3G6ER

Co-crystal structure of homoharringtonine bound to the large ribosomal subunit
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome.
pubmed doi rcsb
total genus 38
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2009-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3g6eR00
3I55R 1S72R 1VQOR 1K8AS 4U67P 5DM6P 5JVGP 4IOCP 3CCJR 1Q82S 1VQKR 3DLLP 2ZJPP 3G4SR 4WCEP 3CCUR 1Q7YS 1VQ8R 2OTJR 1N8RS 3OW2Q 5GAHT 1KD1S 1KQSQ 5GAGT 3CCVR 2QA4R 2ZJQP 3PIPP 1NJIS 3CCQR 3CC4R 5DM7P 1M1KS 1I4JA 4WFNP 1KC8S 3CCSR 1VQ5R 3J7ZS 3G71R 5H1SU 1YITR 1VQ4R 3CF5P 3CD6R 3J7YT 2OTLR 1K9MS 3G6ER 5JVHP 1VQLR 1YI2R 1VQ6R 1VQPR 5GADT 1VQ9R 4WF9P 3CCMR 3PIOP 3CXCQ 3CCER 1Q86S 1JJ2Q 2ZJRP 3CC2R 1QVFQ 3CMAR 1M90S 5MLCU 1K73S 1BXEA 1YJWR 4IOAP 1W2BQ 3CCLR 1Q81S 1YIJR 3CCRR 1YHQR 3CC7R 3CMER 1VQ7R 1VQMR 1YJ9R 4WFAP 4IO9P 2QEXR 1YJNR 5HL7P 4UY8S 1VQNR 5GAET 4V19W 4WFBP 3I56R 1QVGQ 3CPWQ
chains in the Genus database with same CATH superfamily
3I55R 3HQJA 2WDOA 1S72R 1VQOR 1K8AS 5DM6P 4U67P 5JVGP 4IOCP 3CCJR 1Q82S 1VQKR 3DLLP 1F80A 2WDSA 2ZJPP 3G4SR 4WCEP 2JBZA 3CCUR 1Q7YS 1VQ8R 2OTJR 3NE9A 1N8RS 1NBWA 3OW2Q 5CXDA 5GAHT 1KD1S 1KQSQ 5GAGT 3CCVR 4DXEA 2QA4R 1FTHA 2ZJQP 3PIPP 1NJIS 3CCQR 2C43A 5DM7P 3CC4R 1M1KS 5CMOA 1I4JA 2WATA 3NE1A 4WFNP 1KC8S 4MRTA 3CCSR 1VQ5R 2QG8A 3J7ZS 3G71R 4HC6A 5H1SU 1YITR 1VQ4R 3CF5P 3CD6R 3J7YT 2OTLR 3NE3B 3QMNA 1K9MS 3G6ER 2JCAA 5JVHP 1VQLR 1F7LA 1YI2R 1VQ6R 3HYKA 1VQPR 5GADT 3H7QA 1VQ9R 4WF9P 3CCMR 3PIOP 3CXCQ 3CCER 1Q86S 2BDDA 1JJ2Q 2D0PA 2ZJRP 3CC2R 1QVFQ 3CMAR 1FTEA 1M90S 5MLCU 1K73S 1BXEA 1YJWR 2CG5A 4IOAP 3GWMA 1W2BQ 1FTFA 3CCLR 1F7TA 1Q81S 1YIJR 4JM7A 3CCRR 1YHQR 3CC7R 2WASA 2BYDA 3CMER 3NFDA 1VQ7R 2WASB 1QR0A 1VQMR 1YJ9R 4WFAP 4IO9P 2QEXR 2WDYA 1YJNR 5HL7P 4UY8S 1VQNR 5GAET 4V19W 4WFBP 2D0OA 3I56R 1QVGQ 3CPWQ
chains in the Genus database with same CATH topology
3I55R 1S72R 1VQOR 1K8AS 4U67P 5DM6P 5JVGP 4IOCP 3CCJR 1Q82S 1VQKR 3DLLP 2ZJPP 3G4SR 4WCEP 3CCUR 1Q7YS 1VQ8R 2OTJR 1N8RS 3OW2Q 5GAHT 1KD1S 1KQSQ 5GAGT 3CCVR 2QA4R 2ZJQP 3PIPP 1NJIS 3CCQR 3CC4R 5DM7P 1M1KS 1I4JA 4WFNP 1KC8S 3CCSR 1VQ5R 3J7ZS 3G71R 5H1SU 1YITR 1VQ4R 3CF5P 3CD6R 3J7YT 2OTLR 1K9MS 3G6ER 5JVHP 1VQLR 1YI2R 1VQ6R 1VQPR 5GADT 1VQ9R 4WF9P 3CCMR 3PIOP 3CXCQ 3CCER 1Q86S 1JJ2Q 2ZJRP 3CC2R 1QVFQ 3CMAR 1M90S 5MLCU 1K73S 1BXEA 1YJWR 4IOAP 1W2BQ 3CCLR 1Q81S 1YIJR 3CCRR 1YHQR 3CC7R 3CMER 1VQ7R 1VQMR 1YJ9R 4WFAP 4IO9P 2QEXR 1YJNR 5HL7P 4UY8S 1VQNR 5GAET 4V19W 4WFBP 3I56R 1QVGQ 3CPWQ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I55 R;  1S72 R;  1VQO R;  1K8A S;  4U67 P;  5DM6 P;  5JVG P;  4IOC P;  3CCJ R;  1Q82 S;  1VQK R;  3DLL P;  2ZJP P;  3G4S R;  4WCE P;  3CCU R;  1Q7Y S;  1VQ8 R;  2OTJ R;  1N8R S;  3OW2 Q;  5GAH T;  1KD1 S;  1KQS Q;  5GAG T;  3CCV R;  2QA4 R;  2ZJQ P;  3PIP P;  1NJI S;  3CCQ R;  3CC4 R;  5DM7 P;  1M1K S;  1I4J A;  4WFN P;  1KC8 S;  3CCS R;  1VQ5 R;  3J7Z S;  3G71 R;  5H1S U;  1YIT R;  1VQ4 R;  3CF5 P;  3CD6 R;  3J7Y T;  2OTL R;  1K9M S;  3G6E R;  5JVH P;  1VQL R;  1YI2 R;  1VQ6 R;  1VQP R;  5GAD T;  1VQ9 R;  4WF9 P;  3CCM R;  3PIO P;  3CXC Q;  3CCE R;  1Q86 S;  1JJ2 Q;  2ZJR P;  3CC2 R;  1QVF Q;  3CMA R;  1M90 S;  5MLC U;  1K73 S;  1BXE A;  1YJW R;  4IOA P;  1W2B Q;  3CCL R;  1Q81 S;  1YIJ R;  3CCR R;  1YHQ R;  3CC7 R;  3CME R;  1VQ7 R;  1VQM R;  1YJ9 R;  4WFA P;  4IO9 P;  2QEX R;  1YJN R;  5HL7 P;  4UY8 S;  1VQN R;  5GAE T;  4V19 W;  4WFB P;  3I56 R;  1QVG Q;  3CPW Q; 
#chains in the Genus database with same CATH topology
 3I55 R;  3HQJ A;  2WDO A;  1S72 R;  1VQO R;  1K8A S;  5DM6 P;  4U67 P;  5JVG P;  4IOC P;  3CCJ R;  1Q82 S;  1VQK R;  3DLL P;  1F80 A;  2WDS A;  2ZJP P;  3G4S R;  4WCE P;  2JBZ A;  3CCU R;  1Q7Y S;  1VQ8 R;  2OTJ R;  3NE9 A;  1N8R S;  1NBW A;  3OW2 Q;  5CXD A;  5GAH T;  1KD1 S;  1KQS Q;  5GAG T;  3CCV R;  4DXE A;  2QA4 R;  1FTH A;  2ZJQ P;  3PIP P;  1NJI S;  3CCQ R;  2C43 A;  5DM7 P;  3CC4 R;  1M1K S;  5CMO A;  1I4J A;  2WAT A;  3NE1 A;  4WFN P;  1KC8 S;  4MRT A;  3CCS R;  1VQ5 R;  2QG8 A;  3J7Z S;  3G71 R;  4HC6 A;  5H1S U;  1YIT R;  1VQ4 R;  3CF5 P;  3CD6 R;  3J7Y T;  2OTL R;  3NE3 B;  3QMN A;  1K9M S;  3G6E R;  2JCA A;  5JVH P;  1VQL R;  1F7L A;  1YI2 R;  1VQ6 R;  3HYK A;  1VQP R;  5GAD T;  3H7Q A;  1VQ9 R;  4WF9 P;  3CCM R;  3PIO P;  3CXC Q;  3CCE R;  1Q86 S;  2BDD A;  1JJ2 Q;  2D0P A;  2ZJR P;  3CC2 R;  1QVF Q;  3CMA R;  1FTE A;  1M90 S;  5MLC U;  1K73 S;  1BXE A;  1YJW R;  2CG5 A;  4IOA P;  3GWM A;  1W2B Q;  1FTF A;  3CCL R;  1F7T A;  1Q81 S;  1YIJ R;  4JM7 A;  3CCR R;  1YHQ R;  3CC7 R;  2WAS A;  2BYD A;  3CME R;  3NFD A;  1VQ7 R;  2WAS B;  1QR0 A;  1VQM R;  1YJ9 R;  4WFA P;  4IO9 P;  2QEX R;  2WDY A;  1YJN R;  5HL7 P;  4UY8 S;  1VQN R;  5GAE T;  4V19 W;  4WFB P;  2D0O A;  3I56 R;  1QVG Q;  3CPW Q; 
#chains in the Genus database with same CATH homology
 3I55 R;  1S72 R;  1VQO R;  1K8A S;  4U67 P;  5DM6 P;  5JVG P;  4IOC P;  3CCJ R;  1Q82 S;  1VQK R;  3DLL P;  2ZJP P;  3G4S R;  4WCE P;  3CCU R;  1Q7Y S;  1VQ8 R;  2OTJ R;  1N8R S;  3OW2 Q;  5GAH T;  1KD1 S;  1KQS Q;  5GAG T;  3CCV R;  2QA4 R;  2ZJQ P;  3PIP P;  1NJI S;  3CCQ R;  3CC4 R;  5DM7 P;  1M1K S;  1I4J A;  4WFN P;  1KC8 S;  3CCS R;  1VQ5 R;  3J7Z S;  3G71 R;  5H1S U;  1YIT R;  1VQ4 R;  3CF5 P;  3CD6 R;  3J7Y T;  2OTL R;  1K9M S;  3G6E R;  5JVH P;  1VQL R;  1YI2 R;  1VQ6 R;  1VQP R;  5GAD T;  1VQ9 R;  4WF9 P;  3CCM R;  3PIO P;  3CXC Q;  3CCE R;  1Q86 S;  1JJ2 Q;  2ZJR P;  3CC2 R;  1QVF Q;  3CMA R;  1M90 S;  5MLC U;  1K73 S;  1BXE A;  1YJW R;  4IOA P;  1W2B Q;  3CCL R;  1Q81 S;  1YIJ R;  3CCR R;  1YHQ R;  3CC7 R;  3CME R;  1VQ7 R;  1VQM R;  1YJ9 R;  4WFA P;  4IO9 P;  2QEX R;  1YJN R;  5HL7 P;  4UY8 S;  1VQN R;  5GAE T;  4V19 W;  4WFB P;  3I56 R;  1QVG Q;  3CPW Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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