3G1BA

The structure of the m53a mutant of caulobacter crescentus clps protease adaptor protein in complex with wlfvqrdske peptide
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
80
structure length
80
Chain Sequence
LYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Peptide binding protein
molecule keywords ATP-dependent Clp protease adapter protein clpS
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
source organism Caulobacter vibrioides
total genus 22
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g1bA00
1RQSA 3O2OA 1CTFA 1RQVA 3GQ0A 1MBXC 3O2BA 1MBUC 2WA8A 4YKAA 2W9RA 4YJXA 3GW1A 3DNJA 3G1BA 1R6OC 1MG9A 1R6QC 3O1FA 3G3PA 3O2HA 1LZWA 3O1FB 4YJMA 3GQ1A 1RQUA 2WA9A 1MBVB 1DD4A 1DD3A 3G19A
chains in the Genus database with same CATH superfamily
1RQSA 1KC8X 5HL7W 1Q86X 1QVGV 3GQ0A 3W7XA 3CD6W 1MBXC 4BL3A 5DM7W 2ZJQW 1VQKW 5GAGa 3ZFZA 4YKAA 5GW7A 4BL2A 3CCUW 2OTLW 1MG9A 5JVHW 2OTJW 3OW2V 3W7SA 3W7WA 1Q82X 4IOAW 1RQUA 1VQ6W 1MBVB 3W7UA 3PIOW 1S72W 3I56W 3J7ZZ 5JVGW 2QA4W 5M18A 3CC7W 3I55W 5M1AA 4CJNA 1RQVA 4WCEW 3O2BA 1MBUC 3CC2W 3CCQW 4YJXA 1VQLW 3G6EW 3GW1A 3W7TA 4WFBW 3G1BA 1VQ4W 1R6QC 3O1FA 3CMAW 1YITW 1KD1X 4WF9W 1YI2W 1N8RX 3CF5W 1VQNW 3GQ1A 5M19A 3CPWV 3PIPW 1NJIX 3CCJW 3CCRW 1VQPW 1DD3A 3CCLW 3O2OA 3D3IA 1M1KX 1MWUA 3DLLW 1VQMW 4U67W 1MWRA 3CC4W 3CCMW 1KQSV 1K9MX 2W9RA 1VQ7W 2ZJPW 1VQOW 4UY8Z 1R6OC 1M90X 3O1FB 4IOCW 1YJWW 5GAHa 5GAEa 1VQ9W 4CPKA 1K8AX 3G4SW 2WA9A 5DM6W 1MWTA 1VQ5W 1MWSA 1VQQA 1YJNW 1QVFV 3CXCV 3G19A 4IO9W 1CTFA 1Q7YX 3CCVW 5GADa 5CA3A 2ZJRW 2WA8A 3CMEW 3CCEW 4WFAW 3DNJA 3G3PA 3O2HA 3CCSW 1YHQW 1LZWA 1VQ8W 3ZG5A 4YJMA 1JJ2V 1K73X 3G71W 1YIJW 1DD4A 4DKIA 1W2BV 1Q81X 1YJ9W 1BXYA 4WFNW 2QEXW 3ZG0A
chains in the Genus database with same CATH topology
1RQSA 3O2OA 1CTFA 1RQVA 3GQ0A 1MBXC 3O2BA 1MBUC 2WA8A 4YKAA 2W9RA 4YJXA 3GW1A 3DNJA 3G1BA 1R6OC 1MG9A 1R6QC 3O1FA 3G3PA 3O2HA 1LZWA 3O1FB 4YJMA 3GQ1A 1RQUA 2WA9A 1MBVB 1DD4A 1DD3A 3G19A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RQS A;  3O2O A;  1CTF A;  1RQV A;  3GQ0 A;  1MBX C;  3O2B A;  1MBU C;  2WA8 A;  4YKA A;  2W9R A;  4YJX A;  3GW1 A;  3DNJ A;  3G1B A;  1R6O C;  1MG9 A;  1R6Q C;  3O1F A;  3G3P A;  3O2H A;  1LZW A;  3O1F B;  4YJM A;  3GQ1 A;  1RQU A;  2WA9 A;  1MBV B;  1DD4 A;  1DD3 A;  3G19 A; 
#chains in the Genus database with same CATH topology
 1RQS A;  1KC8 X;  5HL7 W;  1Q86 X;  1QVG V;  3GQ0 A;  3W7X A;  3CD6 W;  1MBX C;  4BL3 A;  5DM7 W;  2ZJQ W;  1VQK W;  5GAG a;  3ZFZ A;  4YKA A;  5GW7 A;  4BL2 A;  3CCU W;  2OTL W;  1MG9 A;  5JVH W;  2OTJ W;  3OW2 V;  3W7S A;  3W7W A;  1Q82 X;  4IOA W;  1RQU A;  1VQ6 W;  1MBV B;  3W7U A;  3PIO W;  1S72 W;  3I56 W;  3J7Z Z;  5JVG W;  2QA4 W;  5M18 A;  3CC7 W;  3I55 W;  5M1A A;  4CJN A;  1RQV A;  4WCE W;  3O2B A;  1MBU C;  3CC2 W;  3CCQ W;  4YJX A;  1VQL W;  3G6E W;  3GW1 A;  3W7T A;  4WFB W;  3G1B A;  1VQ4 W;  1R6Q C;  3O1F A;  3CMA W;  1YIT W;  1KD1 X;  4WF9 W;  1YI2 W;  1N8R X;  3CF5 W;  1VQN W;  3GQ1 A;  5M19 A;  3CPW V;  3PIP W;  1NJI X;  3CCJ W;  3CCR W;  1VQP W;  1DD3 A;  3CCL W;  3O2O A;  3D3I A;  1M1K X;  1MWU A;  3DLL W;  1VQM W;  4U67 W;  1MWR A;  3CC4 W;  3CCM W;  1KQS V;  1K9M X;  2W9R A;  1VQ7 W;  2ZJP W;  1VQO W;  4UY8 Z;  1R6O C;  1M90 X;  3O1F B;  4IOC W;  1YJW W;  5GAH a;  5GAE a;  1VQ9 W;  4CPK A;  1K8A X;  3G4S W;  2WA9 A;  5DM6 W;  1MWT A;  1VQ5 W;  1MWS A;  1VQQ A;  1YJN W;  1QVF V;  3CXC V;  3G19 A;  4IO9 W;  1CTF A;  1Q7Y X;  3CCV W;  5GAD a;  5CA3 A;  2ZJR W;  2WA8 A;  3CME W;  3CCE W;  4WFA W;  3DNJ A;  3G3P A;  3O2H A;  3CCS W;  1YHQ W;  1LZW A;  1VQ8 W;  3ZG5 A;  4YJM A;  1JJ2 V;  1K73 X;  3G71 W;  1YIJ W;  1DD4 A;  4DKI A;  1W2B V;  1Q81 X;  1YJ9 W;  1BXY A;  4WFN W;  2QEX W;  3ZG0 A; 
#chains in the Genus database with same CATH homology
 1RQS A;  3O2O A;  1CTF A;  1RQV A;  3GQ0 A;  1MBX C;  3O2B A;  1MBU C;  2WA8 A;  4YKA A;  2W9R A;  4YJX A;  3GW1 A;  3DNJ A;  3G1B A;  1R6O C;  1MG9 A;  1R6Q C;  3O1F A;  3G3P A;  3O2H A;  1LZW A;  3O1F B;  4YJM A;  3GQ1 A;  1RQU A;  2WA9 A;  1MBV B;  1DD4 A;  1DD3 A;  3G19 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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