3G19A

The structure of the caulobacter crescentus clps protease adaptor protein in complex with lll tripeptide
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
84
structure length
84
Chain Sequence
QKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 25
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2009-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g19A00
3DNJA 4YJMA 1MBVB 1CTFA 1DD4A 3O2HA 3O2BA 3G1BA 1MG9A 4YJXA 3GW1A 1R6QC 1RQVA 1R6OC 3G3PA 1LZWA 1DD3A 3GQ0A 1MBXC 1RQUA 2WA9A 2W9RA 3O1FB 3GQ1A 1MBUC 3G19A 4YKAA 3O1FA 2WA8A 1RQSA 3O2OA
chains in the Genus database with same CATH superfamily
3G6EW 1Q86X 1NJIX 3CMEW 1DD4A 1W2BV 1VQ7W 5JVHW 3GW1A 4WFBW 1R6QC 1RQVA 1R6OC 1DD3A 3ZG5A 5JVGW 1M90X 2WA9A 3O1FB 3CCEW 4U67W 3G71W 1VQPW 4CJNA 5GAGa 4BL2A 3CPWV 2OTLW 4UY8Z 4WFAW 1KQSV 1MWUA 3G4SW 1K8AX 1VQ8W 3O1FA 3CCMW 2WA8A 1RQSA 1Q82X 2ZJQW 1YJNW 3CCQW 4WF9W 3OW2V 3J7ZZ 5GADa 4IOCW 3G1BA 1Q7YX 1KC8X 2QA4W 3DLLW 1M1KX 1YHQW 1KD1X 2OTJW 3CC4W 3CC7W 1LZWA 1YJ9W 3CCVW 3GQ0A 3I56W 3PIOW 3GQ1A 1K73X 5M18A 1YITW 3CF5W 1VQ4W 1N8RX 4YJMA 5M19A 3ZFZA 3DNJA 3CXCV 3CMAW 1Q81X 1YIJW 1VQKW 3O2HA 3O2BA 3CCRW 4YJXA 1K9MX 1VQQA 1MWRA 4BL3A 3PIPW 1VQMW 1VQNW 5CA3A 1MBXC 1JJ2V 5DM6W 3ZG0A 2W9RA 1VQ5W 3CC2W 5M1AA 4DKIA 1MWSA 2QEXW 3W7UA 1S72W 5GAHa 4CPKA 2ZJPW 4YKAA 3CCLW 1VQ9W 5DM7W 1VQOW 3W7TA 5GW7A 1QVGV 4IOAW 3W7SA 4IO9W 1YJWW 4WFNW 2ZJRW 1MWTA 1MBVB 1CTFA 4WCEW 3CD6W 1MG9A 3CCSW 5HL7W 1BXYA 3CCJW 1VQ6W 3G3PA 3I55W 1QVFV 1RQUA 1YI2W 1MBUC 3W7XA 1VQLW 3G19A 3D3IA 3W7WA 3CCUW 5GAEa 3O2OA
chains in the Genus database with same CATH topology
3DNJA 4YJMA 1MBVB 1CTFA 1DD4A 3O2HA 3O2BA 3G1BA 1MG9A 4YJXA 3GW1A 1R6QC 1RQVA 1R6OC 3G3PA 1LZWA 1DD3A 3GQ0A 1MBXC 1RQUA 2WA9A 2W9RA 3O1FB 3GQ1A 1MBUC 3G19A 4YKAA 3O1FA 2WA8A 1RQSA 3O2OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DNJ A;  4YJM A;  1MBV B;  1CTF A;  1DD4 A;  3O2H A;  3O2B A;  3G1B A;  1MG9 A;  4YJX A;  3GW1 A;  1R6Q C;  1RQV A;  1R6O C;  3G3P A;  1LZW A;  1DD3 A;  3GQ0 A;  1MBX C;  1RQU A;  2WA9 A;  2W9R A;  3O1F B;  3GQ1 A;  1MBU C;  3G19 A;  4YKA A;  3O1F A;  2WA8 A;  1RQS A;  3O2O A; 
#chains in the Genus database with same CATH topology
 3G6E W;  1Q86 X;  1NJI X;  3CME W;  1DD4 A;  1W2B V;  1VQ7 W;  5JVH W;  3GW1 A;  4WFB W;  1R6Q C;  1RQV A;  1R6O C;  1DD3 A;  3ZG5 A;  5JVG W;  1M90 X;  2WA9 A;  3O1F B;  3CCE W;  4U67 W;  3G71 W;  1VQP W;  4CJN A;  5GAG a;  4BL2 A;  3CPW V;  2OTL W;  4UY8 Z;  4WFA W;  1KQS V;  1MWU A;  3G4S W;  1K8A X;  1VQ8 W;  3O1F A;  3CCM W;  2WA8 A;  1RQS A;  1Q82 X;  2ZJQ W;  1YJN W;  3CCQ W;  4WF9 W;  3OW2 V;  3J7Z Z;  5GAD a;  4IOC W;  3G1B A;  1Q7Y X;  1KC8 X;  2QA4 W;  3DLL W;  1M1K X;  1YHQ W;  1KD1 X;  2OTJ W;  3CC4 W;  3CC7 W;  1LZW A;  1YJ9 W;  3CCV W;  3GQ0 A;  3I56 W;  3PIO W;  3GQ1 A;  1K73 X;  5M18 A;  1YIT W;  3CF5 W;  1VQ4 W;  1N8R X;  4YJM A;  5M19 A;  3ZFZ A;  3DNJ A;  3CXC V;  3CMA W;  1Q81 X;  1YIJ W;  1VQK W;  3O2H A;  3O2B A;  3CCR W;  4YJX A;  1K9M X;  1VQQ A;  1MWR A;  4BL3 A;  3PIP W;  1VQM W;  1VQN W;  5CA3 A;  1MBX C;  1JJ2 V;  5DM6 W;  3ZG0 A;  2W9R A;  1VQ5 W;  3CC2 W;  5M1A A;  4DKI A;  1MWS A;  2QEX W;  3W7U A;  1S72 W;  5GAH a;  4CPK A;  2ZJP W;  4YKA A;  3CCL W;  1VQ9 W;  5DM7 W;  1VQO W;  3W7T A;  5GW7 A;  1QVG V;  4IOA W;  3W7S A;  4IO9 W;  1YJW W;  4WFN W;  2ZJR W;  1MWT A;  1MBV B;  1CTF A;  4WCE W;  3CD6 W;  1MG9 A;  3CCS W;  5HL7 W;  1BXY A;  3CCJ W;  1VQ6 W;  3G3P A;  3I55 W;  1QVF V;  1RQU A;  1YI2 W;  1MBU C;  3W7X A;  1VQL W;  3G19 A;  3D3I A;  3W7W A;  3CCU W;  5GAE a;  3O2O A; 
#chains in the Genus database with same CATH homology
 3DNJ A;  4YJM A;  1MBV B;  1CTF A;  1DD4 A;  3O2H A;  3O2B A;  3G1B A;  1MG9 A;  4YJX A;  3GW1 A;  1R6Q C;  1RQV A;  1R6O C;  3G3P A;  1LZW A;  1DD3 A;  3GQ0 A;  1MBX C;  1RQU A;  2WA9 A;  2W9R A;  3O1F B;  3GQ1 A;  1MBU C;  3G19 A;  4YKA A;  3O1F A;  2WA8 A;  1RQS A;  3O2O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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