3FW8A

Structure of berberine bridge enzyme, c166a variant
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
molecule keywords Reticuline oxidase
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw8A03
4ZOHB 3AM9A 4OALA 1E8GA 1HSKA 3EUB3 3TX1A 3KJMA 1VDVA 2VFUA 3I99A 4JB1A 1N5XA 1DIQA 1QLTA 4DNSA 1W1QA 3C0PA 3FW9A 3VTEA 1WYGA 1UXYA 3FWAA 2GQTA 1N63C 3PQBA 1DIIA 1W1KA 3TSHA 4PWBA 1W1RA 1WVFA 3BW7A 3D2DA 5HMRA 3JS8A 5D79A 1T3QC 2VFVA 4BC9A 3S1FA 1ZXIC 3RJAA 5HQXA 3NVZB 1W1SA 2E3TA 1QLUA 2Q4WA 4PVHA 4PVKA 4MLAA 1N60C 1FFVC 2W3RA 3B9JB 3ETRB 4ML8A 2QPMA 4PZFA 1N62C 4UD8A 1DZNA 1E0YA 1F0XA 2IPIA 3S1DA 1W1OA 3RJ8A 2BVGA 1AHZA 1W1MA 4JAYA 4O95A 5FXEA 2VFSA 2WDWA 2W3SA 2MBRA 1JROA 3FW8A 4PWCA 2Y3RA 3HSUA 5L6GA 5FXFA 5FXDA 1FO4A 1AHUA 1E8HA 1WVEA 3POPA 3NS1B 5AE1A 3SR6B 1W1LA 5K8EA 3FW7A 4BBYA 1ZR6A 5L6FA 1AHVA 5ADZA 3W8WA 2BVFA 2W55A 4BCAA 3PM9A 3S1EA 2W54A 4XLOA 2VAOA 4PYTA 5FXPA 3GSYA 3DQ0A 2Q85A 3TSJA 5AWVA 3NRZB 1MBTA 1FIQB 2GQUA 2VFTA 1W1JA 1VAOA 1N5WC 5AE2A 3W8XA 2Y4GA 1V97A 5I1VA 3D2HA 3AN1A 1MBBA 1E8FA 2I0KA 5HHZA 4EC3A 2BVHA 2Y3SA 1I19A 3AMZA 3D2JA 2Y08A 1N61C 2EXRA 3S1CA 2AXRA 2QKNA 2VFRA 3W8ZA 5AE3A 4PVJA 4PVEA 4BC7A 5I1WA 1FFUC
chains in the Genus database with same CATH superfamily
4ZOHB 1RM6B 3AM9A 2P3HA 4OALA 1E8GA 1HSKA 3EUB3 1SB3B 3TX1A 3KJMA 2O3GA 1VDVA 2PLIA 2VFUA 2P13A 3I99A 4JB1A 1N5XA 1DIQA 2PLSA 1QLTA 4DNSA 1W1QA 3C0PA 3FW9A 3VTEA 1WYGA 1UXYA 3FWAA 2GQTA 5G5GB 1N63C 3PQBA 1DIIA 1W1KA 3EJBB 3TSHA 4PWBA 1W1RA 1WVFA 3BW7A 3D2DA 3NVWB 5HMRA 3JS8A 5D79A 1T3QC 2VFVA 4BC9A 3S1FA 1ZXIC 2RK5A 3RJAA 5HQXA 3NVZB 1W1SA 2E3TA 1QLUA 2Q4WA 4PVHA 4PVKA 4MLAA 1N60C 1FFVC 2W3RA 3B9JB 3ETRB 4ML8A 2QPMA 4PZFA 1N62C 4UD8A 1DZNA 1E0YA 1F0XA 2IPIA 2R8DA 3S1DA 1W1OA 3RJ8A 2BVGA 1AHZA 2UUUA 3DEDA 1W1MA 4JAYA 4O95A 5FXEA 2VFSA 2WDWA 2W3SA 2MBRA 1JROA 3FW8A 3NVVB 4PWCA 2Y3RA 3HSUA 5L6GA 1JRPA 5FXFA 5FXDA 1FO4A 1AHUA 1E8HA 1WVEA 3HRDC 3POPA 3NS1B 5AE1A 3SR6B 1W1LA 2UUVA 3FW7A 4BBYA 1ZR6A 5K8EA 5L6FA 1AHVA 5ADZA 3EJDB 3W8WA 2BVFA 2W55A 4BCAA 3PM9A 3S1EA 2W54A 3NVYB 4XLOA 2VAOA 4PYTA 5FXPA 3GSYA 3DQ0A 2Q85A 3TSJA 5AWVA 3NRZB 1MBTA 1FIQB 2GQUA 2R2ZA 2VFTA 1W1JA 1VAOA 1N5WC 5AE2A 2P4PA 3W8XA 2Y4GA 1V97A 5I1VA 3D2HA 3AN1A 1MBBA 5G5HB 2YVSA 1E8FA 2I0KA 3LLBA 5HHZA 3EJEB 4EC3A 2BVHA 2Y3SA 1I19A 3AMZA 3D2JA 4HG0A 2OAIA 2NQWA 1N61C 2Y08A 2EXRA 3S1CA 2AXRA 2QKNA 2VFRA 3LAEA 3W8ZA 5AE3A 4PVJA 4PVEA 4BC7A 5I1WA 1FFUC
chains in the Genus database with same CATH topology
4ZOHB 1RM6B 3AM9A 2P3HA 4OALA 1E8GA 1HSKA 3EUB3 1SB3B 3TX1A 3KJMA 2O3GA 1VDVA 2PLIA 2VFUA 2P13A 3I99A 4JB1A 1N5XA 1DIQA 2PLSA 1QLTA 4DNSA 1W1QA 3C0PA 3FW9A 3VTEA 1WYGA 1UXYA 3FWAA 2GQTA 5G5GB 1N63C 3PQBA 1DIIA 1W1KA 3TSHA 4PWBA 1W1RA 1WVFA 3BW7A 3D2DA 5HMRA 3NVWB 3JS8A 5D79A 1T3QC 2VFVA 4BC9A 3S1FA 1ZXIC 2RK5A 3RJAA 5HQXA 3NVZB 1W1SA 2E3TA 1QLUA 2Q4WA 4PVHA 4PVKA 4MLAA 1N60C 1FFVC 2W3RA 3B9JB 3ETRB 4ML8A 2QPMA 4PZFA 1N62C 4UD8A 1DZNA 1E0YA 1F0XA 2IPIA 2R8DA 3S1DA 1W1OA 3RJ8A 2BVGA 1AHZA 2UUUA 3DEDA 1W1MA 4JAYA 4O95A 5FXEA 2VFSA 2WDWA 2W3SA 2MBRA 1JROA 3FW8A 4PWCA 2Y3RA 3NVVB 3HSUA 5L6GA 1JRPA 5FXFA 5FXDA 1FO4A 1AHUA 1E8HA 1WVEA 3HRDC 3POPA 3NS1B 5AE1A 3SR6B 1W1LA 2UUVA 3FW7A 4BBYA 1ZR6A 5K8EA 5L6FA 1AHVA 5ADZA 3W8WA 2BVFA 2W55A 4BCAA 3PM9A 3S1EA 2W54A 3NVYB 4XLOA 2VAOA 4PYTA 5FXPA 3GSYA 3DQ0A 2Q85A 3TSJA 5AWVA 3NRZB 1MBTA 1FIQB 2GQUA 2R2ZA 2VFTA 1W1JA 1VAOA 1N5WC 5AE2A 2P4PA 3W8XA 2Y4GA 1V97A 5I1VA 3D2HA 3AN1A 1MBBA 5G5HB 2YVSA 1E8FA 2I0KA 3LLBA 5HHZA 4EC3A 2BVHA 2Y3SA 1I19A 3AMZA 3D2JA 4HG0A 2OAIA 2NQWA 1N61C 2Y08A 2EXRA 3S1CA 2AXRA 2QKNA 2VFRA 3LAEA 3W8ZA 5AE3A 4PVJA 4PVEA 4BC7A 5I1WA 1FFUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZOH B;  3AM9 A;  4OAL A;  1E8G A;  1HSK A;  3EUB 3;  3TX1 A;  3KJM A;  1VDV A;  2VFU A;  3I99 A;  4JB1 A;  1N5X A;  1DIQ A;  1QLT A;  4DNS A;  1W1Q A;  3C0P A;  3FW9 A;  3VTE A;  1WYG A;  1UXY A;  3FWA A;  2GQT A;  1N63 C;  3PQB A;  1DII A;  1W1K A;  3TSH A;  4PWB A;  1W1R A;  1WVF A;  3BW7 A;  3D2D A;  5HMR A;  3JS8 A;  5D79 A;  1T3Q C;  2VFV A;  4BC9 A;  3S1F A;  1ZXI C;  3RJA A;  5HQX A;  3NVZ B;  1W1S A;  2E3T A;  1QLU A;  2Q4W A;  4PVH A;  4PVK A;  4MLA A;  1N60 C;  1FFV C;  2W3R A;  3B9J B;  3ETR B;  4ML8 A;  2QPM A;  4PZF A;  1N62 C;  4UD8 A;  1DZN A;  1E0Y A;  1F0X A;  2IPI A;  3S1D A;  1W1O A;  3RJ8 A;  2BVG A;  1AHZ A;  1W1M A;  4JAY A;  4O95 A;  5FXE A;  2VFS A;  2WDW A;  2W3S A;  2MBR A;  1JRO A;  3FW8 A;  4PWC A;  2Y3R A;  3HSU A;  5L6G A;  5FXF A;  5FXD A;  1FO4 A;  1AHU A;  1E8H A;  1WVE A;  3POP A;  3NS1 B;  5AE1 A;  3SR6 B;  1W1L A;  5K8E A;  3FW7 A;  4BBY A;  1ZR6 A;  5L6F A;  1AHV A;  5ADZ A;  3W8W A;  2BVF A;  2W55 A;  4BCA A;  3PM9 A;  3S1E A;  2W54 A;  4XLO A;  2VAO A;  4PYT A;  5FXP A;  3GSY A;  3DQ0 A;  2Q85 A;  3TSJ A;  5AWV A;  3NRZ B;  1MBT A;  1FIQ B;  2GQU A;  2VFT A;  1W1J A;  1VAO A;  1N5W C;  5AE2 A;  3W8X A;  2Y4G A;  1V97 A;  5I1V A;  3D2H A;  3AN1 A;  1MBB A;  1E8F A;  2I0K A;  5HHZ A;  4EC3 A;  2BVH A;  2Y3S A;  1I19 A;  3AMZ A;  3D2J A;  2Y08 A;  1N61 C;  2EXR A;  3S1C A;  2AXR A;  2QKN A;  2VFR A;  3W8Z A;  5AE3 A;  4PVJ A;  4PVE A;  4BC7 A;  5I1W A;  1FFU C; 
#chains in the Genus database with same CATH topology
 4ZOH B;  1RM6 B;  3AM9 A;  2P3H A;  4OAL A;  1E8G A;  1HSK A;  3EUB 3;  1SB3 B;  3TX1 A;  3KJM A;  2O3G A;  1VDV A;  2PLI A;  2VFU A;  2P13 A;  3I99 A;  4JB1 A;  1N5X A;  1DIQ A;  2PLS A;  1QLT A;  4DNS A;  1W1Q A;  3C0P A;  3FW9 A;  3VTE A;  1WYG A;  1UXY A;  3FWA A;  2GQT A;  5G5G B;  1N63 C;  3PQB A;  1DII A;  1W1K A;  3EJB B;  3TSH A;  4PWB A;  1W1R A;  1WVF A;  3BW7 A;  3D2D A;  3NVW B;  5HMR A;  3JS8 A;  5D79 A;  1T3Q C;  2VFV A;  4BC9 A;  3S1F A;  1ZXI C;  2RK5 A;  3RJA A;  5HQX A;  3NVZ B;  1W1S A;  2E3T A;  1QLU A;  2Q4W A;  4PVH A;  4PVK A;  4MLA A;  1N60 C;  1FFV C;  2W3R A;  3B9J B;  3ETR B;  4ML8 A;  2QPM A;  4PZF A;  1N62 C;  4UD8 A;  1DZN A;  1E0Y A;  1F0X A;  2IPI A;  2R8D A;  3S1D A;  1W1O A;  3RJ8 A;  2BVG A;  1AHZ A;  2UUU A;  3DED A;  1W1M A;  4JAY A;  4O95 A;  5FXE A;  2VFS A;  2WDW A;  2W3S A;  2MBR A;  1JRO A;  3FW8 A;  3NVV B;  4PWC A;  2Y3R A;  3HSU A;  5L6G A;  1JRP A;  5FXF A;  5FXD A;  1FO4 A;  1AHU A;  1E8H A;  1WVE A;  3HRD C;  3POP A;  3NS1 B;  5AE1 A;  3SR6 B;  1W1L A;  2UUV A;  3FW7 A;  4BBY A;  1ZR6 A;  5K8E A;  5L6F A;  1AHV A;  5ADZ A;  3EJD B;  3W8W A;  2BVF A;  2W55 A;  4BCA A;  3PM9 A;  3S1E A;  2W54 A;  3NVY B;  4XLO A;  2VAO A;  4PYT A;  5FXP A;  3GSY A;  3DQ0 A;  2Q85 A;  3TSJ A;  5AWV A;  3NRZ B;  1MBT A;  1FIQ B;  2GQU A;  2R2Z A;  2VFT A;  1W1J A;  1VAO A;  1N5W C;  5AE2 A;  2P4P A;  3W8X A;  2Y4G A;  1V97 A;  5I1V A;  3D2H A;  3AN1 A;  1MBB A;  5G5H B;  2YVS A;  1E8F A;  2I0K A;  3LLB A;  5HHZ A;  3EJE B;  4EC3 A;  2BVH A;  2Y3S A;  1I19 A;  3AMZ A;  3D2J A;  4HG0 A;  2OAI A;  2NQW A;  1N61 C;  2Y08 A;  2EXR A;  3S1C A;  2AXR A;  2QKN A;  2VFR A;  3LAE A;  3W8Z A;  5AE3 A;  4PVJ A;  4PVE A;  4BC7 A;  5I1W A;  1FFU C; 
#chains in the Genus database with same CATH homology
 4ZOH B;  1RM6 B;  3AM9 A;  2P3H A;  4OAL A;  1E8G A;  1HSK A;  3EUB 3;  1SB3 B;  3TX1 A;  3KJM A;  2O3G A;  1VDV A;  2PLI A;  2VFU A;  2P13 A;  3I99 A;  4JB1 A;  1N5X A;  1DIQ A;  2PLS A;  1QLT A;  4DNS A;  1W1Q A;  3C0P A;  3FW9 A;  3VTE A;  1WYG A;  1UXY A;  3FWA A;  2GQT A;  5G5G B;  1N63 C;  3PQB A;  1DII A;  1W1K A;  3TSH A;  4PWB A;  1W1R A;  1WVF A;  3BW7 A;  3D2D A;  5HMR A;  3NVW B;  3JS8 A;  5D79 A;  1T3Q C;  2VFV A;  4BC9 A;  3S1F A;  1ZXI C;  2RK5 A;  3RJA A;  5HQX A;  3NVZ B;  1W1S A;  2E3T A;  1QLU A;  2Q4W A;  4PVH A;  4PVK A;  4MLA A;  1N60 C;  1FFV C;  2W3R A;  3B9J B;  3ETR B;  4ML8 A;  2QPM A;  4PZF A;  1N62 C;  4UD8 A;  1DZN A;  1E0Y A;  1F0X A;  2IPI A;  2R8D A;  3S1D A;  1W1O A;  3RJ8 A;  2BVG A;  1AHZ A;  2UUU A;  3DED A;  1W1M A;  4JAY A;  4O95 A;  5FXE A;  2VFS A;  2WDW A;  2W3S A;  2MBR A;  1JRO A;  3FW8 A;  4PWC A;  2Y3R A;  3NVV B;  3HSU A;  5L6G A;  1JRP A;  5FXF A;  5FXD A;  1FO4 A;  1AHU A;  1E8H A;  1WVE A;  3HRD C;  3POP A;  3NS1 B;  5AE1 A;  3SR6 B;  1W1L A;  2UUV A;  3FW7 A;  4BBY A;  1ZR6 A;  5K8E A;  5L6F A;  1AHV A;  5ADZ A;  3W8W A;  2BVF A;  2W55 A;  4BCA A;  3PM9 A;  3S1E A;  2W54 A;  3NVY B;  4XLO A;  2VAO A;  4PYT A;  5FXP A;  3GSY A;  3DQ0 A;  2Q85 A;  3TSJ A;  5AWV A;  3NRZ B;  1MBT A;  1FIQ B;  2GQU A;  2R2Z A;  2VFT A;  1W1J A;  1VAO A;  1N5W C;  5AE2 A;  2P4P A;  3W8X A;  2Y4G A;  1V97 A;  5I1V A;  3D2H A;  3AN1 A;  1MBB A;  5G5H B;  2YVS A;  1E8F A;  2I0K A;  3LLB A;  5HHZ A;  4EC3 A;  2BVH A;  2Y3S A;  1I19 A;  3AMZ A;  3D2J A;  4HG0 A;  2OAI A;  2NQW A;  1N61 C;  2Y08 A;  2EXR A;  3S1C A;  2AXR A;  2QKN A;  2VFR A;  3LAE A;  3W8Z A;  5AE3 A;  4PVJ A;  4PVE A;  4BC7 A;  5I1W A;  1FFU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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