3G6EE

Co-crystal structure of homoharringtonine bound to the large ribosomal subunit
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome.
pubmed doi rcsb
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2009-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3g6eE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3g6eE01
4WFNE 1VQ6E 4IOCE 3CCVE 4WCEE 3CCEE 3J7ZG 1YJ9E 3I55E 5GAEG 5AN9B 1VQNE 3CF5E 3I56E 5DM6E 3CPWE 2ZJQE 2ZJRE 5MLCH 1QVGE 1M1KG 1K9MG 1N8RG 1VQ9E 3CD6E 1YJNE 3CCJE 1VQKE 2OTJE 3CCUE 5JVGE 1YIJE 2ZJPE 1QVFE 1YHQE 4UY8G 4IO9E 1YITE 1VQ4E 3CMEE 3G6EE 1M90G 4U67E 3CC4E 3CCME 1KD1G 1VQ5E 2CQLA 5HL7E 3PIOE 3CCLE 5GAGG 1VQLE 3CCSE 2OTLE 3CCRE 3G71E 3CMAE 1K73G 2QEXE 5H1SI 1YI2E 5DM7E 5JVHE 1W2BE 3PIPE 1VQME 1NJIG 4IOAE 3CCQE 1Q86G 3OW2E 1JJ2E 1KQSE 1KC8G 3G4SE 1Q7YG 1VQPE 1YJWE 1VQOE 1Q82G 1VQ7E 1S72E 4WF9E 1VQ8E 3DLLE 1RL6A 4WFBE 1Q81G 1K8AG 2QA4E 3CXCE 5GADG 4WFAE 3CC2E 3CC7E 5GAHG
chains in the Genus database with same CATH superfamily
2OY8A 4WFNE 1VQ6E 4IOCE 3CCVE 4WCEE 3CCEE 1P4PA 3J7ZG 2OL6O 1YJ9E 3I55E 5GAEG 5AN9B 1VQNE 3CF5E 2G8CO 3I56E 5DM6E 3CPWE 2ZJQE 3AUMO 2ZJRE 5MLCH 1QVGE 1M1KG 1K9MG 1N8RG 1VQ9E 2OL8O 3CD6E 1YJNE 2OY1O 3CCJE 1VQKE 2OTJE 5B2AO 3CCUE 5JVGE 1YIJE 2ZJPE 1QVFE 1YHQE 4UY8G 4IO9E 1YITE 1VQ4E 2OYBO 3CMEE 3G6EE 1M90G 2OY7A 4U67E 3CC4E 3CCME 2OL7A 1KD1G 1VQ5E 1FJ1E 2CQLA 5HL7E 3EC5A 5B10O 3PIOE 3CKFA 2FKGA 3CCLE 5GAGG 2AF5A 3IG9A 1VQLE 5B11O 3CCSE 2OTLE 3CCRE 3G71E 3CMAE 1K73G 2QEXE 2I5ZO 5H1SI 2OY5O 1YI2E 5DM7E 5JVHE 1W2BE 3PIPE 1VQME 3IGEA 1NJIG 1RJLC 3CCQE 1Q86G 4IOAE 3OW2E 1JJ2E 1KQSE 1KC8G 2HKDA 3CKGA 3G4SE 1Q7YG 5B3MO 1VQPE 1YJWE 1VQOE 1Q82G 1VQ7E 1S72E 4WF9E 2I5VO 1VQ8E 3DLLE 1RL6A 4WFBE 2PI3O 1Q81G 1K8AG 2FKJA 2QA4E 3CXCE 5GADG 4WFAE 1OSPO 3CC2E 3CC7E 5GAHG
chains in the Genus database with same CATH topology
4WFNE 1VQ6E 4IOCE 3CCVE 4WCEE 3CCEE 3J7ZG 1YJ9E 3I55E 5GAEG 5AN9B 1VQNE 3CF5E 3I56E 5DM6E 3CPWE 2ZJQE 2ZJRE 5MLCH 1QVGE 1M1KG 1K9MG 1N8RG 1VQ9E 3CD6E 1YJNE 3CCJE 1VQKE 2OTJE 3CCUE 5JVGE 1YIJE 2ZJPE 1QVFE 1YHQE 4UY8G 4IO9E 1YITE 1VQ4E 3CMEE 3G6EE 1M90G 4U67E 3CC4E 3CCME 1KD1G 1VQ5E 2CQLA 5HL7E 3PIOE 3CCLE 5GAGG 1VQLE 3CCSE 2OTLE 3CCRE 3G71E 3CMAE 1K73G 2QEXE 5H1SI 1YI2E 5DM7E 5JVHE 1W2BE 3PIPE 1VQME 1NJIG 4IOAE 3CCQE 1Q86G 3OW2E 1JJ2E 1KQSE 1KC8G 3G4SE 1Q7YG 1VQPE 1YJWE 1VQOE 1Q82G 1VQ7E 1S72E 4WF9E 1VQ8E 3DLLE 1RL6A 4WFBE 1Q81G 1K8AG 2QA4E 3CXCE 5GADG 4WFAE 3CC2E 3CC7E 5GAHG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFN E;  1VQ6 E;  4IOC E;  3CCV E;  4WCE E;  3CCE E;  3J7Z G;  1YJ9 E;  3I55 E;  5GAE G;  5AN9 B;  1VQN E;  3CF5 E;  3I56 E;  5DM6 E;  3CPW E;  2ZJQ E;  2ZJR E;  5MLC H;  1QVG E;  1M1K G;  1K9M G;  1N8R G;  1VQ9 E;  3CD6 E;  1YJN E;  3CCJ E;  1VQK E;  2OTJ E;  3CCU E;  5JVG E;  1YIJ E;  2ZJP E;  1QVF E;  1YHQ E;  4UY8 G;  4IO9 E;  1YIT E;  1VQ4 E;  3CME E;  3G6E E;  1M90 G;  4U67 E;  3CC4 E;  3CCM E;  1KD1 G;  1VQ5 E;  2CQL A;  5HL7 E;  3PIO E;  3CCL E;  5GAG G;  1VQL E;  3CCS E;  2OTL E;  3CCR E;  3G71 E;  3CMA E;  1K73 G;  2QEX E;  5H1S I;  1YI2 E;  5DM7 E;  5JVH E;  1W2B E;  3PIP E;  1VQM E;  1NJI G;  4IOA E;  3CCQ E;  1Q86 G;  3OW2 E;  1JJ2 E;  1KQS E;  1KC8 G;  3G4S E;  1Q7Y G;  1VQP E;  1YJW E;  1VQO E;  1Q82 G;  1VQ7 E;  1S72 E;  4WF9 E;  1VQ8 E;  3DLL E;  1RL6 A;  4WFB E;  1Q81 G;  1K8A G;  2QA4 E;  3CXC E;  5GAD G;  4WFA E;  3CC2 E;  3CC7 E;  5GAH G; 
#chains in the Genus database with same CATH topology
 2OY8 A;  4WFN E;  1VQ6 E;  4IOC E;  3CCV E;  4WCE E;  3CCE E;  1P4P A;  3J7Z G;  2OL6 O;  1YJ9 E;  3I55 E;  5GAE G;  5AN9 B;  1VQN E;  3CF5 E;  2G8C O;  3I56 E;  5DM6 E;  3CPW E;  2ZJQ E;  3AUM O;  2ZJR E;  5MLC H;  1QVG E;  1M1K G;  1K9M G;  1N8R G;  1VQ9 E;  2OL8 O;  3CD6 E;  1YJN E;  2OY1 O;  3CCJ E;  1VQK E;  2OTJ E;  5B2A O;  3CCU E;  5JVG E;  1YIJ E;  2ZJP E;  1QVF E;  1YHQ E;  4UY8 G;  4IO9 E;  1YIT E;  1VQ4 E;  2OYB O;  3CME E;  3G6E E;  1M90 G;  2OY7 A;  4U67 E;  3CC4 E;  3CCM E;  2OL7 A;  1KD1 G;  1VQ5 E;  1FJ1 E;  2CQL A;  5HL7 E;  3EC5 A;  5B10 O;  3PIO E;  3CKF A;  2FKG A;  3CCL E;  5GAG G;  2AF5 A;  3IG9 A;  1VQL E;  5B11 O;  3CCS E;  2OTL E;  3CCR E;  3G71 E;  3CMA E;  1K73 G;  2QEX E;  2I5Z O;  5H1S I;  2OY5 O;  1YI2 E;  5DM7 E;  5JVH E;  1W2B E;  3PIP E;  1VQM E;  3IGE A;  1NJI G;  1RJL C;  3CCQ E;  1Q86 G;  4IOA E;  3OW2 E;  1JJ2 E;  1KQS E;  1KC8 G;  2HKD A;  3CKG A;  3G4S E;  1Q7Y G;  5B3M O;  1VQP E;  1YJW E;  1VQO E;  1Q82 G;  1VQ7 E;  1S72 E;  4WF9 E;  2I5V O;  1VQ8 E;  3DLL E;  1RL6 A;  4WFB E;  2PI3 O;  1Q81 G;  1K8A G;  2FKJ A;  2QA4 E;  3CXC E;  5GAD G;  4WFA E;  1OSP O;  3CC2 E;  3CC7 E;  5GAH G; 
#chains in the Genus database with same CATH homology
 4WFN E;  1VQ6 E;  4IOC E;  3CCV E;  4WCE E;  3CCE E;  3J7Z G;  1YJ9 E;  3I55 E;  5GAE G;  5AN9 B;  1VQN E;  3CF5 E;  3I56 E;  5DM6 E;  3CPW E;  2ZJQ E;  2ZJR E;  5MLC H;  1QVG E;  1M1K G;  1K9M G;  1N8R G;  1VQ9 E;  3CD6 E;  1YJN E;  3CCJ E;  1VQK E;  2OTJ E;  3CCU E;  5JVG E;  1YIJ E;  2ZJP E;  1QVF E;  1YHQ E;  4UY8 G;  4IO9 E;  1YIT E;  1VQ4 E;  3CME E;  3G6E E;  1M90 G;  4U67 E;  3CC4 E;  3CCM E;  1KD1 G;  1VQ5 E;  2CQL A;  5HL7 E;  3PIO E;  3CCL E;  5GAG G;  1VQL E;  3CCS E;  2OTL E;  3CCR E;  3G71 E;  3CMA E;  1K73 G;  2QEX E;  5H1S I;  1YI2 E;  5DM7 E;  5JVH E;  1W2B E;  3PIP E;  1VQM E;  1NJI G;  4IOA E;  3CCQ E;  1Q86 G;  3OW2 E;  1JJ2 E;  1KQS E;  1KC8 G;  3G4S E;  1Q7Y G;  1VQP E;  1YJW E;  1VQO E;  1Q82 G;  1VQ7 E;  1S72 E;  4WF9 E;  1VQ8 E;  3DLL E;  1RL6 A;  4WFB E;  1Q81 G;  1K8A G;  2QA4 E;  3CXC E;  5GAD G;  4WFA E;  3CC2 E;  3CC7 E;  5GAH G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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