3FW8A

Structure of berberine bridge enzyme, c166a variant
Total Genus 169
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
b'DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw8A03
5HQXA 1DIIA 3EUB3 3TSJA 1QLUA 2AXRA 3S1CA 1ZR6A 4OALA 5AE1A 4O95A 1N61C 1QLTA 2Y08A 1FFUC 2BVHA 1E8HA 4PWBA 3BW7A 1AHZA 2BVFA 1N5XA 1DZNA 3FW8A 1DIQA 4BC7A 3HSUA 3PQBA 1F0XA 4BCAA 3NRZB 5HHZA 3W8XA 1JROA 3SR6B 3AN1A 1FIQB 2Y3RA 2W3RA 1W1OA 2GQTA 1W1RA 3KJMA 1WYGA 3FW7A 1V97A 1WVFA 5D79A 1W1JA 2I0KA 3B9JB 2VAOA 3PM9A 3DQ0A 4MLAA 1W1LA 3JS8A 4BC9A 2Q85A 1FFVC 4UD8A 1I19A 5L6FA 4PWCA 5AE3A 1N60C 3TSHA 5L6GA 2QPMA 3FWAA 1T3QC 2W55A 3RJ8A 2VFUA 3AMZA 3VTEA 1W1MA 3S1EA 5FXPA 4ZOHB 3D2HA 5I1VA 1N62C 5I1WA 4JAYA 1WVEA 1FO4A 5FXEA 1E8FA 1HSKA 3POPA 2E3TA 5AE2A 4PVJA 3ETRB 2Y3SA 4JB1A 5K8EA 1W1SA 5ADZA 2GQUA 1E8GA 2W3SA 2EXRA 1W1KA 4PVEA 3D2JA 1UXYA 3FW9A 4ML8A 2Q4WA 1W1QA 4EC3A 2VFTA 3RJAA 3GSYA 3I99A 5AWVA 1E0YA 1VDVA 2MBRA 1MBBA 4XLOA 4BBYA 2IPIA 2Y4GA 3TX1A 2QKNA 3NVZB 3AM9A 2VFVA 1N5WC 2VFSA 3S1DA 3D2DA 1VAOA 4PYTA 4PVHA 5FXDA 1AHVA 4PZFA 2BVGA 3C0PA 3W8ZA 2WDWA 1AHUA 2W54A 1ZXIC 5HMRA 3S1FA 2VFRA 4DNSA 3NS1B 3W8WA 4PVKA 1MBTA 1N63C 5FXFA
chains in the Genus database with same CATH superfamily
5HQXA 1DIIA 3EUB3 3TSJA 1QLUA 2AXRA 3S1CA 1ZR6A 4OALA 5AE1A 4O95A 1N61C 1QLTA 2Y08A 1FFUC 2BVHA 1E8HA 4PWBA 3BW7A 1AHZA 2BVFA 1N5XA 1DZNA 3FW8A 1DIQA 4BC7A 3LAEA 3HSUA 3PQBA 1F0XA 4BCAA 3NRZB 5HHZA 3W8XA 1JROA 5G5GB 3NVYB 3SR6B 3AN1A 1FIQB 2Y3RA 2W3RA 1W1OA 2P3HA 2GQTA 1W1RA 3KJMA 1WYGA 3FW7A 1V97A 1WVFA 5D79A 4HG0A 2O3GA 1W1JA 3HRDC 2I0KA 2NQWA 3B9JB 2VAOA 3PM9A 3DQ0A 4MLAA 3EJBB 1W1LA 3JS8A 4BC9A 3NVWB 2Q85A 1FFVC 4UD8A 1I19A 5L6FA 2PLSA 4PWCA 5AE3A 1N60C 1SB3B 3TSHA 1RM6B 5L6GA 2QPMA 2P13A 3FWAA 1T3QC 2W55A 3RJ8A 2VFUA 3NVVB 3AMZA 3VTEA 1W1MA 3S1EA 5FXPA 2RK5A 4ZOHB 3D2HA 2P4PA 5I1VA 1N62C 5I1WA 4JAYA 1WVEA 1FO4A 3DEDA 5FXEA 1E8FA 1HSKA 3POPA 2E3TA 2OAIA 5AE2A 4PVJA 3ETRB 2Y3SA 4JB1A 5K8EA 1W1SA 5ADZA 2GQUA 1E8GA 2UUUA 2W3SA 2EXRA 1W1KA 4PVEA 3D2JA 1UXYA 2YVSA 3FW9A 4ML8A 2R8DA 2Q4WA 1JRPA 2R2ZA 1W1QA 4EC3A 5G5HB 2VFTA 3RJAA 3GSYA 3I99A 5AWVA 1E0YA 1VDVA 2MBRA 1MBBA 4XLOA 4BBYA 2IPIA 2Y4GA 3TX1A 2QKNA 3NVZB 3AM9A 2VFVA 1N5WC 2VFSA 3S1DA 3D2DA 1VAOA 3EJEB 4PYTA 4PVHA 5FXDA 1AHVA 4PZFA 2BVGA 3C0PA 3W8ZA 2WDWA 1AHUA 2W54A 1ZXIC 3EJDB 3S1FA 5HMRA 2VFRA 4DNSA 2UUVA 3NS1B 3W8WA 3LLBA 4PVKA 1MBTA 2PLIA 1N63C 5FXFA
chains in the Genus database with same CATH topology
5HQXA 1DIIA 3EUB3 3TSJA 1QLUA 2AXRA 3S1CA 1ZR6A 4OALA 5AE1A 4O95A 1N61C 1QLTA 2Y08A 1FFUC 2BVHA 1E8HA 4PWBA 3BW7A 1AHZA 2BVFA 1N5XA 1DZNA 3FW8A 1DIQA 4BC7A 3LAEA 3HSUA 3PQBA 1F0XA 4BCAA 3NRZB 5HHZA 3W8XA 1JROA 5G5GB 3NVYB 3SR6B 3AN1A 1FIQB 2Y3RA 2W3RA 1W1OA 2P3HA 2GQTA 1W1RA 3KJMA 1WYGA 3FW7A 1V97A 1WVFA 5D79A 4HG0A 2O3GA 1W1JA 3HRDC 2I0KA 2NQWA 3B9JB 2VAOA 3PM9A 3DQ0A 4MLAA 1W1LA 3JS8A 4BC9A 3NVWB 2Q85A 1FFVC 4UD8A 1I19A 5L6FA 2PLSA 4PWCA 5AE3A 1N60C 1SB3B 3TSHA 1RM6B 5L6GA 2QPMA 2P13A 3FWAA 1T3QC 2W55A 3RJ8A 2VFUA 3NVVB 3AMZA 3VTEA 1W1MA 3S1EA 5FXPA 2RK5A 4ZOHB 3D2HA 2P4PA 5I1VA 1N62C 5I1WA 4JAYA 1WVEA 1FO4A 3DEDA 5FXEA 1E8FA 1HSKA 3POPA 2E3TA 2OAIA 5AE2A 4PVJA 3ETRB 2Y3SA 4JB1A 5K8EA 1W1SA 5ADZA 2GQUA 1E8GA 2UUUA 2W3SA 2EXRA 1W1KA 4PVEA 3D2JA 1UXYA 2YVSA 3FW9A 4ML8A 2R8DA 2Q4WA 1JRPA 2R2ZA 1W1QA 4EC3A 5G5HB 2VFTA 3RJAA 3GSYA 3I99A 5AWVA 1E0YA 1VDVA 2MBRA 1MBBA 4XLOA 4BBYA 2IPIA 2Y4GA 3TX1A 2QKNA 3NVZB 3AM9A 2VFVA 1N5WC 2VFSA 3S1DA 3D2DA 1VAOA 4PYTA 4PVHA 5FXDA 1AHVA 4PZFA 2BVGA 3C0PA 3W8ZA 2WDWA 1AHUA 2W54A 1ZXIC 5HMRA 3S1FA 2VFRA 4DNSA 2UUVA 3NS1B 3W8WA 3LLBA 4PVKA 1MBTA 2PLIA 1N63C 5FXFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HQX A;  1DII A;  3EUB 3;  3TSJ A;  1QLU A;  2AXR A;  3S1C A;  1ZR6 A;  4OAL A;  5AE1 A;  4O95 A;  1N61 C;  1QLT A;  2Y08 A;  1FFU C;  2BVH A;  1E8H A;  4PWB A;  3BW7 A;  1AHZ A;  2BVF A;  1N5X A;  1DZN A;  3FW8 A;  1DIQ A;  4BC7 A;  3HSU A;  3PQB A;  1F0X A;  4BCA A;  3NRZ B;  5HHZ A;  3W8X A;  1JRO A;  3SR6 B;  3AN1 A;  1FIQ B;  2Y3R A;  2W3R A;  1W1O A;  2GQT A;  1W1R A;  3KJM A;  1WYG A;  3FW7 A;  1V97 A;  1WVF A;  5D79 A;  1W1J A;  2I0K A;  3B9J B;  2VAO A;  3PM9 A;  3DQ0 A;  4MLA A;  1W1L A;  3JS8 A;  4BC9 A;  2Q85 A;  1FFV C;  4UD8 A;  1I19 A;  5L6F A;  4PWC A;  5AE3 A;  1N60 C;  3TSH A;  5L6G A;  2QPM A;  3FWA A;  1T3Q C;  2W55 A;  3RJ8 A;  2VFU A;  3AMZ A;  3VTE A;  1W1M A;  3S1E A;  5FXP A;  4ZOH B;  3D2H A;  5I1V A;  1N62 C;  5I1W A;  4JAY A;  1WVE A;  1FO4 A;  5FXE A;  1E8F A;  1HSK A;  3POP A;  2E3T A;  5AE2 A;  4PVJ A;  3ETR B;  2Y3S A;  4JB1 A;  5K8E A;  1W1S A;  5ADZ A;  2GQU A;  1E8G A;  2W3S A;  2EXR A;  1W1K A;  4PVE A;  3D2J A;  1UXY A;  3FW9 A;  4ML8 A;  2Q4W A;  1W1Q A;  4EC3 A;  2VFT A;  3RJA A;  3GSY A;  3I99 A;  5AWV A;  1E0Y A;  1VDV A;  2MBR A;  1MBB A;  4XLO A;  4BBY A;  2IPI A;  2Y4G A;  3TX1 A;  2QKN A;  3NVZ B;  3AM9 A;  2VFV A;  1N5W C;  2VFS A;  3S1D A;  3D2D A;  1VAO A;  4PYT A;  4PVH A;  5FXD A;  1AHV A;  4PZF A;  2BVG A;  3C0P A;  3W8Z A;  2WDW A;  1AHU A;  2W54 A;  1ZXI C;  5HMR A;  3S1F A;  2VFR A;  4DNS A;  3NS1 B;  3W8W A;  4PVK A;  1MBT A;  1N63 C;  5FXF A; 
#chains in the Genus database with same CATH topology
 5HQX A;  1DII A;  3EUB 3;  3TSJ A;  1QLU A;  2AXR A;  3S1C A;  1ZR6 A;  4OAL A;  5AE1 A;  4O95 A;  1N61 C;  1QLT A;  2Y08 A;  1FFU C;  2BVH A;  1E8H A;  4PWB A;  3BW7 A;  1AHZ A;  2BVF A;  1N5X A;  1DZN A;  3FW8 A;  1DIQ A;  4BC7 A;  3LAE A;  3HSU A;  3PQB A;  1F0X A;  4BCA A;  3NRZ B;  5HHZ A;  3W8X A;  1JRO A;  5G5G B;  3NVY B;  3SR6 B;  3AN1 A;  1FIQ B;  2Y3R A;  2W3R A;  1W1O A;  2P3H A;  2GQT A;  1W1R A;  3KJM A;  1WYG A;  3FW7 A;  1V97 A;  1WVF A;  5D79 A;  4HG0 A;  2O3G A;  1W1J A;  3HRD C;  2I0K A;  2NQW A;  3B9J B;  2VAO A;  3PM9 A;  3DQ0 A;  4MLA A;  3EJB B;  1W1L A;  3JS8 A;  4BC9 A;  3NVW B;  2Q85 A;  1FFV C;  4UD8 A;  1I19 A;  5L6F A;  2PLS A;  4PWC A;  5AE3 A;  1N60 C;  1SB3 B;  3TSH A;  1RM6 B;  5L6G A;  2QPM A;  2P13 A;  3FWA A;  1T3Q C;  2W55 A;  3RJ8 A;  2VFU A;  3NVV B;  3AMZ A;  3VTE A;  1W1M A;  3S1E A;  5FXP A;  2RK5 A;  4ZOH B;  3D2H A;  2P4P A;  5I1V A;  1N62 C;  5I1W A;  4JAY A;  1WVE A;  1FO4 A;  3DED A;  5FXE A;  1E8F A;  1HSK A;  3POP A;  2E3T A;  2OAI A;  5AE2 A;  4PVJ A;  3ETR B;  2Y3S A;  4JB1 A;  5K8E A;  1W1S A;  5ADZ A;  2GQU A;  1E8G A;  2UUU A;  2W3S A;  2EXR A;  1W1K A;  4PVE A;  3D2J A;  1UXY A;  2YVS A;  3FW9 A;  4ML8 A;  2R8D A;  2Q4W A;  1JRP A;  2R2Z A;  1W1Q A;  4EC3 A;  5G5H B;  2VFT A;  3RJA A;  3GSY A;  3I99 A;  5AWV A;  1E0Y A;  1VDV A;  2MBR A;  1MBB A;  4XLO A;  4BBY A;  2IPI A;  2Y4G A;  3TX1 A;  2QKN A;  3NVZ B;  3AM9 A;  2VFV A;  1N5W C;  2VFS A;  3S1D A;  3D2D A;  1VAO A;  3EJE B;  4PYT A;  4PVH A;  5FXD A;  1AHV A;  4PZF A;  2BVG A;  3C0P A;  3W8Z A;  2WDW A;  1AHU A;  2W54 A;  1ZXI C;  3EJD B;  3S1F A;  5HMR A;  2VFR A;  4DNS A;  2UUV A;  3NS1 B;  3W8W A;  3LLB A;  4PVK A;  1MBT A;  2PLI A;  1N63 C;  5FXF A; 
#chains in the Genus database with same CATH homology
 5HQX A;  1DII A;  3EUB 3;  3TSJ A;  1QLU A;  2AXR A;  3S1C A;  1ZR6 A;  4OAL A;  5AE1 A;  4O95 A;  1N61 C;  1QLT A;  2Y08 A;  1FFU C;  2BVH A;  1E8H A;  4PWB A;  3BW7 A;  1AHZ A;  2BVF A;  1N5X A;  1DZN A;  3FW8 A;  1DIQ A;  4BC7 A;  3LAE A;  3HSU A;  3PQB A;  1F0X A;  4BCA A;  3NRZ B;  5HHZ A;  3W8X A;  1JRO A;  5G5G B;  3NVY B;  3SR6 B;  3AN1 A;  1FIQ B;  2Y3R A;  2W3R A;  1W1O A;  2P3H A;  2GQT A;  1W1R A;  3KJM A;  1WYG A;  3FW7 A;  1V97 A;  1WVF A;  5D79 A;  4HG0 A;  2O3G A;  1W1J A;  3HRD C;  2I0K A;  2NQW A;  3B9J B;  2VAO A;  3PM9 A;  3DQ0 A;  4MLA A;  1W1L A;  3JS8 A;  4BC9 A;  3NVW B;  2Q85 A;  1FFV C;  4UD8 A;  1I19 A;  5L6F A;  2PLS A;  4PWC A;  5AE3 A;  1N60 C;  1SB3 B;  3TSH A;  1RM6 B;  5L6G A;  2QPM A;  2P13 A;  3FWA A;  1T3Q C;  2W55 A;  3RJ8 A;  2VFU A;  3NVV B;  3AMZ A;  3VTE A;  1W1M A;  3S1E A;  5FXP A;  2RK5 A;  4ZOH B;  3D2H A;  2P4P A;  5I1V A;  1N62 C;  5I1W A;  4JAY A;  1WVE A;  1FO4 A;  3DED A;  5FXE A;  1E8F A;  1HSK A;  3POP A;  2E3T A;  2OAI A;  5AE2 A;  4PVJ A;  3ETR B;  2Y3S A;  4JB1 A;  5K8E A;  1W1S A;  5ADZ A;  2GQU A;  1E8G A;  2UUU A;  2W3S A;  2EXR A;  1W1K A;  4PVE A;  3D2J A;  1UXY A;  2YVS A;  3FW9 A;  4ML8 A;  2R8D A;  2Q4W A;  1JRP A;  2R2Z A;  1W1Q A;  4EC3 A;  5G5H B;  2VFT A;  3RJA A;  3GSY A;  3I99 A;  5AWV A;  1E0Y A;  1VDV A;  2MBR A;  1MBB A;  4XLO A;  4BBY A;  2IPI A;  2Y4G A;  3TX1 A;  2QKN A;  3NVZ B;  3AM9 A;  2VFV A;  1N5W C;  2VFS A;  3S1D A;  3D2D A;  1VAO A;  4PYT A;  4PVH A;  5FXD A;  1AHV A;  4PZF A;  2BVG A;  3C0P A;  3W8Z A;  2WDW A;  1AHU A;  2W54 A;  1ZXI C;  5HMR A;  3S1F A;  2VFR A;  4DNS A;  2UUV A;  3NS1 B;  3W8W A;  3LLB A;  4PVK A;  1MBT A;  2PLI A;  1N63 C;  5FXF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...