3FWAA

Structure of berberine bridge enzyme, c166a variant in complex with (s)-reticuline
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
497
structure length
497
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoprotein
source organism Eschscholzia californica
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
molecule keywords Reticuline oxidase
total genus 169
structure length 497
sequence length 497
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fwaA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fwaA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fwaA03
4UD8A 5K8EA 4O95A 3EUB3 5D79A 1FIQB 3S1CA 5AE1A 2EXRA 1T3QC 1DIQA 1HSKA 1N62C 1AHVA 1V97A 3D2HA 1N60C 2QKNA 2E3TA 1FFUC 2W55A 4ZOHB 4PVJA 2AXRA 1W1RA 1N5WC 1QLTA 1MBBA 2VFUA 4BC7A 3SR6B 2Y08A 1W1MA 3D2DA 3W8XA 2GQUA 3PQBA 3ETRB 5AE2A 1VAOA 2WDWA 1W1LA 4JB1A 3GSYA 2Q4WA 5I1VA 5HMRA 2VFVA 3D2JA 5ADZA 2MBRA 5FXEA 2GQTA 1FFVC 1N63C 2BVHA 4OALA 1W1KA 1WVFA 1WVEA 2I0KA 1E0YA 3I99A 2Q85A 3AM9A 5AWVA 3AN1A 5AE3A 3JS8A 1E8HA 1E8GA 4PYTA 4BBYA 4PVHA 3B9JB 2W54A 4EC3A 3TSJA 5FXDA 1DZNA 5HQXA 1WYGA 2VFRA 2Y3RA 5I1WA 5L6GA 3AMZA 1FO4A 3DQ0A 3TX1A 5HHZA 3PM9A 1AHZA 3FWAA 2VAOA 1E8FA 4XLOA 4PVKA 4BC9A 4DNSA 4ML8A 3BW7A 4PWCA 3KJMA 1ZR6A 3POPA 2QPMA 3FW9A 1VDVA 1W1SA 2VFTA 5FXFA 1N5XA 1W1JA 3S1EA 3NRZB 3VTEA 4MLAA 3FW7A 1ZXIC 2BVGA 1MBTA 1AHUA 2W3SA 3TSHA 2VFSA 3W8ZA 2BVFA 3NS1B 4PZFA 4PWBA 3FW8A 3S1FA 1DIIA 5FXPA 2Y4GA 3HSUA 1QLUA 3S1DA 1F0XA 1JROA 1W1QA 1I19A 2W3RA 3NVZB 4BCAA 3W8WA 4PVEA 2IPIA 3C0PA 5L6FA 1UXYA 3RJAA 1W1OA 4JAYA 3RJ8A 2Y3SA 1N61C
chains in the Genus database with same CATH superfamily
4UD8A 5K8EA 4O95A 3EUB3 5D79A 1FIQB 3S1CA 5AE1A 2EXRA 1T3QC 1DIQA 1HSKA 3LAEA 1N62C 1AHVA 1V97A 2P4PA 3D2HA 1N60C 3LLBA 2QKNA 2E3TA 1FFUC 2W55A 4ZOHB 3HRDC 4PVJA 2AXRA 1W1RA 2P3HA 1N5WC 1QLTA 1MBBA 5G5HB 2VFUA 2O3GA 4BC7A 3SR6B 2Y08A 1W1MA 3D2DA 2R8DA 3W8XA 2GQUA 3PQBA 3ETRB 5AE2A 1VAOA 2WDWA 1W1LA 4JB1A 3GSYA 2Q4WA 5I1VA 5HMRA 2VFVA 3D2JA 5ADZA 2MBRA 5FXEA 2GQTA 1FFVC 1N63C 2BVHA 4OALA 2UUUA 1W1KA 1WVFA 1WVEA 2I0KA 1E0YA 3I99A 2Q85A 3AM9A 5AWVA 3AN1A 2PLSA 5AE3A 3JS8A 1E8HA 1E8GA 4PYTA 4BBYA 4PVHA 3B9JB 3NVWB 2W54A 4EC3A 3TSJA 5FXDA 2RK5A 1DZNA 3DEDA 5HQXA 3NVYB 1WYGA 2UUVA 2VFRA 2Y3RA 5G5GB 5I1WA 5L6GA 3AMZA 1FO4A 2R2ZA 3DQ0A 3TX1A 5HHZA 3PM9A 1AHZA 3FWAA 2VAOA 1E8FA 4XLOA 4PVKA 4BC9A 4DNSA 4ML8A 3BW7A 3NVVB 4PWCA 3KJMA 1ZR6A 2PLIA 3POPA 2QPMA 3FW9A 1VDVA 2YVSA 1W1SA 2VFTA 5FXFA 1N5XA 1W1JA 3S1EA 1RM6B 3NRZB 3VTEA 4MLAA 3FW7A 1ZXIC 2BVGA 1MBTA 1AHUA 3EJEB 2W3SA 3TSHA 2VFSA 3W8ZA 2BVFA 1JRPA 3EJBB 3EJDB 3NS1B 4PZFA 2OAIA 4PWBA 3FW8A 3S1FA 1SB3B 1DIIA 5FXPA 2Y4GA 3HSUA 1QLUA 3S1DA 1F0XA 1JROA 1W1QA 1I19A 2W3RA 3NVZB 4BCAA 3W8WA 4PVEA 2IPIA 2NQWA 3C0PA 5L6FA 1UXYA 4HG0A 3RJAA 2P13A 1W1OA 4JAYA 3RJ8A 2Y3SA 1N61C
chains in the Genus database with same CATH topology
4UD8A 5K8EA 4O95A 3EUB3 5D79A 1FIQB 3S1CA 5AE1A 2EXRA 1T3QC 1DIQA 1HSKA 3LAEA 1N62C 1AHVA 1V97A 2P4PA 3D2HA 1N60C 3LLBA 2QKNA 2E3TA 1FFUC 2W55A 4ZOHB 3HRDC 4PVJA 2AXRA 1W1RA 2P3HA 1N5WC 1QLTA 1MBBA 5G5HB 2VFUA 2O3GA 4BC7A 3SR6B 2Y08A 1W1MA 3D2DA 2R8DA 3W8XA 2GQUA 3PQBA 3ETRB 5AE2A 1VAOA 2WDWA 1W1LA 4JB1A 3GSYA 2Q4WA 5I1VA 5HMRA 2VFVA 3D2JA 5ADZA 2MBRA 5FXEA 2GQTA 1FFVC 1N63C 2BVHA 4OALA 2UUUA 1W1KA 1WVFA 1WVEA 2I0KA 1E0YA 3I99A 2Q85A 3AM9A 5AWVA 3AN1A 2PLSA 5AE3A 3JS8A 1E8HA 1E8GA 4PYTA 4BBYA 4PVHA 3B9JB 3NVWB 2W54A 4EC3A 3TSJA 5FXDA 2RK5A 1DZNA 3DEDA 5HQXA 3NVYB 1WYGA 2UUVA 2VFRA 2Y3RA 5G5GB 5I1WA 5L6GA 3AMZA 1FO4A 2R2ZA 3DQ0A 3TX1A 5HHZA 3PM9A 1AHZA 3FWAA 2VAOA 1E8FA 4XLOA 4PVKA 4BC9A 4DNSA 4ML8A 3BW7A 4PWCA 3NVVB 3KJMA 1ZR6A 2PLIA 3POPA 2QPMA 3FW9A 1VDVA 2YVSA 1W1SA 2VFTA 5FXFA 1N5XA 1W1JA 3S1EA 1RM6B 3NRZB 3VTEA 4MLAA 3FW7A 1ZXIC 2BVGA 1MBTA 1AHUA 2W3SA 3TSHA 2VFSA 3W8ZA 2BVFA 1JRPA 3NS1B 4PZFA 2OAIA 4PWBA 3FW8A 3S1FA 1SB3B 1DIIA 5FXPA 2Y4GA 3HSUA 1QLUA 3S1DA 1F0XA 1JROA 1W1QA 1I19A 2W3RA 3NVZB 4BCAA 3W8WA 4PVEA 2IPIA 2NQWA 3C0PA 5L6FA 1UXYA 4HG0A 3RJAA 2P13A 1W1OA 4JAYA 3RJ8A 2Y3SA 1N61C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UD8 A;  5K8E A;  4O95 A;  3EUB 3;  5D79 A;  1FIQ B;  3S1C A;  5AE1 A;  2EXR A;  1T3Q C;  1DIQ A;  1HSK A;  1N62 C;  1AHV A;  1V97 A;  3D2H A;  1N60 C;  2QKN A;  2E3T A;  1FFU C;  2W55 A;  4ZOH B;  4PVJ A;  2AXR A;  1W1R A;  1N5W C;  1QLT A;  1MBB A;  2VFU A;  4BC7 A;  3SR6 B;  2Y08 A;  1W1M A;  3D2D A;  3W8X A;  2GQU A;  3PQB A;  3ETR B;  5AE2 A;  1VAO A;  2WDW A;  1W1L A;  4JB1 A;  3GSY A;  2Q4W A;  5I1V A;  5HMR A;  2VFV A;  3D2J A;  5ADZ A;  2MBR A;  5FXE A;  2GQT A;  1FFV C;  1N63 C;  2BVH A;  4OAL A;  1W1K A;  1WVF A;  1WVE A;  2I0K A;  1E0Y A;  3I99 A;  2Q85 A;  3AM9 A;  5AWV A;  3AN1 A;  5AE3 A;  3JS8 A;  1E8H A;  1E8G A;  4PYT A;  4BBY A;  4PVH A;  3B9J B;  2W54 A;  4EC3 A;  3TSJ A;  5FXD A;  1DZN A;  5HQX A;  1WYG A;  2VFR A;  2Y3R A;  5I1W A;  5L6G A;  3AMZ A;  1FO4 A;  3DQ0 A;  3TX1 A;  5HHZ A;  3PM9 A;  1AHZ A;  3FWA A;  2VAO A;  1E8F A;  4XLO A;  4PVK A;  4BC9 A;  4DNS A;  4ML8 A;  3BW7 A;  4PWC A;  3KJM A;  1ZR6 A;  3POP A;  2QPM A;  3FW9 A;  1VDV A;  1W1S A;  2VFT A;  5FXF A;  1N5X A;  1W1J A;  3S1E A;  3NRZ B;  3VTE A;  4MLA A;  3FW7 A;  1ZXI C;  2BVG A;  1MBT A;  1AHU A;  2W3S A;  3TSH A;  2VFS A;  3W8Z A;  2BVF A;  3NS1 B;  4PZF A;  4PWB A;  3FW8 A;  3S1F A;  1DII A;  5FXP A;  2Y4G A;  3HSU A;  1QLU A;  3S1D A;  1F0X A;  1JRO A;  1W1Q A;  1I19 A;  2W3R A;  3NVZ B;  4BCA A;  3W8W A;  4PVE A;  2IPI A;  3C0P A;  5L6F A;  1UXY A;  3RJA A;  1W1O A;  4JAY A;  3RJ8 A;  2Y3S A;  1N61 C; 
#chains in the Genus database with same CATH topology
 4UD8 A;  5K8E A;  4O95 A;  3EUB 3;  5D79 A;  1FIQ B;  3S1C A;  5AE1 A;  2EXR A;  1T3Q C;  1DIQ A;  1HSK A;  3LAE A;  1N62 C;  1AHV A;  1V97 A;  2P4P A;  3D2H A;  1N60 C;  3LLB A;  2QKN A;  2E3T A;  1FFU C;  2W55 A;  4ZOH B;  3HRD C;  4PVJ A;  2AXR A;  1W1R A;  2P3H A;  1N5W C;  1QLT A;  1MBB A;  5G5H B;  2VFU A;  2O3G A;  4BC7 A;  3SR6 B;  2Y08 A;  1W1M A;  3D2D A;  2R8D A;  3W8X A;  2GQU A;  3PQB A;  3ETR B;  5AE2 A;  1VAO A;  2WDW A;  1W1L A;  4JB1 A;  3GSY A;  2Q4W A;  5I1V A;  5HMR A;  2VFV A;  3D2J A;  5ADZ A;  2MBR A;  5FXE A;  2GQT A;  1FFV C;  1N63 C;  2BVH A;  4OAL A;  2UUU A;  1W1K A;  1WVF A;  1WVE A;  2I0K A;  1E0Y A;  3I99 A;  2Q85 A;  3AM9 A;  5AWV A;  3AN1 A;  2PLS A;  5AE3 A;  3JS8 A;  1E8H A;  1E8G A;  4PYT A;  4BBY A;  4PVH A;  3B9J B;  3NVW B;  2W54 A;  4EC3 A;  3TSJ A;  5FXD A;  2RK5 A;  1DZN A;  3DED A;  5HQX A;  3NVY B;  1WYG A;  2UUV A;  2VFR A;  2Y3R A;  5G5G B;  5I1W A;  5L6G A;  3AMZ A;  1FO4 A;  2R2Z A;  3DQ0 A;  3TX1 A;  5HHZ A;  3PM9 A;  1AHZ A;  3FWA A;  2VAO A;  1E8F A;  4XLO A;  4PVK A;  4BC9 A;  4DNS A;  4ML8 A;  3BW7 A;  3NVV B;  4PWC A;  3KJM A;  1ZR6 A;  2PLI A;  3POP A;  2QPM A;  3FW9 A;  1VDV A;  2YVS A;  1W1S A;  2VFT A;  5FXF A;  1N5X A;  1W1J A;  3S1E A;  1RM6 B;  3NRZ B;  3VTE A;  4MLA A;  3FW7 A;  1ZXI C;  2BVG A;  1MBT A;  1AHU A;  3EJE B;  2W3S A;  3TSH A;  2VFS A;  3W8Z A;  2BVF A;  1JRP A;  3EJB B;  3EJD B;  3NS1 B;  4PZF A;  2OAI A;  4PWB A;  3FW8 A;  3S1F A;  1SB3 B;  1DII A;  5FXP A;  2Y4G A;  3HSU A;  1QLU A;  3S1D A;  1F0X A;  1JRO A;  1W1Q A;  1I19 A;  2W3R A;  3NVZ B;  4BCA A;  3W8W A;  4PVE A;  2IPI A;  2NQW A;  3C0P A;  5L6F A;  1UXY A;  4HG0 A;  3RJA A;  2P13 A;  1W1O A;  4JAY A;  3RJ8 A;  2Y3S A;  1N61 C; 
#chains in the Genus database with same CATH homology
 4UD8 A;  5K8E A;  4O95 A;  3EUB 3;  5D79 A;  1FIQ B;  3S1C A;  5AE1 A;  2EXR A;  1T3Q C;  1DIQ A;  1HSK A;  3LAE A;  1N62 C;  1AHV A;  1V97 A;  2P4P A;  3D2H A;  1N60 C;  3LLB A;  2QKN A;  2E3T A;  1FFU C;  2W55 A;  4ZOH B;  3HRD C;  4PVJ A;  2AXR A;  1W1R A;  2P3H A;  1N5W C;  1QLT A;  1MBB A;  5G5H B;  2VFU A;  2O3G A;  4BC7 A;  3SR6 B;  2Y08 A;  1W1M A;  3D2D A;  2R8D A;  3W8X A;  2GQU A;  3PQB A;  3ETR B;  5AE2 A;  1VAO A;  2WDW A;  1W1L A;  4JB1 A;  3GSY A;  2Q4W A;  5I1V A;  5HMR A;  2VFV A;  3D2J A;  5ADZ A;  2MBR A;  5FXE A;  2GQT A;  1FFV C;  1N63 C;  2BVH A;  4OAL A;  2UUU A;  1W1K A;  1WVF A;  1WVE A;  2I0K A;  1E0Y A;  3I99 A;  2Q85 A;  3AM9 A;  5AWV A;  3AN1 A;  2PLS A;  5AE3 A;  3JS8 A;  1E8H A;  1E8G A;  4PYT A;  4BBY A;  4PVH A;  3B9J B;  3NVW B;  2W54 A;  4EC3 A;  3TSJ A;  5FXD A;  2RK5 A;  1DZN A;  3DED A;  5HQX A;  3NVY B;  1WYG A;  2UUV A;  2VFR A;  2Y3R A;  5G5G B;  5I1W A;  5L6G A;  3AMZ A;  1FO4 A;  2R2Z A;  3DQ0 A;  3TX1 A;  5HHZ A;  3PM9 A;  1AHZ A;  3FWA A;  2VAO A;  1E8F A;  4XLO A;  4PVK A;  4BC9 A;  4DNS A;  4ML8 A;  3BW7 A;  4PWC A;  3NVV B;  3KJM A;  1ZR6 A;  2PLI A;  3POP A;  2QPM A;  3FW9 A;  1VDV A;  2YVS A;  1W1S A;  2VFT A;  5FXF A;  1N5X A;  1W1J A;  3S1E A;  1RM6 B;  3NRZ B;  3VTE A;  4MLA A;  3FW7 A;  1ZXI C;  2BVG A;  1MBT A;  1AHU A;  2W3S A;  3TSH A;  2VFS A;  3W8Z A;  2BVF A;  1JRP A;  3NS1 B;  4PZF A;  2OAI A;  4PWB A;  3FW8 A;  3S1F A;  1SB3 B;  1DII A;  5FXP A;  2Y4G A;  3HSU A;  1QLU A;  3S1D A;  1F0X A;  1JRO A;  1W1Q A;  1I19 A;  2W3R A;  3NVZ B;  4BCA A;  3W8W A;  4PVE A;  2IPI A;  2NQW A;  3C0P A;  5L6F A;  1UXY A;  4HG0 A;  3RJA A;  2P13 A;  1W1O A;  4JAY A;  3RJ8 A;  2Y3S A;  1N61 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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