3G0VA

Crystal structure of the c-terminal domain from the rous sarcoma virus capsid protein: mutant d179a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
76
structure length
76
Chain Sequence
b'GPWADIMQGPSESFVDFANRLIKAVEGSALPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
molecule keywords Gag polyprotein
source organism Rous sarcoma virus
molecule tags Viral protein
total genus 25
structure length 76
sequence length 76
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g0vA00
3G1GA 3DS5A 3DPHA 1A8OA 2M8NA 3G26A 3G21A 1EIAA 3DS0A 3G28A 3G29A 3DTJA 3DS2A 4XFXA 2JYGA 3DS3A 3G1IA 4XFZA 1E6JP 3MGEA 3VRLC 5HGOA 2XT1A 4COCA 2M8LA 4U0BA 4U0EA 2BUOA 1QRJA 3H4EA 2L6EA 4U0CA 5HGLA 2LF4A 3LRYA 4U0AA 4COPA 4U0FA 1D1DA 5DCKA 3G0VA 5JPAA 1A43A 2M8PA 1AUMA 4XROA 5I4TG 3NTEA 3DS1A 4M0IA 4XRQA 2ONTA 3H47A 5HGMA 2EIAA 2XV6A 5HGNA 4WYMA 2KODA 4IPYA 2XXMA 1BAJA 3DS4A 1EOQA 3P05A 4PH1A 4QNBA 4U0DA 2JO0A 4PH0A 2JYLA 4XFYA
chains in the Genus database with same CATH superfamily
4HKGA 3G71P 3CCUP 1L0HA 4GR6A 1X3OA 2L6EA 4COPA 1QVFO 2BHVA 1Z6MA 2VLOA 2KG6A 1QVGO 2EIAA 2JO0A 1VQ8P 3G26A 3DS2A 2XT1A 3CCMP 1QRJA 2FQ0A 3I55P 1JJ2O 5I4TG 3CC2P 4BPGA 2ONTA 3CCRP 4NEOA 1VQ6P 1IMQA 4R0MA 1BAJA 4QNBA 4H2XC 3DPHA 2FVEA 1A8OA 2M8NA 2KOSA 2PNGA 4CA3A 3G1IA 4XFZA 3MGEA 1UJZA 3GZMA 3G0VA 1AF8A 3GJNA 1GXHA 3CCVP 2KODA 4QKOA 1M1KQ 3DS3A 2PEMA 3RG2A 2LKIA 2FADA 4GR2A 1L0IA 1KQSO 2M8PA 1IMPA 3WBHA 1M6NA 1UNKA 1K30A 2GZJA 1EIAA 2KG9A 2JGPA 2QA4P 2XZ0D 2PENA 3RG6C 2L9FA 1IUQA 2QNWA 4IZ6A 5F2KA 1YJ9P 2GZGA 1Q81Q 1DNYA 2K93A 2KGEA 3CXCO 4H2YC 1HY8A 1F80D 2EHTA 1RNIA 2VSQA 1S72P 3B5IA 4UHPB 2XZ1C 2K94A 2MR7A 4MRTC 4F37A 4U0EA 2MR8A 4U0CA 2LF4A 1GXGA 2KOOA 4U0FA 5F2OA 2VLNA 2Z45A 2N6YA 2Z46A 2L22A 1YIJP 5HGNA 4IPYA 1YHQP 1Q82Q 2L0QA 1ACPA 2N5HA 2PEOA 2MF4A 3H4EA 4PXHB 1K9MQ 3I56P 2FAEA 1NQ4A 1M74A 1N8RQ 3H47A 2K2QA 2K0XA 2VLQA 2KGCA 2LIWA 4PH0A 1FR2A 4PWVB 1Q86Q 2FQ1A 2VLPA 2CGQA 3EJBA 4COCA 1HQBA 2BUOA 2WPTA 5F2NA 1YJWP 1VQ9P 4U0AA 1AYIA 5DCKA 2OARA 2CG5B 5EW5E 2Z44A 1DV5A 3CCJP 2GYKA 3EJEA 4BPFA 3CE7A 1M6EX 2AFEA 2KOPA 2MD9A 2JYGA 5KP8B 5HGOA 3CCQP 1Q7YQ 1EMVA 5BS2A 3M1MA 5JPAA 2MVVA 1AUMA 2KORA 1VQNP 7CEIA 3NTEA 3G4SP 2PY8A 2AVAA 1KLPA 5HGMA 1RO0A 2XV6A 4WYMA 2N50A 2XXMA 2PEQA 2QEXP 4XFYA 2JU1A 1VQOP 2CNRA 2DGYA 2PEKA 1RO2A 3Q20A 3CCEP 1KD1Q 1W2BO 4M0IA 3E2DA 3EJDA 3LMOA 2FHSC 5HVCA 2JB0A 2FVFA 4PH1A 2E1MA 2AFDA 2K0DX 2K5XA 2KG8A 4U0BA 1VKUA 3LRYA 5BS1A 2CWOA 2KOQA 1GPJA 1YITP 2GZIA 2PEJA 2OTLP 2KR5A 2PEIA 3CD6P 2JYLA 3G1GA 3DS5A 3H0DA 3G29A 5CZDB 1VHNA 2KW2A 1K8AQ 5KP7B 1T8KA 2K0YA 1VQMP 2JAZA 3GZLA 1VQPP 3G6EP 3CMAP 2JU2A 1YI2P 3DS4A 3NY7B 1YJNP 5HGLA 3DS0A 3G28A 1MZ8A 2FQ2A 4XFXA 3CC4P 2OTJP 2ERHA 2GZEA 2DNWA 1KC8Q 1VQLP 2FACA 1D1DA 1A43A 3B4QA 2CQ8A 2KWLA 3OW2O 2L4BA 3DS1A 4XRQA 4H2WC 3CC7P 2LOLA 1E0HA 2JBGA 1CEIA 2JQ4A 1NJIQ 2AF8A 2EG5A 1ZNVA 2ROQA 3G21A 4DG9A 3HZQA 2EHSA 3CCSP 2LTEA 3CCLP 2KGDA 1VQ7P 4XROA 3CPWO 4BPHA 2N6ZA 1M90Q 2GDWA 1VQ5P 3P05A 1BXIA 2MVUA 1VQ4P 1OR5A 3DTJA 2LL8A 2NO8A 3U43A 2P9XA 3CMEP 2K92A 3GKLC 2M5RA 2M8LA 2GDXA 1ZMBA 2X2BA 5KP6B 2EFJA 2N5IA 2GZFA 2KGAA 5HV8A 2LMLA 1E6JP 2LIUA 3VRLC 2N98A 2LPKA 5EJDA 2MY5A 2GDYA 1K73Q 1VQKP 1EOQA 2FVAA 4U0DA 3HYBA
chains in the Genus database with same CATH topology
1K30A 1M6EX 3G71P 3CCUP 1YJNP 1EIAA 3DS0A 3G28A 5HGLA 4XFXA 2JYGA 3CC4P 2QA4P 2OTJP 5HGOA 3CCQP 1Q7YQ 2PENA 4GR6A 3RG6C 1IUQA 2L6EA 1KC8Q 4COPA 5BS2A 1VQLP 1QVFO 1D1DA 3M1MA 5JPAA 1A43A 5F2KA 1AUMA 1YJ9P 2BHVA 1Q81Q 1VQNP 3OW2O 3NTEA 3DS1A 4XRQA 2PY8A 3G4SP 3CXCO 3CC7P 5HGMA 1QVGO 1RO0A 2EIAA 2XV6A 4WYMA 2XXMA 2PEQA 2QEXP 2JO0A 4XFYA 1RNIA 1NJIQ 1VQ8P 1VQOP 1S72P 2EG5A 3G26A 2DGYA 3B5IA 3G21A 3DS2A 2PEKA 1RO2A 3HZQA 2XT1A 3Q20A 3CCMP 4U0EA 3CCEP 1QRJA 4U0CA 2LF4A 3CCSP 1KD1Q 3I55P 4U0FA 5F2OA 3CCLP 1JJ2O 1W2BO 1VQ7P 4XROA 5I4TG 3CPWO 3CC2P 4M0IA 2ONTA 2Z45A 3E2DA 3CCRP 2Z46A 1VQ6P 1M90Q 1YIJP 5HGNA 4IPYA 1YHQP 1VQ5P 1BAJA 1Q82Q 4PH1A 4QNBA 3P05A 2E1MA 3DPHA 2PEOA 1A8OA 2M8NA 1VQ4P 3DTJA 3G1IA 4XFZA 3MGEA 4U0BA 3H4EA 1K9MQ 3I56P 2P9XA 3LRYA 5BS1A 2CWOA 3G0VA 3CMEP 1YITP 1M74A 1N8RQ 2PEJA 3H47A 2OTLP 3CCVP 2KODA 2PEIA 3CD6P 4PH0A 2JYLA 2M8LA 1Q86Q 1ZMBA 3G1GA 3DS5A 3H0DA 2EFJA 3G29A 1M1KQ 3DS3A 2PEMA 1E6JP 3VRLC 4COCA 5F2NA 2BUOA 1YJWP 1K8AQ 1VQ9P 1VQMP 4U0AA 5DCKA 4GR2A 2OARA 1KQSO 2M8PA 2Z44A 1K73Q 1VQPP 1VQKP 3G6EP 3CMAP 3WBHA 3CCJP 1YI2P 3DS4A 1EOQA 1M6NA 4U0DA 3HYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G1G A;  3DS5 A;  3DPH A;  1A8O A;  2M8N A;  3G26 A;  3G21 A;  1EIA A;  3DS0 A;  3G28 A;  3G29 A;  3DTJ A;  3DS2 A;  4XFX A;  2JYG A;  3DS3 A;  3G1I A;  4XFZ A;  1E6J P;  3MGE A;  3VRL C;  5HGO A;  2XT1 A;  4COC A;  2M8L A;  4U0B A;  4U0E A;  2BUO A;  1QRJ A;  3H4E A;  2L6E A;  4U0C A;  5HGL A;  2LF4 A;  3LRY A;  4U0A A;  4COP A;  4U0F A;  1D1D A;  5DCK A;  3G0V A;  5JPA A;  1A43 A;  2M8P A;  1AUM A;  4XRO A;  5I4T G;  3NTE A;  3DS1 A;  4M0I A;  4XRQ A;  2ONT A;  3H47 A;  5HGM A;  2EIA A;  2XV6 A;  5HGN A;  4WYM A;  2KOD A;  4IPY A;  2XXM A;  1BAJ A;  3DS4 A;  1EOQ A;  3P05 A;  4PH1 A;  4QNB A;  4U0D A;  2JO0 A;  4PH0 A;  2JYL A;  4XFY A; 
#chains in the Genus database with same CATH topology
 4HKG A;  3G71 P;  3CCU P;  1L0H A;  4GR6 A;  1X3O A;  2L6E A;  4COP A;  1QVF O;  2BHV A;  1Z6M A;  2VLO A;  2KG6 A;  1QVG O;  2EIA A;  2JO0 A;  1VQ8 P;  3G26 A;  3DS2 A;  2XT1 A;  3CCM P;  1QRJ A;  2FQ0 A;  3I55 P;  1JJ2 O;  5I4T G;  3CC2 P;  4BPG A;  2ONT A;  3CCR P;  4NEO A;  1VQ6 P;  1IMQ A;  4R0M A;  1BAJ A;  4QNB A;  4H2X C;  3DPH A;  2FVE A;  1A8O A;  2M8N A;  2KOS A;  2PNG A;  4CA3 A;  3G1I A;  4XFZ A;  3MGE A;  1UJZ A;  3GZM A;  3G0V A;  1AF8 A;  3GJN A;  1GXH A;  3CCV P;  2KOD A;  4QKO A;  1M1K Q;  3DS3 A;  2PEM A;  3RG2 A;  2LKI A;  2FAD A;  4GR2 A;  1L0I A;  1KQS O;  2M8P A;  1IMP A;  3WBH A;  1M6N A;  1UNK A;  1K30 A;  2GZJ A;  1EIA A;  2KG9 A;  2JGP A;  2QA4 P;  2XZ0 D;  2PEN A;  3RG6 C;  2L9F A;  1IUQ A;  2QNW A;  4IZ6 A;  5F2K A;  1YJ9 P;  2GZG A;  1Q81 Q;  1DNY A;  2K93 A;  2KGE A;  3CXC O;  4H2Y C;  1HY8 A;  1F80 D;  2EHT A;  1RNI A;  2VSQ A;  1S72 P;  3B5I A;  4UHP B;  2XZ1 C;  2K94 A;  2MR7 A;  4MRT C;  4F37 A;  4U0E A;  2MR8 A;  4U0C A;  2LF4 A;  1GXG A;  2KOO A;  4U0F A;  5F2O A;  2VLN A;  2Z45 A;  2N6Y A;  2Z46 A;  2L22 A;  1YIJ P;  5HGN A;  4IPY A;  1YHQ P;  1Q82 Q;  2L0Q A;  1ACP A;  2N5H A;  2PEO A;  2MF4 A;  3H4E A;  4PXH B;  1K9M Q;  3I56 P;  2FAE A;  1NQ4 A;  1M74 A;  1N8R Q;  3H47 A;  2K2Q A;  2K0X A;  2VLQ A;  2KGC A;  2LIW A;  4PH0 A;  1FR2 A;  4PWV B;  1Q86 Q;  2FQ1 A;  2VLP A;  2CGQ A;  3EJB A;  4COC A;  1HQB A;  2BUO A;  2WPT A;  5F2N A;  1YJW P;  1VQ9 P;  4U0A A;  1AYI A;  5DCK A;  2OAR A;  2CG5 B;  5EW5 E;  2Z44 A;  1DV5 A;  3CCJ P;  2GYK A;  3EJE A;  4BPF A;  3CE7 A;  1M6E X;  2AFE A;  2KOP A;  2MD9 A;  2JYG A;  5KP8 B;  5HGO A;  3CCQ P;  1Q7Y Q;  1EMV A;  5BS2 A;  3M1M A;  5JPA A;  2MVV A;  1AUM A;  2KOR A;  1VQN P;  7CEI A;  3NTE A;  3G4S P;  2PY8 A;  2AVA A;  1KLP A;  5HGM A;  1RO0 A;  2XV6 A;  4WYM A;  2N50 A;  2XXM A;  2PEQ A;  2QEX P;  4XFY A;  2JU1 A;  1VQO P;  2CNR A;  2DGY A;  2PEK A;  1RO2 A;  3Q20 A;  3CCE P;  1KD1 Q;  1W2B O;  4M0I A;  3E2D A;  3EJD A;  3LMO A;  2FHS C;  5HVC A;  2JB0 A;  2FVF A;  4PH1 A;  2E1M A;  2AFD A;  2K0D X;  2K5X A;  2KG8 A;  4U0B A;  1VKU A;  3LRY A;  5BS1 A;  2CWO A;  2KOQ A;  1GPJ A;  1YIT P;  2GZI A;  2PEJ A;  2OTL P;  2KR5 A;  2PEI A;  3CD6 P;  2JYL A;  3G1G A;  3DS5 A;  3H0D A;  3G29 A;  5CZD B;  1VHN A;  2KW2 A;  1K8A Q;  5KP7 B;  1T8K A;  2K0Y A;  1VQM P;  2JAZ A;  3GZL A;  1VQP P;  3G6E P;  3CMA P;  2JU2 A;  1YI2 P;  3DS4 A;  3NY7 B;  1YJN P;  5HGL A;  3DS0 A;  3G28 A;  1MZ8 A;  2FQ2 A;  4XFX A;  3CC4 P;  2OTJ P;  2ERH A;  2GZE A;  2DNW A;  1KC8 Q;  1VQL P;  2FAC A;  1D1D A;  1A43 A;  3B4Q A;  2CQ8 A;  2KWL A;  3OW2 O;  2L4B A;  3DS1 A;  4XRQ A;  4H2W C;  3CC7 P;  2LOL A;  1E0H A;  2JBG A;  1CEI A;  2JQ4 A;  1NJI Q;  2AF8 A;  2EG5 A;  1ZNV A;  2ROQ A;  3G21 A;  4DG9 A;  3HZQ A;  2EHS A;  3CCS P;  2LTE A;  3CCL P;  2KGD A;  1VQ7 P;  4XRO A;  3CPW O;  4BPH A;  2N6Z A;  1M90 Q;  2GDW A;  1VQ5 P;  3P05 A;  1BXI A;  2MVU A;  1VQ4 P;  1OR5 A;  3DTJ A;  2LL8 A;  2NO8 A;  3U43 A;  2P9X A;  3CME P;  2K92 A;  3GKL C;  2M5R A;  2M8L A;  2GDX A;  1ZMB A;  2X2B A;  5KP6 B;  2EFJ A;  2N5I A;  2GZF A;  2KGA A;  5HV8 A;  2LML A;  1E6J P;  2LIU A;  3VRL C;  2N98 A;  2LPK A;  5EJD A;  2MY5 A;  2GDY A;  1K73 Q;  1VQK P;  1EOQ A;  2FVA A;  4U0D A;  3HYB A; 
#chains in the Genus database with same CATH homology
 1K30 A;  1M6E X;  3G71 P;  3CCU P;  1YJN P;  1EIA A;  3DS0 A;  3G28 A;  5HGL A;  4XFX A;  2JYG A;  3CC4 P;  2QA4 P;  2OTJ P;  5HGO A;  3CCQ P;  1Q7Y Q;  2PEN A;  4GR6 A;  3RG6 C;  1IUQ A;  2L6E A;  1KC8 Q;  4COP A;  5BS2 A;  1VQL P;  1QVF O;  1D1D A;  3M1M A;  5JPA A;  1A43 A;  5F2K A;  1AUM A;  1YJ9 P;  2BHV A;  1Q81 Q;  1VQN P;  3OW2 O;  3NTE A;  3DS1 A;  4XRQ A;  2PY8 A;  3G4S P;  3CXC O;  3CC7 P;  5HGM A;  1QVG O;  1RO0 A;  2EIA A;  2XV6 A;  4WYM A;  2XXM A;  2PEQ A;  2QEX P;  2JO0 A;  4XFY A;  1RNI A;  1NJI Q;  1VQ8 P;  1VQO P;  1S72 P;  2EG5 A;  3G26 A;  2DGY A;  3B5I A;  3G21 A;  3DS2 A;  2PEK A;  1RO2 A;  3HZQ A;  2XT1 A;  3Q20 A;  3CCM P;  4U0E A;  3CCE P;  1QRJ A;  4U0C A;  2LF4 A;  3CCS P;  1KD1 Q;  3I55 P;  4U0F A;  5F2O A;  3CCL P;  1JJ2 O;  1W2B O;  1VQ7 P;  4XRO A;  5I4T G;  3CPW O;  3CC2 P;  4M0I A;  2ONT A;  2Z45 A;  3E2D A;  3CCR P;  2Z46 A;  1VQ6 P;  1M90 Q;  1YIJ P;  5HGN A;  4IPY A;  1YHQ P;  1VQ5 P;  1BAJ A;  1Q82 Q;  4PH1 A;  4QNB A;  3P05 A;  2E1M A;  3DPH A;  2PEO A;  1A8O A;  2M8N A;  1VQ4 P;  3DTJ A;  3G1I A;  4XFZ A;  3MGE A;  4U0B A;  3H4E A;  1K9M Q;  3I56 P;  2P9X A;  3LRY A;  5BS1 A;  2CWO A;  3G0V A;  3CME P;  1YIT P;  1M74 A;  1N8R Q;  2PEJ A;  3H47 A;  2OTL P;  3CCV P;  2KOD A;  2PEI A;  3CD6 P;  4PH0 A;  2JYL A;  2M8L A;  1Q86 Q;  1ZMB A;  3G1G A;  3DS5 A;  3H0D A;  2EFJ A;  3G29 A;  1M1K Q;  3DS3 A;  2PEM A;  1E6J P;  3VRL C;  4COC A;  5F2N A;  2BUO A;  1YJW P;  1K8A Q;  1VQ9 P;  1VQM P;  4U0A A;  5DCK A;  4GR2 A;  2OAR A;  1KQS O;  2M8P A;  2Z44 A;  1K73 Q;  1VQP P;  1VQK P;  3G6E P;  3CMA P;  3WBH A;  3CCJ P;  1YI2 P;  3DS4 A;  1EOQ A;  1M6N A;  4U0D A;  3HYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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