3G4OA

Crystal structure of the activated aerolysin mutant h132n
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
461
structure length
439
Chain Sequence
EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNNSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLIPLDAQELSGLGFNNVSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dual chaperone role of the C-terminal propeptide in folding and oligomerization of the pore-forming toxin aerolysin.
pubmed doi rcsb
molecule tags Toxin
source organism Aeromonas hydrophila
molecule keywords Aerolysin
total genus 106
structure length 439
sequence length 461
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01117 Aerolysin Aerolysin toxin
A PF03440 APT Aerolysin/Pertussis toxin (APT) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.15.10 Mainly Beta Beta Complex Proaerolysin; Chain A, domain 3 Proaerolysin, chain A, domain 3 3g4oA03
3.10.40.10 Alpha Beta Roll Pertussis Toxin; Chain B, domain 1 Aerolysin/Pertussis toxin (APT), N-terminal domain 3g4oA01
3.30.412.10 Alpha Beta 2-Layer Sandwich Proaerolysin; Chain A, domain 2 Proaerolysin, chain A, domain 2 3g4oA02
1PTOH 3C0OA 1Z52A 3C0NA 3G4NA 1W3FA 1W3GA 3ZJXA 3C0MA 1UYJA 1PRTC 1PRTB 3G4OA 1PTOC 1PTOB 1W3AA 2D42A 1PREA 1BCPC 1BCPB
chains in the Genus database with same CATH superfamily
1PTOH 3C0OA 1Z52A 3C0NA 3G4NA 1W3FA 1W3GA 3ZJXA 3C0MA 1UYJA 1PRTC 1PRTB 3G4OA 1PTOC 1PTOB 1W3AA 2D42A 1PREA 1BCPC 1BCPB
chains in the Genus database with same CATH topology
1PTOH 3C0OA 1Z52A 3C0NA 3G4NA 1W3FA 1W3GA 3ZJXA 3C0MA 1UYJA 1PRTC 1PRTB 3G4OA 1PTOC 1PTOB 1W3AA 2D42A 1PREA 1BCPC 1BCPB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PTO H;  3C0O A;  1Z52 A;  3C0N A;  3G4N A;  1W3F A;  1W3G A;  3ZJX A;  3C0M A;  1UYJ A;  1PRT C;  1PRT B;  3G4O A;  1PTO C;  1PTO B;  1W3A A;  2D42 A;  1PRE A;  1BCP C;  1BCP B; 
#chains in the Genus database with same CATH topology
 1PTO H;  3C0O A;  1Z52 A;  3C0N A;  3G4N A;  1W3F A;  1W3G A;  3ZJX A;  3C0M A;  1UYJ A;  1PRT C;  1PRT B;  3G4O A;  1PTO C;  1PTO B;  1W3A A;  2D42 A;  1PRE A;  1BCP C;  1BCP B; 
#chains in the Genus database with same CATH homology
 1PTO H;  3C0O A;  1Z52 A;  3C0N A;  3G4N A;  1W3F A;  1W3G A;  3ZJX A;  3C0M A;  1UYJ A;  1PRT C;  1PRT B;  3G4O A;  1PTO C;  1PTO B;  1W3A A;  2D42 A;  1PRE A;  1BCP C;  1BCP B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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