3FW8A

Structure of berberine bridge enzyme, c166a variant
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
molecule keywords Reticuline oxidase
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw8A03
5ADZA 5L6GA 2Y08A 2AXRA 2MBRA 2Y3RA 5FXDA 3PQBA 1MBTA 3W8XA 2Y3SA 2BVHA 4PVKA 4EC3A 4BC9A 3D2DA 3RJAA 1W1RA 1W1MA 4PVEA 3PM9A 3FW9A 1W1OA 2EXRA 3VTEA 1ZR6A 1MBBA 3NRZB 3TSHA 3HSUA 4UD8A 4PWBA 4PWCA 1N5XA 4OALA 3GSYA 4PVHA 3JS8A 3FWAA 1W1SA 3B9JB 1I19A 1AHZA 3S1CA 1V97A 1AHUA 3AN1A 1UXYA 4JB1A 3BW7A 1N60C 3NVZB 4ZOHB 2VFVA 3TX1A 1HSKA 1AHVA 4JAYA 5FXFA 1DIQA 3S1FA 4BCAA 1N62C 4DNSA 1F0XA 2W55A 1E8HA 3C0PA 4O95A 4XLOA 1W1QA 3D2JA 4BBYA 5K8EA 1FFUC 1JROA 4MLAA 5AWVA 5FXPA 2GQTA 1FIQB 3POPA 1DIIA 2BVGA 1WVEA 2QKNA 1N5WC 5I1WA 5L6FA 3TSJA 5FXEA 5I1VA 3W8ZA 3FW8A 1W1KA 4PZFA 1WVFA 1VDVA 2VFSA 3KJMA 2QPMA 2Q85A 5AE2A 1T3QC 2VAOA 3ETRB 2VFUA 1QLTA 2W3SA 5HMRA 2I0KA 5AE1A 4ML8A 3I99A 5AE3A 3D2HA 3DQ0A 2E3TA 3AM9A 2VFTA 2BVFA 4PVJA 1FFVC 1E8GA 1DZNA 1ZXIC 1W1JA 1N61C 1E0YA 3SR6B 2IPIA 3FW7A 3S1EA 2W3RA 3RJ8A 4BC7A 1N63C 2VFRA 5HQXA 3NS1B 1FO4A 1WYGA 3S1DA 1QLUA 2GQUA 5D79A 2W54A 1W1LA 4PYTA 2WDWA 3EUB3 5HHZA 1VAOA 2Q4WA 3AMZA 2Y4GA 1E8FA 3W8WA
chains in the Genus database with same CATH superfamily
5ADZA 5L6GA 2Y08A 2AXRA 2MBRA 2Y3RA 5FXDA 3PQBA 3LAEA 1MBTA 3W8XA 4HG0A 2Y3SA 2BVHA 4PVKA 4EC3A 4BC9A 3D2DA 3RJAA 1W1RA 1W1MA 4PVEA 3PM9A 2UUVA 3FW9A 1W1OA 2EXRA 3VTEA 1ZR6A 3NVWB 1MBBA 3NRZB 3TSHA 3HSUA 4UD8A 4PWBA 2YVSA 4PWCA 1N5XA 4OALA 3GSYA 4PVHA 3JS8A 3FWAA 1W1SA 3B9JB 5G5GB 1I19A 1AHZA 3S1CA 1V97A 1AHUA 3AN1A 1UXYA 4JB1A 2P3HA 3BW7A 1N60C 3NVZB 4ZOHB 2VFVA 3TX1A 1HSKA 1AHVA 4JAYA 5FXFA 1DIQA 3S1FA 4BCAA 1N62C 4DNSA 1F0XA 2W55A 1E8HA 3C0PA 4O95A 4XLOA 1W1QA 3D2JA 3DEDA 4BBYA 5K8EA 1FFUC 1JROA 4MLAA 5AWVA 2UUUA 5FXPA 2GQTA 1FIQB 3POPA 2O3GA 1DIIA 2BVGA 1WVEA 2QKNA 1N5WC 5I1WA 5L6FA 3TSJA 5FXEA 5I1VA 3W8ZA 3FW8A 1W1KA 3EJBB 4PZFA 1WVFA 1VDVA 2VFSA 3KJMA 2QPMA 2Q85A 3HRDC 5AE2A 1T3QC 2VAOA 3ETRB 2VFUA 1QLTA 2W3SA 5HMRA 2I0KA 3NVYB 5AE1A 5G5HB 3LLBA 4ML8A 3I99A 5AE3A 2P13A 3D2HA 3EJEB 3DQ0A 1RM6B 2E3TA 3AM9A 2VFTA 2BVFA 4PVJA 1SB3B 2NQWA 1FFVC 3EJDB 1E8GA 1DZNA 1ZXIC 1W1JA 2PLIA 1N61C 1E0YA 3SR6B 2IPIA 3FW7A 3S1EA 1JRPA 2RK5A 2W3RA 3RJ8A 4BC7A 2PLSA 1N63C 2VFRA 5HQXA 3NS1B 1FO4A 1WYGA 3S1DA 2R2ZA 2OAIA 1QLUA 2GQUA 5D79A 2W54A 1W1LA 2P4PA 4PYTA 2WDWA 3EUB3 2R8DA 5HHZA 1VAOA 3NVVB 2Q4WA 3AMZA 2Y4GA 1E8FA 3W8WA
chains in the Genus database with same CATH topology
5ADZA 5L6GA 2Y08A 2AXRA 2MBRA 2Y3RA 5FXDA 3PQBA 3LAEA 1MBTA 3W8XA 4HG0A 2Y3SA 2BVHA 4PVKA 4EC3A 4BC9A 3D2DA 3RJAA 1W1RA 1W1MA 4PVEA 3PM9A 2UUVA 3FW9A 1W1OA 2EXRA 3VTEA 1ZR6A 3NVWB 1MBBA 3NRZB 3TSHA 3HSUA 4UD8A 4PWBA 2YVSA 4PWCA 1N5XA 4OALA 3GSYA 4PVHA 3JS8A 3FWAA 1W1SA 3B9JB 5G5GB 1I19A 1AHZA 3S1CA 1V97A 1AHUA 3AN1A 1UXYA 4JB1A 2P3HA 3BW7A 1N60C 3NVZB 4ZOHB 2VFVA 3TX1A 1HSKA 1AHVA 4JAYA 5FXFA 1DIQA 3S1FA 4BCAA 1N62C 4DNSA 1F0XA 2W55A 1E8HA 3C0PA 4O95A 4XLOA 1W1QA 3D2JA 3DEDA 4BBYA 5K8EA 1FFUC 1JROA 4MLAA 5AWVA 2UUUA 5FXPA 2GQTA 1FIQB 3POPA 2O3GA 1DIIA 2BVGA 1WVEA 2QKNA 1N5WC 5I1WA 5L6FA 3TSJA 5FXEA 5I1VA 3W8ZA 3FW8A 1W1KA 4PZFA 1WVFA 1VDVA 2VFSA 3KJMA 2QPMA 2Q85A 3HRDC 5AE2A 1T3QC 2VAOA 3ETRB 2VFUA 1QLTA 2W3SA 5HMRA 2I0KA 3NVYB 5AE1A 5G5HB 3LLBA 4ML8A 3I99A 5AE3A 2P13A 3D2HA 3DQ0A 1RM6B 2E3TA 3AM9A 2VFTA 2BVFA 4PVJA 1SB3B 2NQWA 1FFVC 1E8GA 1DZNA 1ZXIC 1W1JA 2PLIA 1N61C 1E0YA 3SR6B 2IPIA 3FW7A 3S1EA 1JRPA 2RK5A 2W3RA 3RJ8A 4BC7A 2PLSA 1N63C 2VFRA 5HQXA 3NS1B 1FO4A 1WYGA 3S1DA 2R2ZA 2OAIA 1QLUA 2GQUA 5D79A 2W54A 1W1LA 2P4PA 4PYTA 2WDWA 3EUB3 2R8DA 5HHZA 1VAOA 3NVVB 2Q4WA 3AMZA 2Y4GA 1E8FA 3W8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADZ A;  5L6G A;  2Y08 A;  2AXR A;  2MBR A;  2Y3R A;  5FXD A;  3PQB A;  1MBT A;  3W8X A;  2Y3S A;  2BVH A;  4PVK A;  4EC3 A;  4BC9 A;  3D2D A;  3RJA A;  1W1R A;  1W1M A;  4PVE A;  3PM9 A;  3FW9 A;  1W1O A;  2EXR A;  3VTE A;  1ZR6 A;  1MBB A;  3NRZ B;  3TSH A;  3HSU A;  4UD8 A;  4PWB A;  4PWC A;  1N5X A;  4OAL A;  3GSY A;  4PVH A;  3JS8 A;  3FWA A;  1W1S A;  3B9J B;  1I19 A;  1AHZ A;  3S1C A;  1V97 A;  1AHU A;  3AN1 A;  1UXY A;  4JB1 A;  3BW7 A;  1N60 C;  3NVZ B;  4ZOH B;  2VFV A;  3TX1 A;  1HSK A;  1AHV A;  4JAY A;  5FXF A;  1DIQ A;  3S1F A;  4BCA A;  1N62 C;  4DNS A;  1F0X A;  2W55 A;  1E8H A;  3C0P A;  4O95 A;  4XLO A;  1W1Q A;  3D2J A;  4BBY A;  5K8E A;  1FFU C;  1JRO A;  4MLA A;  5AWV A;  5FXP A;  2GQT A;  1FIQ B;  3POP A;  1DII A;  2BVG A;  1WVE A;  2QKN A;  1N5W C;  5I1W A;  5L6F A;  3TSJ A;  5FXE A;  5I1V A;  3W8Z A;  3FW8 A;  1W1K A;  4PZF A;  1WVF A;  1VDV A;  2VFS A;  3KJM A;  2QPM A;  2Q85 A;  5AE2 A;  1T3Q C;  2VAO A;  3ETR B;  2VFU A;  1QLT A;  2W3S A;  5HMR A;  2I0K A;  5AE1 A;  4ML8 A;  3I99 A;  5AE3 A;  3D2H A;  3DQ0 A;  2E3T A;  3AM9 A;  2VFT A;  2BVF A;  4PVJ A;  1FFV C;  1E8G A;  1DZN A;  1ZXI C;  1W1J A;  1N61 C;  1E0Y A;  3SR6 B;  2IPI A;  3FW7 A;  3S1E A;  2W3R A;  3RJ8 A;  4BC7 A;  1N63 C;  2VFR A;  5HQX A;  3NS1 B;  1FO4 A;  1WYG A;  3S1D A;  1QLU A;  2GQU A;  5D79 A;  2W54 A;  1W1L A;  4PYT A;  2WDW A;  3EUB 3;  5HHZ A;  1VAO A;  2Q4W A;  3AMZ A;  2Y4G A;  1E8F A;  3W8W A; 
#chains in the Genus database with same CATH topology
 5ADZ A;  5L6G A;  2Y08 A;  2AXR A;  2MBR A;  2Y3R A;  5FXD A;  3PQB A;  3LAE A;  1MBT A;  3W8X A;  4HG0 A;  2Y3S A;  2BVH A;  4PVK A;  4EC3 A;  4BC9 A;  3D2D A;  3RJA A;  1W1R A;  1W1M A;  4PVE A;  3PM9 A;  2UUV A;  3FW9 A;  1W1O A;  2EXR A;  3VTE A;  1ZR6 A;  3NVW B;  1MBB A;  3NRZ B;  3TSH A;  3HSU A;  4UD8 A;  4PWB A;  2YVS A;  4PWC A;  1N5X A;  4OAL A;  3GSY A;  4PVH A;  3JS8 A;  3FWA A;  1W1S A;  3B9J B;  5G5G B;  1I19 A;  1AHZ A;  3S1C A;  1V97 A;  1AHU A;  3AN1 A;  1UXY A;  4JB1 A;  2P3H A;  3BW7 A;  1N60 C;  3NVZ B;  4ZOH B;  2VFV A;  3TX1 A;  1HSK A;  1AHV A;  4JAY A;  5FXF A;  1DIQ A;  3S1F A;  4BCA A;  1N62 C;  4DNS A;  1F0X A;  2W55 A;  1E8H A;  3C0P A;  4O95 A;  4XLO A;  1W1Q A;  3D2J A;  3DED A;  4BBY A;  5K8E A;  1FFU C;  1JRO A;  4MLA A;  5AWV A;  2UUU A;  5FXP A;  2GQT A;  1FIQ B;  3POP A;  2O3G A;  1DII A;  2BVG A;  1WVE A;  2QKN A;  1N5W C;  5I1W A;  5L6F A;  3TSJ A;  5FXE A;  5I1V A;  3W8Z A;  3FW8 A;  1W1K A;  3EJB B;  4PZF A;  1WVF A;  1VDV A;  2VFS A;  3KJM A;  2QPM A;  2Q85 A;  3HRD C;  5AE2 A;  1T3Q C;  2VAO A;  3ETR B;  2VFU A;  1QLT A;  2W3S A;  5HMR A;  2I0K A;  3NVY B;  5AE1 A;  5G5H B;  3LLB A;  4ML8 A;  3I99 A;  5AE3 A;  2P13 A;  3D2H A;  3EJE B;  3DQ0 A;  1RM6 B;  2E3T A;  3AM9 A;  2VFT A;  2BVF A;  4PVJ A;  1SB3 B;  2NQW A;  1FFV C;  3EJD B;  1E8G A;  1DZN A;  1ZXI C;  1W1J A;  2PLI A;  1N61 C;  1E0Y A;  3SR6 B;  2IPI A;  3FW7 A;  3S1E A;  1JRP A;  2RK5 A;  2W3R A;  3RJ8 A;  4BC7 A;  2PLS A;  1N63 C;  2VFR A;  5HQX A;  3NS1 B;  1FO4 A;  1WYG A;  3S1D A;  2R2Z A;  2OAI A;  1QLU A;  2GQU A;  5D79 A;  2W54 A;  1W1L A;  2P4P A;  4PYT A;  2WDW A;  3EUB 3;  2R8D A;  5HHZ A;  1VAO A;  3NVV B;  2Q4W A;  3AMZ A;  2Y4G A;  1E8F A;  3W8W A; 
#chains in the Genus database with same CATH homology
 5ADZ A;  5L6G A;  2Y08 A;  2AXR A;  2MBR A;  2Y3R A;  5FXD A;  3PQB A;  3LAE A;  1MBT A;  3W8X A;  4HG0 A;  2Y3S A;  2BVH A;  4PVK A;  4EC3 A;  4BC9 A;  3D2D A;  3RJA A;  1W1R A;  1W1M A;  4PVE A;  3PM9 A;  2UUV A;  3FW9 A;  1W1O A;  2EXR A;  3VTE A;  1ZR6 A;  3NVW B;  1MBB A;  3NRZ B;  3TSH A;  3HSU A;  4UD8 A;  4PWB A;  2YVS A;  4PWC A;  1N5X A;  4OAL A;  3GSY A;  4PVH A;  3JS8 A;  3FWA A;  1W1S A;  3B9J B;  5G5G B;  1I19 A;  1AHZ A;  3S1C A;  1V97 A;  1AHU A;  3AN1 A;  1UXY A;  4JB1 A;  2P3H A;  3BW7 A;  1N60 C;  3NVZ B;  4ZOH B;  2VFV A;  3TX1 A;  1HSK A;  1AHV A;  4JAY A;  5FXF A;  1DIQ A;  3S1F A;  4BCA A;  1N62 C;  4DNS A;  1F0X A;  2W55 A;  1E8H A;  3C0P A;  4O95 A;  4XLO A;  1W1Q A;  3D2J A;  3DED A;  4BBY A;  5K8E A;  1FFU C;  1JRO A;  4MLA A;  5AWV A;  2UUU A;  5FXP A;  2GQT A;  1FIQ B;  3POP A;  2O3G A;  1DII A;  2BVG A;  1WVE A;  2QKN A;  1N5W C;  5I1W A;  5L6F A;  3TSJ A;  5FXE A;  5I1V A;  3W8Z A;  3FW8 A;  1W1K A;  4PZF A;  1WVF A;  1VDV A;  2VFS A;  3KJM A;  2QPM A;  2Q85 A;  3HRD C;  5AE2 A;  1T3Q C;  2VAO A;  3ETR B;  2VFU A;  1QLT A;  2W3S A;  5HMR A;  2I0K A;  3NVY B;  5AE1 A;  5G5H B;  3LLB A;  4ML8 A;  3I99 A;  5AE3 A;  2P13 A;  3D2H A;  3DQ0 A;  1RM6 B;  2E3T A;  3AM9 A;  2VFT A;  2BVF A;  4PVJ A;  1SB3 B;  2NQW A;  1FFV C;  1E8G A;  1DZN A;  1ZXI C;  1W1J A;  2PLI A;  1N61 C;  1E0Y A;  3SR6 B;  2IPI A;  3FW7 A;  3S1E A;  1JRP A;  2RK5 A;  2W3R A;  3RJ8 A;  4BC7 A;  2PLS A;  1N63 C;  2VFR A;  5HQX A;  3NS1 B;  1FO4 A;  1WYG A;  3S1D A;  2R2Z A;  2OAI A;  1QLU A;  2GQU A;  5D79 A;  2W54 A;  1W1L A;  2P4P A;  4PYT A;  2WDW A;  3EUB 3;  2R8D A;  5HHZ A;  1VAO A;  3NVV B;  2Q4W A;  3AMZ A;  2Y4G A;  1E8F A;  3W8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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