N61C 2GQTA 5L6GA 4DNSA 5FXDA 2BVFA 2W54A 4BCAA 1DIQA 4PWCA 1AHUA 3B9JB 4O95A 4BBYA 4PVHA 1E8GA 1W1MA 3NRZB 2WDWA 4JAYA 1E8HA 1FFUC 5I1WA 3FW9A 2E3TA 5AE1A 4XLOA 2W3RA 3AN1A 3RJAA 5HHZA 1AHZA 1MBBA
chains in the Genus database with same CATH superfamily
3W8XA 1ZR6A 2Y08A 4PVEA 5I1VA 1V97A 3W8WA 3ETRB 2MBRA 5D79A 3RJ8A 3SR6B 1W1OA 1RM6B 3S1FA 2AXRA 1N62C 5K8EA 1N60C 2VFTA 4ZOHB 1FO4A 2I0KA 3S1DA 3S1CA 1E8FA 5HQXA 3FWAA 1DIIA 1W1JA 3I99A 2VFUA 4OALA 1QLTA 1I19A 1E0YA 2UUUA 2Y3RA 5AE3A 3HSUA 3NVYB 1ZXIC 4PYTA 3NVZB 2QPMA 4MLAA 1AHVA 3VTEA 3PQBA 1MBTA 1W1KA 5G5GB 1DZNA 3AM9A 3EJEB 1QLUA 2NQWA 2P13A 2P4PA 4BC9A 1FIQB 3LAEA 2VFSA 2VFRA 1W1RA 4ML8A 1UXYA 2GQUA 3EJDB 2PLIA 1F0XA 1FFVC 2VFVA 1WYGA 3D2JA 3KJMA 3TSHA 3FW8A 1VAOA 2VAOA 3D2HA 4PVJA 3POPA 2BVHA 3DQ0A 3TX1A 2YVSA 3LLBA 3JS8A 3GSYA 3PM9A 3HRDC 3TSJA 2EXRA 3D2DA 2BVGA 2R8DA 1JROA 1VDVA 4JB1A 3NS1B 2O3GA 2Q4WA 4PVKA 4PWBA 4UD8A 1W1LA 3C0PA 5FXEA 5FXPA 1HSKA 1N63C 5AE2A 2PLSA 2OAIA 3BW7A 1T3QC 4PZFA 5G5HB 3FW7A 3W8ZA 5ADZA 2Y4GA 5AWVA 2UUVA 1W1SA 2QKNA 5L6FA 2Y3SA 1W1QA 1SB3B 2Q85A 3DEDA 1N5WC 3S1EA 4EC3A 5HMRA 3EUB3 2P3HA 1N5XA 1WVEA 2IPIA 3AMZA 3EJBB 1JRPA 4HG0A 5FXFA 3NVVB 2W55A 1WVFA 2W3SA 4BC7A 1N61C 2GQTA 2R2ZA 5L6GA 2RK5A 4DNSA 5FXDA 2BVFA 2W54A 4BCAA 1DIQA 4PWCA 1AHUA 3B9JB 4O95A 4BBYA 4PVHA 1E8GA 1W1MA 3NRZB 2WDWA 4JAYA 1E8HA 1FFUC 5I1WA 3FW9A 2E3TA 3NVWB 5AE1A 4XLOA 2W3RA 3AN1A 3RJAA 5HHZA 1AHZA 1MBBA
chains in the Genus database with same CATH topology
3W8XA 1ZR6A 2Y08A 4PVEA 5I1VA 1V97A 3W8WA 3ETRB 2MBRA 5D79A 3RJ8A 3SR6B 1W1OA 1RM6B 3S1FA 2AXRA 1N62C 5K8EA 1N60C 2VFTA 4ZOHB 1FO4A 2I0KA 3S1DA 3S1CA 1E8FA 5HQXA 3FWAA 1DIIA 1W1JA 3I99A 2VFUA 4OALA 1QLTA 1I19A 1E0YA 2UUUA 2Y3RA 5AE3A 3HSUA 3NVYB 1ZXIC 4PYTA 3NVZB 2QPMA 4MLAA 1AHVA 3VTEA 3PQBA 1MBTA 1W1KA 5G5GB 1DZNA 3AM9A 1QLUA 2NQWA 2P13A 2P4PA 4BC9A 1FIQB 3LAEA 2VFSA 2VFRA 1W1RA 4ML8A 1UXYA 2GQUA 2PLIA 1F0XA 1FFVC 2VFVA 1WYGA 3D2JA 3KJMA 3TSHA 3FW8A 1VAOA 2VAOA 3D2HA 4PVJA 3POPA 2BVHA 3DQ0A 3TX1A 2YVSA 3LLBA 3JS8A 3GSYA 3PM9A 3HRDC 3TSJA 2EXRA 3D2DA 2BVGA 2R8DA 1JROA 1VDVA 4JB1A 3NS1B 2O3GA 2Q4WA 4PVKA 4PWBA 4UD8A 1W1LA 3C0PA 5FXEA 5FXPA 1HSKA 1N63C 5AE2A 2PLSA 2OAIA 3BW7A 1T3QC 4PZFA 5G5HB 3FW7A 3W8ZA 5ADZA 2Y4GA 5AWVA 2UUVA 1W1SA 2QKNA 5L6FA 2Y3SA 1W1QA 1SB3B 2Q85A 3DEDA 1N5WC 3S1EA 4EC3A 5HMRA 3EUB3 2P3HA 1N5XA 1WVEA 2IPIA 3AMZA 1JRPA 4HG0A 5FXFA 3NVVB 2W55A 1WVFA 2W3SA 4BC7A 1N61C 2GQTA 2R2ZA 5L6GA 2RK5A 4DNSA 5FXDA 2BVFA 2W54A 4BCAA 1DIQA 4PWCA 1AHUA 3B9JB 4O95A 4BBYA 4PVHA 1E8GA 1W1MA 3NRZB 2WDWA 4JAYA 1E8HA 1FFUC 5I1WA 3FW9A 2E3TA 3NVWB 5AE1A 4XLOA 2W3RA 3AN1A 3RJAA 5HHZA 1AHZA 1MBBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8X A;  1ZR6 A;  2Y08 A;  4PVE A;  5I1V A;  1V97 A;  3W8W A;  3ETR B;  2MBR A;  5D79 A;  3RJ8 A;  3SR6 B;  1W1O A;  3S1F A;  2AXR A;  1N62 C;  5K8E A;  1N60 C;  2VFT A;  4ZOH B;  1FO4 A;  2I0K A;  3S1D A;  3S1C A;  1E8F A;  5HQX A;  3FWA A;  1DII A;  1W1J A;  3I99 A;  2VFU A;  4OAL A;  1QLT A;  1I19 A;  1E0Y A;  2Y3R A;  5AE3 A;  3HSU A;  1ZXI C;  4PYT A;  3NVZ B;  2QPM A;  4MLA A;  1AHV A;  3VTE A;  3PQB A;  1MBT A;  1W1K A;  1DZN A;  3AM9 A;  1QLU A;  4BC9 A;  1FIQ B;  2VFS A;  2VFR A;  1W1R A;  4ML8 A;  1UXY A;  2GQU A;  1F0X A;  1FFV C;  2VFV A;  1WYG A;  3D2J A;  3KJM A;  3TSH A;  3FW8 A;  1VAO A;  2VAO A;  3D2H A;  4PVJ A;  3POP A;  2BVH A;  3DQ0 A;  3TX1 A;  3JS8 A;  3GSY A;  3PM9 A;  3TSJ A;  2EXR A;  3D2D A;  2BVG A;  1JRO A;  1VDV A;  4JB1 A;  3NS1 B;  2Q4W A;  4PVK A;  4PWB A;  4UD8 A;  1W1L A;  3C0P A;  5FXE A;  5FXP A;  1HSK A;  1N63 C;  5AE2 A;  3BW7 A;  1T3Q C;  4PZF A;  3FW7 A;  3W8Z A;  5ADZ A;  2Y4G A;  5AWV A;  1W1S A;  2QKN A;  5L6F A;  2Y3S A;  1W1Q A;  2Q85 A;  1N5W C;  3S1E A;  4EC3 A;  5HMR A;  3EUB 3;  1N5X A;  1WVE A;  2IPI A;  3AMZ A;  5FXF A;  2W55 A;  1WVF A;  2W3S A;  4BC7 A;  1N61 C;  2GQT A;  5L6G A;  4DNS A;  5FXD A;  2BVF A;  2W54 A;  4BCA A;  1DIQ A;  4PWC A;  1AHU A;  3B9J B;  4O95 A;  4BBY A;  4PVH A;  1E8G A;  1W1M A;  3NRZ B;  2WDW A;  4JAY A;  1E8H A;  1FFU C;  5I1W A;  3FW9 A;  2E3T A;  5AE1 A;  4XLO A;  2W3R A;  3AN1 A;  3RJA A;  5HHZ A;  1AHZ A;  1MBB A; 
#chains in the Genus database with same CATH topology
 3W8X A;  1ZR6 A;  2Y08 A;  4PVE A;  5I1V A;  1V97 A;  3W8W A;  3ETR B;  2MBR A;  5D79 A;  3RJ8 A;  3SR6 B;  1W1O A;  1RM6 B;  3S1F A;  2AXR A;  1N62 C;  5K8E A;  1N60 C;  2VFT A;  4ZOH B;  1FO4 A;  2I0K A;  3S1D A;  3S1C A;  1E8F A;  5HQX A;  3FWA A;  1DII A;  1W1J A;  3I99 A;  2VFU A;  4OAL A;  1QLT A;  1I19 A;  1E0Y A;  2UUU A;  2Y3R A;  5AE3 A;  3HSU A;  3NVY B;  1ZXI C;  4PYT A;  3NVZ B;  2QPM A;  4MLA A;  1AHV A;  3VTE A;  3PQB A;  1MBT A;  1W1K A;  5G5G B;  1DZN A;  3AM9 A;  3EJE B;  1QLU A;  2NQW A;  2P13 A;  2P4P A;  4BC9 A;  1FIQ B;  3LAE A;  2VFS A;  2VFR A;  1W1R A;  4ML8 A;  1UXY A;  2GQU A;  3EJD B;  2PLI A;  1F0X A;  1FFV C;  2VFV A;  1WYG A;  3D2J A;  3KJM A;  3TSH A;  3FW8 A;  1VAO A;  2VAO A;  3D2H A;  4PVJ A;  3POP A;  2BVH A;  3DQ0 A;  3TX1 A;  2YVS A;  3LLB A;  3JS8 A;  3GSY A;  3PM9 A;  3HRD C;  3TSJ A;  2EXR A;  3D2D A;  2BVG A;  2R8D A;  1JRO A;  1VDV A;  4JB1 A;  3NS1 B;  2O3G A;  2Q4W A;  4PVK A;  4PWB A;  4UD8 A;  1W1L A;  3C0P A;  5FXE A;  5FXP A;  1HSK A;  1N63 C;  5AE2 A;  2PLS A;  2OAI A;  3BW7 A;  1T3Q C;  4PZF A;  5G5H B;  3FW7 A;  3W8Z A;  5ADZ A;  2Y4G A;  5AWV A;  2UUV A;  1W1S A;  2QKN A;  5L6F A;  2Y3S A;  1W1Q A;  1SB3 B;  2Q85 A;  3DED A;  1N5W C;  3S1E A;  4EC3 A;  5HMR A;  3EUB 3;  2P3H A;  1N5X A;  1WVE A;  2IPI A;  3AMZ A;  3EJB B;  1JRP A;  4HG0 A;  5FXF A;  3NVV B;  2W55 A;  1WVF A;  2W3S A;  4BC7 A;  1N61 C;  2GQT A;  2R2Z A;  5L6G A;  2RK5 A;  4DNS A;  5FXD A;  2BVF A;  2W54 A;  4BCA A;  1DIQ A;  4PWC A;  1AHU A;  3B9J B;  4O95 A;  4BBY A;  4PVH A;  1E8G A;  1W1M A;  3NRZ B;  2WDW A;  4JAY A;  1E8H A;  1FFU C;  5I1W A;  3FW9 A;  2E3T A;  3NVW B;  5AE1 A;  4XLO A;  2W3R A;  3AN1 A;  3RJA A;  5HHZ A;  1AHZ A;  1MBB A; 
#chains in the Genus database with same CATH homology
 3W8X A;  1ZR6 A;  2Y08 A;  4PVE A;  5I1V A;  1V97 A;  3W8W A;  3ETR B;  2MBR A;  5D79 A;  3RJ8 A;  3SR6 B;  1W1O A;  1RM6 B;  3S1F A;  2AXR A;  1N62 C;  5K8E A;  1N60 C;  2VFT A;  4ZOH B;  1FO4 A;  2I0K A;  3S1D A;  3S1C A;  1E8F A;  5HQX A;  3FWA A;  1DII A;  1W1J A;  3I99 A;  2VFU A;  4OAL A;  1QLT A;  1I19 A;  1E0Y A;  2UUU A;  2Y3R A;  5AE3 A;  3HSU A;  3NVY B;  1ZXI C;  4PYT A;  3NVZ B;  2QPM A;  4MLA A;  1AHV A;  3VTE A;  3PQB A;  1MBT A;  1W1K A;  5G5G B;  1DZN A;  3AM9 A;  1QLU A;  2NQW A;  2P13 A;  2P4P A;  4BC9 A;  1FIQ B;  3LAE A;  2VFS A;  2VFR A;  1W1R A;  4ML8 A;  1UXY A;  2GQU A;  2PLI A;  1F0X A;  1FFV C;  2VFV A;  1WYG A;  3D2J A;  3KJM A;  3TSH A;  3FW8 A;  1VAO A;  2VAO A;  3D2H A;  4PVJ A;  3POP A;  2BVH A;  3DQ0 A;  3TX1 A;  2YVS A;  3LLB A;  3JS8 A;  3GSY A;  3PM9 A;  3HRD C;  3TSJ A;  2EXR A;  3D2D A;  2BVG A;  2R8D A;  1JRO A;  1VDV A;  4JB1 A;  3NS1 B;  2O3G A;  2Q4W A;  4PVK A;  4PWB A;  4UD8 A;  1W1L A;  3C0P A;  5FXE A;  5FXP A;  1HSK A;  1N63 C;  5AE2 A;  2PLS A;  2OAI A;  3BW7 A;  1T3Q C;  4PZF A;  5G5H B;  3FW7 A;  3W8Z A;  5ADZ A;  2Y4G A;  5AWV A;  2UUV A;  1W1S A;  2QKN A;  5L6F A;  2Y3S A;  1W1Q A;  1SB3 B;  2Q85 A;  3DED A;  1N5W C;  3S1E A;  4EC3 A;  5HMR A;  3EUB 3;  2P3H A;  1N5X A;  1WVE A;  2IPI A;  3AMZ A;  1JRP A;  4HG0 A;  5FXF A;  3NVV B;  2W55 A;  1WVF A;  2W3S A;  4BC7 A;  1N61 C;  2GQT A;  2R2Z A;  5L6G A;  2RK5 A;  4DNS A;  5FXD A;  2BVF A;  2W54 A;  4BCA A;  1DIQ A;  4PWC A;  1AHU A;  3B9J B;  4O95 A;  4BBY A;  4PVH A;  1E8G A;  1W1M A;  3NRZ B;  2WDW A;  4JAY A;  1E8H A;  1FFU C;  5I1W A;  3FW9 A;  2E3T A;  3NVW B;  5AE1 A;  4XLO A;  2W3R A;  3AN1 A;  3RJA A;  5HHZ A;  1AHZ A;  1MBB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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