3FW8A

Structure of berberine bridge enzyme, c166a variant
Total Genus 169
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
b'DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Reticuline oxidase
molecule tags Flavoprotein
source organism Eschscholzia californica
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw8A03
5L6GA 3D2JA 2Q85A 1W1KA 1N62C 5HMRA 1N61C 2I0KA 4ML8A 3SR6B 5K8EA 2W3RA 5AE2A 5D79A 3PQBA 1W1SA 1E8HA 1E8FA 2BVGA 3PM9A 1VDVA 4MLAA 3VTEA 3BW7A 4PVEA 3TX1A 4DNSA 4PZFA 3W8XA 3S1FA 2AXRA 2Y08A 4BCAA 2GQTA 3B9JB 4O95A 4PYTA 1WVFA 3W8WA 1UXYA 1N63C 3RJ8A 3C0PA 3EUB3 1FO4A 1MBBA 1N5WC 3D2HA 3W8ZA 5HHZA 3POPA 1E8GA 2BVHA 1JROA 2E3TA 2Y4GA 2VFTA 4PVHA 4BC9A 1FFUC 2GQUA 3AM9A 1W1RA 1ZXIC 1WVEA 4EC3A 2IPIA 1VAOA 1DZNA 1F0XA 3NRZB 2VAOA 2MBRA 1FIQB 5AE1A 1FFVC 2W3SA 1AHVA 3FW7A 1QLTA 2W55A 4BC7A 3NVZB 4BBYA 2VFSA 1E0YA 1V97A 1WYGA 5AWVA 3S1CA 1W1OA 1N5XA 1QLUA 3D2DA 2QKNA 2QPMA 2VFVA 3GSYA 4PVJA 3TSHA 3S1EA 2VFRA 3FW8A 5ADZA 1ZR6A 2Y3SA 1HSKA 4OALA 3RJAA 5I1WA 1W1MA 1I19A 5HQXA 4JB1A 5AE3A 4PWCA 3DQ0A 4ZOHB 2W54A 5FXEA 2VFUA 3TSJA 5FXDA 3HSUA 1MBTA 3JS8A 1W1QA 1N60C 1W1LA 1W1JA 3I99A 4JAYA 1AHZA 4UD8A 1DIIA 5L6FA 2Y3RA 3FWAA 2Q4WA 3KJMA 5FXPA 4PVKA 5I1VA 3FW9A 1DIQA 3ETRB 1AHUA 3S1DA 3AN1A 5FXFA 3NS1B 2BVFA 4PWBA 4XLOA 2EXRA 1T3QC 3AMZA 2WDWA
chains in the Genus database with same CATH superfamily
2R8DA 5L6GA 3D2JA 2Q85A 2RK5A 1W1KA 1N62C 5HMRA 2OAIA 1N61C 2I0KA 4ML8A 3SR6B 5K8EA 2W3RA 5AE2A 5D79A 3PQBA 2P13A 1W1SA 1E8HA 1E8FA 2BVGA 3EJEB 3PM9A 1VDVA 4MLAA 3VTEA 1RM6B 2PLIA 3BW7A 3NVWB 4PVEA 3TX1A 4DNSA 4PZFA 3W8XA 3S1FA 2AXRA 2Y08A 4BCAA 2GQTA 3B9JB 4O95A 4PYTA 1WVFA 3W8WA 1UXYA 1N63C 5G5GB 3RJ8A 3C0PA 3DEDA 3EUB3 1FO4A 1MBBA 1N5WC 3D2HA 3W8ZA 5HHZA 3POPA 1E8GA 2BVHA 1JROA 2E3TA 2Y4GA 2VFTA 2O3GA 4PVHA 4BC9A 1FFUC 2GQUA 3AM9A 1W1RA 1ZXIC 3NVVB 1WVEA 4EC3A 2IPIA 1VAOA 1DZNA 2R2ZA 1F0XA 2UUUA 3NRZB 2VAOA 2MBRA 1FIQB 5AE1A 1FFVC 1JRPA 2W3SA 2YVSA 5G5HB 2PLSA 1AHVA 3FW7A 1QLTA 2W55A 4HG0A 4BC7A 3NVZB 4BBYA 2VFSA 1E0YA 1V97A 1WYGA 5AWVA 3S1CA 1W1OA 1N5XA 1QLUA 3D2DA 2QKNA 2QPMA 2VFVA 3GSYA 4PVJA 3TSHA 3S1EA 2VFRA 3FW8A 5ADZA 1ZR6A 2Y3SA 1HSKA 4OALA 3RJAA 5I1WA 1W1MA 1I19A 5HQXA 4JB1A 5AE3A 4PWCA 3DQ0A 2P4PA 4ZOHB 2W54A 5FXEA 2NQWA 2P3HA 1SB3B 2VFUA 3TSJA 3NVYB 5FXDA 3HSUA 1MBTA 3JS8A 1W1QA 1N60C 2UUVA 1W1LA 1W1JA 3I99A 4JAYA 1AHZA 4UD8A 1DIIA 5L6FA 2Y3RA 3FWAA 2Q4WA 3KJMA 3EJDB 5FXPA 3LLBA 4PVKA 3LAEA 5I1VA 3EJBB 3FW9A 1DIQA 3ETRB 1AHUA 3S1DA 3AN1A 3HRDC 5FXFA 3NS1B 2BVFA 4PWBA 4XLOA 2EXRA 1T3QC 3AMZA 2WDWA
chains in the Genus database with same CATH topology
2R8DA 5L6GA 3D2JA 2Q85A 2RK5A 1W1KA 1N62C 5HMRA 2OAIA 1N61C 2I0KA 4ML8A 3SR6B 5K8EA 2W3RA 5AE2A 5D79A 3PQBA 2P13A 1W1SA 1E8HA 1E8FA 2BVGA 3PM9A 1VDVA 4MLAA 3VTEA 1RM6B 2PLIA 3BW7A 4PVEA 3NVWB 3TX1A 4DNSA 4PZFA 3W8XA 3S1FA 2AXRA 2Y08A 4BCAA 2GQTA 3B9JB 4O95A 4PYTA 1WVFA 3W8WA 1UXYA 1N63C 5G5GB 3RJ8A 3C0PA 3DEDA 3EUB3 1FO4A 1MBBA 1N5WC 3D2HA 3W8ZA 5HHZA 3POPA 1E8GA 2BVHA 1JROA 2E3TA 2Y4GA 2VFTA 2O3GA 4PVHA 4BC9A 1FFUC 2GQUA 3AM9A 1W1RA 1ZXIC 3NVVB 1WVEA 4EC3A 2IPIA 1VAOA 1DZNA 2R2ZA 1F0XA 2UUUA 3NRZB 2VAOA 2MBRA 1FIQB 5AE1A 1FFVC 1JRPA 2W3SA 2YVSA 5G5HB 2PLSA 1AHVA 3FW7A 1QLTA 2W55A 4HG0A 4BC7A 3NVZB 4BBYA 2VFSA 1E0YA 1V97A 1WYGA 5AWVA 3S1CA 1W1OA 1N5XA 1QLUA 3D2DA 2QKNA 2QPMA 2VFVA 3GSYA 4PVJA 3TSHA 3S1EA 2VFRA 3FW8A 5ADZA 1ZR6A 2Y3SA 1HSKA 4OALA 3RJAA 5I1WA 1W1MA 1I19A 5HQXA 4JB1A 5AE3A 4PWCA 3DQ0A 2P4PA 4ZOHB 2W54A 5FXEA 2NQWA 2P3HA 1SB3B 2VFUA 3TSJA 3NVYB 5FXDA 3HSUA 1MBTA 3JS8A 1W1QA 1N60C 2UUVA 1W1LA 1W1JA 3I99A 4JAYA 1AHZA 4UD8A 1DIIA 5L6FA 2Y3RA 3FWAA 2Q4WA 3KJMA 5FXPA 3LLBA 4PVKA 3LAEA 5I1VA 3FW9A 1DIQA 3ETRB 1AHUA 3S1DA 3AN1A 3HRDC 5FXFA 3NS1B 2BVFA 4PWBA 4XLOA 2EXRA 1T3QC 3AMZA 2WDWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6G A;  3D2J A;  2Q85 A;  1W1K A;  1N62 C;  5HMR A;  1N61 C;  2I0K A;  4ML8 A;  3SR6 B;  5K8E A;  2W3R A;  5AE2 A;  5D79 A;  3PQB A;  1W1S A;  1E8H A;  1E8F A;  2BVG A;  3PM9 A;  1VDV A;  4MLA A;  3VTE A;  3BW7 A;  4PVE A;  3TX1 A;  4DNS A;  4PZF A;  3W8X A;  3S1F A;  2AXR A;  2Y08 A;  4BCA A;  2GQT A;  3B9J B;  4O95 A;  4PYT A;  1WVF A;  3W8W A;  1UXY A;  1N63 C;  3RJ8 A;  3C0P A;  3EUB 3;  1FO4 A;  1MBB A;  1N5W C;  3D2H A;  3W8Z A;  5HHZ A;  3POP A;  1E8G A;  2BVH A;  1JRO A;  2E3T A;  2Y4G A;  2VFT A;  4PVH A;  4BC9 A;  1FFU C;  2GQU A;  3AM9 A;  1W1R A;  1ZXI C;  1WVE A;  4EC3 A;  2IPI A;  1VAO A;  1DZN A;  1F0X A;  3NRZ B;  2VAO A;  2MBR A;  1FIQ B;  5AE1 A;  1FFV C;  2W3S A;  1AHV A;  3FW7 A;  1QLT A;  2W55 A;  4BC7 A;  3NVZ B;  4BBY A;  2VFS A;  1E0Y A;  1V97 A;  1WYG A;  5AWV A;  3S1C A;  1W1O A;  1N5X A;  1QLU A;  3D2D A;  2QKN A;  2QPM A;  2VFV A;  3GSY A;  4PVJ A;  3TSH A;  3S1E A;  2VFR A;  3FW8 A;  5ADZ A;  1ZR6 A;  2Y3S A;  1HSK A;  4OAL A;  3RJA A;  5I1W A;  1W1M A;  1I19 A;  5HQX A;  4JB1 A;  5AE3 A;  4PWC A;  3DQ0 A;  4ZOH B;  2W54 A;  5FXE A;  2VFU A;  3TSJ A;  5FXD A;  3HSU A;  1MBT A;  3JS8 A;  1W1Q A;  1N60 C;  1W1L A;  1W1J A;  3I99 A;  4JAY A;  1AHZ A;  4UD8 A;  1DII A;  5L6F A;  2Y3R A;  3FWA A;  2Q4W A;  3KJM A;  5FXP A;  4PVK A;  5I1V A;  3FW9 A;  1DIQ A;  3ETR B;  1AHU A;  3S1D A;  3AN1 A;  5FXF A;  3NS1 B;  2BVF A;  4PWB A;  4XLO A;  2EXR A;  1T3Q C;  3AMZ A;  2WDW A; 
#chains in the Genus database with same CATH topology
 2R8D A;  5L6G A;  3D2J A;  2Q85 A;  2RK5 A;  1W1K A;  1N62 C;  5HMR A;  2OAI A;  1N61 C;  2I0K A;  4ML8 A;  3SR6 B;  5K8E A;  2W3R A;  5AE2 A;  5D79 A;  3PQB A;  2P13 A;  1W1S A;  1E8H A;  1E8F A;  2BVG A;  3EJE B;  3PM9 A;  1VDV A;  4MLA A;  3VTE A;  1RM6 B;  2PLI A;  3BW7 A;  3NVW B;  4PVE A;  3TX1 A;  4DNS A;  4PZF A;  3W8X A;  3S1F A;  2AXR A;  2Y08 A;  4BCA A;  2GQT A;  3B9J B;  4O95 A;  4PYT A;  1WVF A;  3W8W A;  1UXY A;  1N63 C;  5G5G B;  3RJ8 A;  3C0P A;  3DED A;  3EUB 3;  1FO4 A;  1MBB A;  1N5W C;  3D2H A;  3W8Z A;  5HHZ A;  3POP A;  1E8G A;  2BVH A;  1JRO A;  2E3T A;  2Y4G A;  2VFT A;  2O3G A;  4PVH A;  4BC9 A;  1FFU C;  2GQU A;  3AM9 A;  1W1R A;  1ZXI C;  3NVV B;  1WVE A;  4EC3 A;  2IPI A;  1VAO A;  1DZN A;  2R2Z A;  1F0X A;  2UUU A;  3NRZ B;  2VAO A;  2MBR A;  1FIQ B;  5AE1 A;  1FFV C;  1JRP A;  2W3S A;  2YVS A;  5G5H B;  2PLS A;  1AHV A;  3FW7 A;  1QLT A;  2W55 A;  4HG0 A;  4BC7 A;  3NVZ B;  4BBY A;  2VFS A;  1E0Y A;  1V97 A;  1WYG A;  5AWV A;  3S1C A;  1W1O A;  1N5X A;  1QLU A;  3D2D A;  2QKN A;  2QPM A;  2VFV A;  3GSY A;  4PVJ A;  3TSH A;  3S1E A;  2VFR A;  3FW8 A;  5ADZ A;  1ZR6 A;  2Y3S A;  1HSK A;  4OAL A;  3RJA A;  5I1W A;  1W1M A;  1I19 A;  5HQX A;  4JB1 A;  5AE3 A;  4PWC A;  3DQ0 A;  2P4P A;  4ZOH B;  2W54 A;  5FXE A;  2NQW A;  2P3H A;  1SB3 B;  2VFU A;  3TSJ A;  3NVY B;  5FXD A;  3HSU A;  1MBT A;  3JS8 A;  1W1Q A;  1N60 C;  2UUV A;  1W1L A;  1W1J A;  3I99 A;  4JAY A;  1AHZ A;  4UD8 A;  1DII A;  5L6F A;  2Y3R A;  3FWA A;  2Q4W A;  3KJM A;  3EJD B;  5FXP A;  3LLB A;  4PVK A;  3LAE A;  5I1V A;  3EJB B;  3FW9 A;  1DIQ A;  3ETR B;  1AHU A;  3S1D A;  3AN1 A;  3HRD C;  5FXF A;  3NS1 B;  2BVF A;  4PWB A;  4XLO A;  2EXR A;  1T3Q C;  3AMZ A;  2WDW A; 
#chains in the Genus database with same CATH homology
 2R8D A;  5L6G A;  3D2J A;  2Q85 A;  2RK5 A;  1W1K A;  1N62 C;  5HMR A;  2OAI A;  1N61 C;  2I0K A;  4ML8 A;  3SR6 B;  5K8E A;  2W3R A;  5AE2 A;  5D79 A;  3PQB A;  2P13 A;  1W1S A;  1E8H A;  1E8F A;  2BVG A;  3PM9 A;  1VDV A;  4MLA A;  3VTE A;  1RM6 B;  2PLI A;  3BW7 A;  4PVE A;  3NVW B;  3TX1 A;  4DNS A;  4PZF A;  3W8X A;  3S1F A;  2AXR A;  2Y08 A;  4BCA A;  2GQT A;  3B9J B;  4O95 A;  4PYT A;  1WVF A;  3W8W A;  1UXY A;  1N63 C;  5G5G B;  3RJ8 A;  3C0P A;  3DED A;  3EUB 3;  1FO4 A;  1MBB A;  1N5W C;  3D2H A;  3W8Z A;  5HHZ A;  3POP A;  1E8G A;  2BVH A;  1JRO A;  2E3T A;  2Y4G A;  2VFT A;  2O3G A;  4PVH A;  4BC9 A;  1FFU C;  2GQU A;  3AM9 A;  1W1R A;  1ZXI C;  3NVV B;  1WVE A;  4EC3 A;  2IPI A;  1VAO A;  1DZN A;  2R2Z A;  1F0X A;  2UUU A;  3NRZ B;  2VAO A;  2MBR A;  1FIQ B;  5AE1 A;  1FFV C;  1JRP A;  2W3S A;  2YVS A;  5G5H B;  2PLS A;  1AHV A;  3FW7 A;  1QLT A;  2W55 A;  4HG0 A;  4BC7 A;  3NVZ B;  4BBY A;  2VFS A;  1E0Y A;  1V97 A;  1WYG A;  5AWV A;  3S1C A;  1W1O A;  1N5X A;  1QLU A;  3D2D A;  2QKN A;  2QPM A;  2VFV A;  3GSY A;  4PVJ A;  3TSH A;  3S1E A;  2VFR A;  3FW8 A;  5ADZ A;  1ZR6 A;  2Y3S A;  1HSK A;  4OAL A;  3RJA A;  5I1W A;  1W1M A;  1I19 A;  5HQX A;  4JB1 A;  5AE3 A;  4PWC A;  3DQ0 A;  2P4P A;  4ZOH B;  2W54 A;  5FXE A;  2NQW A;  2P3H A;  1SB3 B;  2VFU A;  3TSJ A;  3NVY B;  5FXD A;  3HSU A;  1MBT A;  3JS8 A;  1W1Q A;  1N60 C;  2UUV A;  1W1L A;  1W1J A;  3I99 A;  4JAY A;  1AHZ A;  4UD8 A;  1DII A;  5L6F A;  2Y3R A;  3FWA A;  2Q4W A;  3KJM A;  5FXP A;  3LLB A;  4PVK A;  3LAE A;  5I1V A;  3FW9 A;  1DIQ A;  3ETR B;  1AHU A;  3S1D A;  3AN1 A;  3HRD C;  5FXF A;  3NS1 B;  2BVF A;  4PWB A;  4XLO A;  2EXR A;  1T3Q C;  3AMZ A;  2WDW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...