3G0VA

Crystal structure of the c-terminal domain from the rous sarcoma virus capsid protein: mutant d179a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
76
structure length
76
Chain Sequence
GPWADIMQGPSESFVDFANRLIKAVEGSALPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Rous sarcoma virus
publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
molecule keywords Gag polyprotein
total genus 25
structure length 76
sequence length 76
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g0vA00
3P05A 2M8NA 1AUMA 3LRYA 1E6JP 1A8OA 3DS2A 3DS0A 3G26A 4M0IA 1D1DA 5HGNA 2XV6A 3DS4A 3G29A 2L6EA 3DS3A 4U0EA 4XFXA 3G28A 4QNBA 3DS5A 4XROA 4COPA 1A43A 2ONTA 3DTJA 2JO0A 4PH1A 4U0FA 3NTEA 4PH0A 3H4EA 3G1IA 2M8PA 3VRLC 3DS1A 4COCA 4U0AA 5JPAA 4WYMA 2BUOA 4U0CA 2XT1A 2EIAA 3G21A 1BAJA 3G1GA 4U0DA 4XFZA 5HGLA 3MGEA 3DPHA 4XRQA 4IPYA 4XFYA 2LF4A 2JYLA 1QRJA 2JYGA 2KODA 4U0BA 5DCKA 5HGMA 5HGOA 1EOQA 5I4TG 2XXMA 3G0VA 1EIAA 3H47A 2M8LA
chains in the Genus database with same CATH superfamily
2M8NA 1RO0A 1YIJP 2LL8A 2N50A 3CCEP 2JU2A 1KC8Q 2KOQA 2MVUA 2QA4P 5F2KA 2AVAA 1M90Q 1FR2A 2GDWA 1L0IA 2VLPA 3MGEA 3DPHA 4XFYA 3CCUP 2XZ1C 2PEIA 1Q86Q 2P9XA 2PEJA 1QVFO 2L6EA 1VQPP 4PH0A 1VQ4P 4COCA 3WBHA 1VQ7P 2EIAA 5BS2A 4U0DA 2KGDA 3G6EP 2JBGA 2FVEA 3NY7B 2AF8A 4IZ6A 3CCLP 4XROA 2CG5B 1IMPA 2X2BA 3G21A 5KP7B 1VQ5P 1Z6MA 2ROQA 3RG2A 1QVGO 2KOSA 5I4TG 2M5RA 2FAEA 4BPFA 1UNKA 3EJBA 4CA3A 1D1DA 7CEIA 1IUQA 2XV6A 2K93A 2M8PA 4WYMA 2CQ8A 5EW5E 3CD6P 4HKGA 3E2DA 3G0VA 1OR5A 2OTJP 2KGCA 3G4SP 1M1KQ 1AYIA 3CC4P 2K5XA 3CC7P 4H2XC 3CXCO 3NTEA 4BPGA 2PEQA 2KG6A 2EHTA 2N5IA 4QKOA 4XRQA 2GZJA 2FADA 1CEIA 3G71P 2GZGA 3H47A 5EJDA 3P05A 1A8OA 1X3OA 3DS2A 3G29A 2N6ZA 4COPA 2AFDA 5BS1A 2JO0A 1ZMBA 1VKUA 5HVCA 4BPHA 2KORA 5HGLA 1ZNVA 1DV5A 2K0DX 3CCVP 1QRJA 5DCKA 2JB0A 1AF8A 2MVVA 2MD9A 3H0DA 5HGNA 4QNBA 1Q81Q 3DS5A 4MRTC 1W2BO 4R0MA 2VLOA 4PWVB 4U0AA 1MZ8A 2FQ1A 4U0CA 2XT1A 1N8RQ 3CPWO 2FACA 3RG6C 1IMQA 1M6EX 5HGOA 2KOOA 2K0XA 3HZQA 1ACPA 2VLNA 3GKLC 3EJEA 2CNRA 3DS4A 1RO2A 2GZEA 2PEMA 4XFZA 2FVAA 3GZMA 1L0HA 5HGMA 2PENA 5HV8A 1Q82Q 1K30A 2MF4A 4DG9A 2JU1A 1VQNP 1AUMA 2Z44A 2PY8A 2VSQA 3I56P 3G26A 3Q20A 3LMOA 4U0EA 2E1MA 2Z45A 1YHQP 2FHSC 2KR5A 3U43A 2JYLA 2LKIA 2QEXP 2Z46A 4H2WC 2GYKA 3DS0A 1JJ2O 4F37A 1S72P 1VQKP 2LMLA 3G1GA 5F2OA 2KW2A 2QNWA 2JAZA 2OARA 2JYGA 4U0BA 2KWLA 2MR7A 1GXGA 1EIAA 1BXIA 2GZFA 2MR8A 1VQOP 2EFJA 1E6JP 3B5IA 2EHSA 1NJIQ 2EG5A 2K94A 4PH1A 2KGEA 3CCQP 4GR2A 4IPYA 2BHVA 2KODA 1K73Q 1K9MQ 1VQLP 1NQ4A 3CE7A 2XXMA 4UHPB 2LOLA 1Q7YQ 3EJDA 3LRYA 3GZLA 2L4BA 2PNGA 3DS3A 4U0FA 3G1IA 2CWOA 2N98A 2GDXA 2K2QA 1DNYA 1HY8A 1M6NA 1YI2P 1RNIA 4M0IA 2OTLP 2JGPA 3G28A 1HQBA 2ONTA 1VQ6P 3H4EA 2AFEA 4NEOA 1BAJA 1YJ9P 4GR6A 2JQ4A 1VQ8P 3CCRP 3GJNA 2PEKA 2L22A 2N5HA 1GPJA 3CCJP 2PEOA 1KQSO 2XZ0D 3VRLC 3DS1A 3CC2P 2K92A 5JPAA 2BUOA 1T8KA 2LTEA 2NO8A 1F80D 2LF4A 1VHNA 5KP8B 1KD1Q 1EMVA 2FVFA 1YITP 2KG8A 2L0QA 5CZDB 5KP6B 1K8AQ 2K0YA 2CGQA 1M74A 2KGAA 4PXHB 1A43A 3CCSP 2WPTA 2KG9A 2KOPA 3CMEP 3B4QA 1E0HA 2MY5A 1EOQA 2LIUA 4H2YC 2DNWA 2LIWA 2M8LA 2GDYA 1UJZA 1GXHA 3CMAP 3HYBA 2GZIA 5F2NA 2ERHA 4XFXA 2L9FA 2DGYA 3DTJA 1YJNP 1KLPA 2LPKA 3M1MA 3CCMP 3I55P 1YJWP 1VQ9P 2N6YA 2FQ0A 3OW2O 2FQ2A 1VQMP 2VLQA
chains in the Genus database with same CATH topology
1RNIA 2OTJP 2M8NA 1VQNP 1AUMA 1RO0A 3G4SP 2Z44A 2PY8A 1YIJP 3I56P 1M1KQ 4M0IA 3G26A 3CCEP 3Q20A 2OTLP 1KC8Q 4U0EA 3CC4P 3G28A 2E1MA 3CC7P 2ONTA 2Z45A 2QA4P 5F2KA 3CXCO 3NTEA 1VQ6P 3H4EA 1YHQP 1M90Q 2PEQA 1BAJA 1YJ9P 3MGEA 3DPHA 4XRQA 4GR6A 4XFYA 2JYLA 1VQ8P 3CCRP 3CCUP 3G71P 2QEXP 3H47A 2PEIA 3P05A 2Z46A 2PEKA 1Q86Q 1A8OA 3DS2A 3DS0A 2P9XA 2PEJA 1QVFO 3CCJP 3G29A 2L6EA 1JJ2O 1VQPP 2PEOA 1KQSO 4COPA 5BS1A 2JO0A 4PH0A 1ZMBA 1S72P 1VQ4P 3VRLC 4COCA 3DS1A 3CC2P 5JPAA 2BUOA 3WBHA 1VQ7P 2EIAA 5BS2A 1VQKP 3G1GA 4U0DA 5HGLA 5F2OA 2OARA 2LF4A 3CCVP 1QRJA 2JYGA 4U0BA 5DCKA 1KD1Q 3G6EP 1YITP 1EIAA 1VQOP 2EFJA 3H0DA 1E6JP 3B5IA 5HGNA 1K8AQ 1M74A 3CCLP 1NJIQ 4QNBA 2EG5A 3DS5A 4XROA 1W2BO 1Q81Q 1A43A 4PH1A 3CCSP 3CCQP 4GR2A 4U0AA 4U0CA 3CMEP 2XT1A 3G21A 1N8RQ 1VQ5P 3CPWO 3RG6C 4IPYA 2BHVA 1QVGO 2KODA 1M6EX 5HGOA 1K73Q 1K9MQ 1EOQA 3HZQA 5I4TG 1VQLP 2XXMA 2M8LA 1Q7YQ 3CMAP 3HYBA 3LRYA 1D1DA 1IUQA 2XV6A 5F2NA 3DS4A 1RO2A 3DS3A 4XFXA 2DGYA 3DTJA 4U0FA 1YJNP 3G1IA 2M8PA 2CWOA 2PEMA 3M1MA 4WYMA 3CCMP 3I55P 1YJWP 1VQ9P 4XFZA 3CD6P 3OW2O 5HGMA 2PENA 1M6NA 1Q82Q 1YI2P 3E2DA 1K30A 3G0VA 1VQMP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P05 A;  2M8N A;  1AUM A;  3LRY A;  1E6J P;  1A8O A;  3DS2 A;  3DS0 A;  3G26 A;  4M0I A;  1D1D A;  5HGN A;  2XV6 A;  3DS4 A;  3G29 A;  2L6E A;  3DS3 A;  4U0E A;  4XFX A;  3G28 A;  4QNB A;  3DS5 A;  4XRO A;  4COP A;  1A43 A;  2ONT A;  3DTJ A;  2JO0 A;  4PH1 A;  4U0F A;  3NTE A;  4PH0 A;  3H4E A;  3G1I A;  2M8P A;  3VRL C;  3DS1 A;  4COC A;  4U0A A;  5JPA A;  4WYM A;  2BUO A;  4U0C A;  2XT1 A;  2EIA A;  3G21 A;  1BAJ A;  3G1G A;  4U0D A;  4XFZ A;  5HGL A;  3MGE A;  3DPH A;  4XRQ A;  4IPY A;  4XFY A;  2LF4 A;  2JYL A;  1QRJ A;  2JYG A;  2KOD A;  4U0B A;  5DCK A;  5HGM A;  5HGO A;  1EOQ A;  5I4T G;  2XXM A;  3G0V A;  1EIA A;  3H47 A;  2M8L A; 
#chains in the Genus database with same CATH topology
 2M8N A;  1RO0 A;  1YIJ P;  2LL8 A;  2N50 A;  3CCE P;  2JU2 A;  1KC8 Q;  2KOQ A;  2MVU A;  2QA4 P;  5F2K A;  2AVA A;  1M90 Q;  1FR2 A;  2GDW A;  1L0I A;  2VLP A;  3MGE A;  3DPH A;  4XFY A;  3CCU P;  2XZ1 C;  2PEI A;  1Q86 Q;  2P9X A;  2PEJ A;  1QVF O;  2L6E A;  1VQP P;  4PH0 A;  1VQ4 P;  4COC A;  3WBH A;  1VQ7 P;  2EIA A;  5BS2 A;  4U0D A;  2KGD A;  3G6E P;  2JBG A;  2FVE A;  3NY7 B;  2AF8 A;  4IZ6 A;  3CCL P;  4XRO A;  2CG5 B;  1IMP A;  2X2B A;  3G21 A;  5KP7 B;  1VQ5 P;  1Z6M A;  2ROQ A;  3RG2 A;  1QVG O;  2KOS A;  5I4T G;  2M5R A;  2FAE A;  4BPF A;  1UNK A;  3EJB A;  4CA3 A;  1D1D A;  7CEI A;  1IUQ A;  2XV6 A;  2K93 A;  2M8P A;  4WYM A;  2CQ8 A;  5EW5 E;  3CD6 P;  4HKG A;  3E2D A;  3G0V A;  1OR5 A;  2OTJ P;  2KGC A;  3G4S P;  1M1K Q;  1AYI A;  3CC4 P;  2K5X A;  3CC7 P;  4H2X C;  3CXC O;  3NTE A;  4BPG A;  2PEQ A;  2KG6 A;  2EHT A;  2N5I A;  4QKO A;  4XRQ A;  2GZJ A;  2FAD A;  1CEI A;  3G71 P;  2GZG A;  3H47 A;  5EJD A;  3P05 A;  1A8O A;  1X3O A;  3DS2 A;  3G29 A;  2N6Z A;  4COP A;  2AFD A;  5BS1 A;  2JO0 A;  1ZMB A;  1VKU A;  5HVC A;  4BPH A;  2KOR A;  5HGL A;  1ZNV A;  1DV5 A;  2K0D X;  3CCV P;  1QRJ A;  5DCK A;  2JB0 A;  1AF8 A;  2MVV A;  2MD9 A;  3H0D A;  5HGN A;  4QNB A;  1Q81 Q;  3DS5 A;  4MRT C;  1W2B O;  4R0M A;  2VLO A;  4PWV B;  4U0A A;  1MZ8 A;  2FQ1 A;  4U0C A;  2XT1 A;  1N8R Q;  3CPW O;  2FAC A;  3RG6 C;  1IMQ A;  1M6E X;  5HGO A;  2KOO A;  2K0X A;  3HZQ A;  1ACP A;  2VLN A;  3GKL C;  3EJE A;  2CNR A;  3DS4 A;  1RO2 A;  2GZE A;  2PEM A;  4XFZ A;  2FVA A;  3GZM A;  1L0H A;  5HGM A;  2PEN A;  5HV8 A;  1Q82 Q;  1K30 A;  2MF4 A;  4DG9 A;  2JU1 A;  1VQN P;  1AUM A;  2Z44 A;  2PY8 A;  2VSQ A;  3I56 P;  3G26 A;  3Q20 A;  3LMO A;  4U0E A;  2E1M A;  2Z45 A;  1YHQ P;  2FHS C;  2KR5 A;  3U43 A;  2JYL A;  2LKI A;  2QEX P;  2Z46 A;  4H2W C;  2GYK A;  3DS0 A;  1JJ2 O;  4F37 A;  1S72 P;  1VQK P;  2LML A;  3G1G A;  5F2O A;  2KW2 A;  2QNW A;  2JAZ A;  2OAR A;  2JYG A;  4U0B A;  2KWL A;  2MR7 A;  1GXG A;  1EIA A;  1BXI A;  2GZF A;  2MR8 A;  1VQO P;  2EFJ A;  1E6J P;  3B5I A;  2EHS A;  1NJI Q;  2EG5 A;  2K94 A;  4PH1 A;  2KGE A;  3CCQ P;  4GR2 A;  4IPY A;  2BHV A;  2KOD A;  1K73 Q;  1K9M Q;  1VQL P;  1NQ4 A;  3CE7 A;  2XXM A;  4UHP B;  2LOL A;  1Q7Y Q;  3EJD A;  3LRY A;  3GZL A;  2L4B A;  2PNG A;  3DS3 A;  4U0F A;  3G1I A;  2CWO A;  2N98 A;  2GDX A;  2K2Q A;  1DNY A;  1HY8 A;  1M6N A;  1YI2 P;  1RNI A;  4M0I A;  2OTL P;  2JGP A;  3G28 A;  1HQB A;  2ONT A;  1VQ6 P;  3H4E A;  2AFE A;  4NEO A;  1BAJ A;  1YJ9 P;  4GR6 A;  2JQ4 A;  1VQ8 P;  3CCR P;  3GJN A;  2PEK A;  2L22 A;  2N5H A;  1GPJ A;  3CCJ P;  2PEO A;  1KQS O;  2XZ0 D;  3VRL C;  3DS1 A;  3CC2 P;  2K92 A;  5JPA A;  2BUO A;  1T8K A;  2LTE A;  2NO8 A;  1F80 D;  2LF4 A;  1VHN A;  5KP8 B;  1KD1 Q;  1EMV A;  2FVF A;  1YIT P;  2KG8 A;  2L0Q A;  5CZD B;  5KP6 B;  1K8A Q;  2K0Y A;  2CGQ A;  1M74 A;  2KGA A;  4PXH B;  1A43 A;  3CCS P;  2WPT A;  2KG9 A;  2KOP A;  3CME P;  3B4Q A;  1E0H A;  2MY5 A;  1EOQ A;  2LIU A;  4H2Y C;  2DNW A;  2LIW A;  2M8L A;  2GDY A;  1UJZ A;  1GXH A;  3CMA P;  3HYB A;  2GZI A;  5F2N A;  2ERH A;  4XFX A;  2L9F A;  2DGY A;  3DTJ A;  1YJN P;  1KLP A;  2LPK A;  3M1M A;  3CCM P;  3I55 P;  1YJW P;  1VQ9 P;  2N6Y A;  2FQ0 A;  3OW2 O;  2FQ2 A;  1VQM P;  2VLQ A; 
#chains in the Genus database with same CATH homology
 1RNI A;  2OTJ P;  2M8N A;  1VQN P;  1AUM A;  1RO0 A;  3G4S P;  2Z44 A;  2PY8 A;  1YIJ P;  3I56 P;  1M1K Q;  4M0I A;  3G26 A;  3CCE P;  3Q20 A;  2OTL P;  1KC8 Q;  4U0E A;  3CC4 P;  3G28 A;  2E1M A;  3CC7 P;  2ONT A;  2Z45 A;  2QA4 P;  5F2K A;  3CXC O;  3NTE A;  1VQ6 P;  3H4E A;  1YHQ P;  1M90 Q;  2PEQ A;  1BAJ A;  1YJ9 P;  3MGE A;  3DPH A;  4XRQ A;  4GR6 A;  4XFY A;  2JYL A;  1VQ8 P;  3CCR P;  3CCU P;  3G71 P;  2QEX P;  3H47 A;  2PEI A;  3P05 A;  2Z46 A;  2PEK A;  1Q86 Q;  1A8O A;  3DS2 A;  3DS0 A;  2P9X A;  2PEJ A;  1QVF O;  3CCJ P;  3G29 A;  2L6E A;  1JJ2 O;  1VQP P;  2PEO A;  1KQS O;  4COP A;  5BS1 A;  2JO0 A;  4PH0 A;  1ZMB A;  1S72 P;  1VQ4 P;  3VRL C;  4COC A;  3DS1 A;  3CC2 P;  5JPA A;  2BUO A;  3WBH A;  1VQ7 P;  2EIA A;  5BS2 A;  1VQK P;  3G1G A;  4U0D A;  5HGL A;  5F2O A;  2OAR A;  2LF4 A;  3CCV P;  1QRJ A;  2JYG A;  4U0B A;  5DCK A;  1KD1 Q;  3G6E P;  1YIT P;  1EIA A;  1VQO P;  2EFJ A;  3H0D A;  1E6J P;  3B5I A;  5HGN A;  1K8A Q;  1M74 A;  3CCL P;  1NJI Q;  4QNB A;  2EG5 A;  3DS5 A;  4XRO A;  1W2B O;  1Q81 Q;  1A43 A;  4PH1 A;  3CCS P;  3CCQ P;  4GR2 A;  4U0A A;  4U0C A;  3CME P;  2XT1 A;  3G21 A;  1N8R Q;  1VQ5 P;  3CPW O;  3RG6 C;  4IPY A;  2BHV A;  1QVG O;  2KOD A;  1M6E X;  5HGO A;  1K73 Q;  1K9M Q;  1EOQ A;  3HZQ A;  5I4T G;  1VQL P;  2XXM A;  2M8L A;  1Q7Y Q;  3CMA P;  3HYB A;  3LRY A;  1D1D A;  1IUQ A;  2XV6 A;  5F2N A;  3DS4 A;  1RO2 A;  3DS3 A;  4XFX A;  2DGY A;  3DTJ A;  4U0F A;  1YJN P;  3G1I A;  2M8P A;  2CWO A;  2PEM A;  3M1M A;  4WYM A;  3CCM P;  3I55 P;  1YJW P;  1VQ9 P;  4XFZ A;  3CD6 P;  3OW2 O;  5HGM A;  2PEN A;  1M6N A;  1Q82 Q;  1YI2 P;  3E2D A;  1K30 A;  3G0V A;  1VQM P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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