3FWSA

Crystal structure of the cbs domains from the bacillus subtilis ccpn repressor complexed with appnp, phosphate and magnesium ions
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
145
structure length
145
Chain Sequence
TQLLADKLKKLQVKDFQSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords YqzB protein
publication title Ligand recognition by the energy sensor domain of the CcpN repressor
rcsb
source organism Bacillus subtilis
total genus 41
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3fwsA00
4P1OA 4P1GA 3FWSA 2EF7A 2YVYA 2RC3A 2YZQA 4FRYA 1Y5HA 2YVZA 3LFZA 2UV6A 3LQNA 3HF7A 3KPCA 3KPDA 3FV6A 3L31A 3FWRA 2YVXA 3K6EA 2YZIA 5MMZA 1O50A 5K22B 4IY0A 4DQWA 2RIFA 2PFIA 2ZY9A 3OI8A 4ESYB 2UV7A 1PBJA 2OOYE 2QH1A 4COOA 3PC3A 4GQWA 2P9MA 3LV9A 3SL7A 5IIPA 3OCMA 3TE5C 1PVMA 2O16A 4IY4A 5KS7A 2RIHA 4IYSA 4UUUA 2UV4A 4O9KA 2QRDE 1YAVA 4PCUA 2QRCE 4GQYA 2QREE 3PC4A 2OOXE 2QLVC 2OUXA 4L27A 3FNAA 4FXSA 4ESYA 3KXRA 3ORGA 2EMQA 5K24C 2NYEA 2UV5A 3I8NA 3GBYA 3KH5A 2QR1E 3LHHA 4IY2A 3L2BA 4HG0A 5K25C 4NOCA 3PC2A 4GQVA 4IY3A 4L3VA 3K2VA 3T4NC 2NYCA 1XKFA 3FHMA 3TDHC 3DDJA 3KPBA 2D4ZA 4L28A 5LXQA 3OCOA 4L0DA 5K23C
chains in the Genus database with same CATH superfamily
4P1OA 4P1GA 3FWSA 2EF7A 2YVYA 2RC3A 2YZQA 4FRYA 1Y5HA 2YVZA 3LFZA 2UV6A 3LQNA 3HF7A 3KPCA 3KPDA 3FV6A 3L31A 3FWRA 2YVXA 3K6EA 2YZIA 5MMZA 1O50A 5K22B 4IY0A 4DQWA 2RIFA 2PFIA 2ZY9A 3OI8A 4ESYB 2UV7A 1PBJA 2OOYE 2QH1A 4COOA 3PC3A 4GQWA 2P9MA 3LV9A 3SL7A 5IIPA 3OCMA 3TE5C 1PVMA 2O16A 4IY4A 5KS7A 2RIHA 4IYSA 4UUUA 2UV4A 4O9KA 2QRDE 1YAVA 4PCUA 2QRCE 4GQYA 2QREE 3PC4A 2OOXE 2QLVC 2OUXA 4L27A 3FNAA 2JA3A 4FXSA 4ESYA 3KXRA 3ORGA 2EMQA 2J9LA 5K24C 2NYEA 2UV5A 3I8NA 3GBYA 3KH5A 2QR1E 3LHHA 4IY2A 3L2BA 4HG0A 5K25C 4NOCA 3PC2A 4GQVA 4IY3A 4L3VA 3K2VA 3T4NC 2NYCA 1XKFA 3FHMA 3TDHC 3DDJA 3KPBA 2D4ZA 4L28A 5LXQA 3OCOA 4L0DA 5K23C
chains in the Genus database with same CATH topology
4P1OA 4P1GA 3FWSA 2EF7A 2YVYA 2RC3A 2YZQA 4FRYA 1Y5HA 2YVZA 3LFZA 2UV6A 3LQNA 3HF7A 3KPCA 3KPDA 3FV6A 3L31A 3FWRA 2YVXA 3K6EA 2YZIA 5MMZA 1O50A 5K22B 4IY0A 4DQWA 2RIFA 2PFIA 2ZY9A 3OI8A 4ESYB 2UV7A 1PBJA 2OOYE 2QH1A 4COOA 3PC3A 4GQWA 2P9MA 3LV9A 3SL7A 5IIPA 3OCMA 3TE5C 1PVMA 2O16A 4IY4A 5KS7A 2RIHA 4IYSA 4UUUA 2UV4A 4O9KA 2QRDE 1YAVA 4PCUA 2QRCE 4GQYA 2QREE 3PC4A 2OOXE 2QLVC 2OUXA 4L27A 3FNAA 2JA3A 4FXSA 4ESYA 3KXRA 3ORGA 2EMQA 2J9LA 5K24C 2NYEA 2UV5A 3I8NA 3GBYA 3KH5A 2QR1E 3LHHA 4IY2A 3L2BA 4HG0A 5K25C 4NOCA 3PC2A 4GQVA 4IY3A 4L3VA 3K2VA 3T4NC 2NYCA 1XKFA 3FHMA 3TDHC 3DDJA 3KPBA 2D4ZA 4L28A 5LXQA 3OCOA 4L0DA 5K23C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P1O A;  4P1G A;  3FWS A;  2EF7 A;  2YVY A;  2RC3 A;  2YZQ A;  4FRY A;  1Y5H A;  2YVZ A;  3LFZ A;  2UV6 A;  3LQN A;  3HF7 A;  3KPC A;  3KPD A;  3FV6 A;  3L31 A;  3FWR A;  2YVX A;  3K6E A;  2YZI A;  5MMZ A;  1O50 A;  5K22 B;  4IY0 A;  4DQW A;  2RIF A;  2PFI A;  2ZY9 A;  3OI8 A;  4ESY B;  2UV7 A;  1PBJ A;  2OOY E;  2QH1 A;  4COO A;  3PC3 A;  4GQW A;  2P9M A;  3LV9 A;  3SL7 A;  5IIP A;  3OCM A;  3TE5 C;  1PVM A;  2O16 A;  4IY4 A;  5KS7 A;  2RIH A;  4IYS A;  4UUU A;  2UV4 A;  4O9K A;  2QRD E;  1YAV A;  4PCU A;  2QRC E;  4GQY A;  2QRE E;  3PC4 A;  2OOX E;  2QLV C;  2OUX A;  4L27 A;  3FNA A;  4FXS A;  4ESY A;  3KXR A;  3ORG A;  2EMQ A;  5K24 C;  2NYE A;  2UV5 A;  3I8N A;  3GBY A;  3KH5 A;  2QR1 E;  3LHH A;  4IY2 A;  3L2B A;  4HG0 A;  5K25 C;  4NOC A;  3PC2 A;  4GQV A;  4IY3 A;  4L3V A;  3K2V A;  3T4N C;  2NYC A;  1XKF A;  3FHM A;  3TDH C;  3DDJ A;  3KPB A;  2D4Z A;  4L28 A;  5LXQ A;  3OCO A;  4L0D A;  5K23 C; 
#chains in the Genus database with same CATH topology
 4P1O A;  4P1G A;  3FWS A;  2EF7 A;  2YVY A;  2RC3 A;  2YZQ A;  4FRY A;  1Y5H A;  2YVZ A;  3LFZ A;  2UV6 A;  3LQN A;  3HF7 A;  3KPC A;  3KPD A;  3FV6 A;  3L31 A;  3FWR A;  2YVX A;  3K6E A;  2YZI A;  5MMZ A;  1O50 A;  5K22 B;  4IY0 A;  4DQW A;  2RIF A;  2PFI A;  2ZY9 A;  3OI8 A;  4ESY B;  2UV7 A;  1PBJ A;  2OOY E;  2QH1 A;  4COO A;  3PC3 A;  4GQW A;  2P9M A;  3LV9 A;  3SL7 A;  5IIP A;  3OCM A;  3TE5 C;  1PVM A;  2O16 A;  4IY4 A;  5KS7 A;  2RIH A;  4IYS A;  4UUU A;  2UV4 A;  4O9K A;  2QRD E;  1YAV A;  4PCU A;  2QRC E;  4GQY A;  2QRE E;  3PC4 A;  2OOX E;  2QLV C;  2OUX A;  4L27 A;  3FNA A;  2JA3 A;  4FXS A;  4ESY A;  3KXR A;  3ORG A;  2EMQ A;  2J9L A;  5K24 C;  2NYE A;  2UV5 A;  3I8N A;  3GBY A;  3KH5 A;  2QR1 E;  3LHH A;  4IY2 A;  3L2B A;  4HG0 A;  5K25 C;  4NOC A;  3PC2 A;  4GQV A;  4IY3 A;  4L3V A;  3K2V A;  3T4N C;  2NYC A;  1XKF A;  3FHM A;  3TDH C;  3DDJ A;  3KPB A;  2D4Z A;  4L28 A;  5LXQ A;  3OCO A;  4L0D A;  5K23 C; 
#chains in the Genus database with same CATH homology
 4P1O A;  4P1G A;  3FWS A;  2EF7 A;  2YVY A;  2RC3 A;  2YZQ A;  4FRY A;  1Y5H A;  2YVZ A;  3LFZ A;  2UV6 A;  3LQN A;  3HF7 A;  3KPC A;  3KPD A;  3FV6 A;  3L31 A;  3FWR A;  2YVX A;  3K6E A;  2YZI A;  5MMZ A;  1O50 A;  5K22 B;  4IY0 A;  4DQW A;  2RIF A;  2PFI A;  2ZY9 A;  3OI8 A;  4ESY B;  2UV7 A;  1PBJ A;  2OOY E;  2QH1 A;  4COO A;  3PC3 A;  4GQW A;  2P9M A;  3LV9 A;  3SL7 A;  5IIP A;  3OCM A;  3TE5 C;  1PVM A;  2O16 A;  4IY4 A;  5KS7 A;  2RIH A;  4IYS A;  4UUU A;  2UV4 A;  4O9K A;  2QRD E;  1YAV A;  4PCU A;  2QRC E;  4GQY A;  2QRE E;  3PC4 A;  2OOX E;  2QLV C;  2OUX A;  4L27 A;  3FNA A;  2JA3 A;  4FXS A;  4ESY A;  3KXR A;  3ORG A;  2EMQ A;  2J9L A;  5K24 C;  2NYE A;  2UV5 A;  3I8N A;  3GBY A;  3KH5 A;  2QR1 E;  3LHH A;  4IY2 A;  3L2B A;  4HG0 A;  5K25 C;  4NOC A;  3PC2 A;  4GQV A;  4IY3 A;  4L3V A;  3K2V A;  3T4N C;  2NYC A;  1XKF A;  3FHM A;  3TDH C;  3DDJ A;  3KPB A;  2D4Z A;  4L28 A;  5LXQ A;  3OCO A;  4L0D A;  5K23 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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