3G6EW

Co-crystal structure of homoharringtonine bound to the large ribosomal subunit
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome.
pubmed doi rcsb
total genus 50
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2009-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3g6eW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3g6eW01
1VQ7W 1YHQW 3G6EW 3CC2W 1YJ9W 4U67W 4WFBW 3I55W 3CCLW 1VQ5W 1VQ8W 3PIOW 1Q7YX 1VQOW 1M1KX 3G71W 1KQSV 1Q86X 1VQMW 1YJNW 1S72W 3CPWV 1VQKW 1M90X 4IO9W 2QA4W 1NJIX 5GAHa 5GAGa 1Q82X 3CC7W 3G4SW 3PIPW 4IOCW 3CCEW 1W2BV 3CCVW 1KD1X 3CXCV 5HL7W 2ZJPW 3CD6W 1VQPW 4IOAW 5GADa 3CCJW 3CC4W 1YIJW 3CCSW 1YITW 5GAEa 4WFNW 1N8RX 1QVFV 1VQ6W 1YJWW 3DLLW 1JJ2V 4WCEW 3I56W 1VQ9W 1K8AX 1K73X 4WF9W 2QEXW 2ZJQW 5JVHW 2OTJW 3J7ZZ 2OTLW 5DM7W 3OW2V 1QVGV 1VQLW 4WFAW 5JVGW 4UY8Z 1Q81X 1YI2W 1VQ4W 1BXYA 3CCMW 3CCRW 3CCUW 3CCQW 3CMAW 3CMEW 1K9MX 2ZJRW 3CF5W 1VQNW 5DM6W 1KC8X
chains in the Genus database with same CATH superfamily
1VQ7W 1YHQW 5M19A 3W7TA 1RQSA 2W9RA 3ZG0A 3G6EW 3O2OA 3CC2W 1YJ9W 1MBUC 4U67W 3O2BA 4WFBW 3I55W 3CCLW 1MBVB 3O1FB 1VQ5W 1VQ8W 3PIOW 1Q7YX 1VQOW 5M1AA 1M1KX 3G71W 1DD3A 1KQSV 3O1FA 1Q86X 1VQMW 5GW7A 1YJNW 1S72W 3CPWV 1VQKW 4C1NA 1R6OC 1M90X 4IO9W 2QA4W 1NJIX 5GAHa 5GAGa 1Q82X 3CC7W 3G4SW 3DNJA 3PIPW 4IOCW 1LZWA 4CJNA 3CCEW 1CTFA 4YJXA 1MWSA 1W2BV 3D3IA 3W7WA 3CCVW 1KD1X 1RQUA 3CXCV 5HL7W 2ZJPW 2WA8A 3CD6W 1VQPW 4IOAW 5GADa 1MWTA 3CCJW 3CC4W 1YIJW 1MWUA 3CCSW 1YITW 5GAEa 3ZG5A 4YKAA 1DD4A 4WFNW 1N8RX 1QVFV 3G1BA 1VQ6W 1YJWW 3O2HA 3DLLW 1JJ2V 4WCEW 3W7SA 3G3PA 3I56W 1VQ9W 1VQQA 4YJMA 1K8AX 3GQ0A 1K73X 4WF9W 2QEXW 2ZJQW 5JVHW 1R6QC 4BL3A 2OTJW 1MBXC 3W7UA 3ZFZA 1RQVA 3J7ZZ 2OTLW 2WA9A 5DM7W 4BL2A 3OW2V 1QVGV 1VQLW 4WFAW 5JVGW 4UY8Z 1MWRA 1Q81X 1YI2W 3GW1A 3G19A 4DKIA 4CPKA 1VQ4W 1BXYA 3CCMW 3CCRW 3CCUW 3GQ1A 5M18A 3W7XA 3CCQW 3CMAW 3CMEW 1K9MX 5CA3A 2ZJRW 3CF5W 1VQNW 1MG9A 5DM6W 1KC8X
chains in the Genus database with same CATH topology
1VQ7W 1YHQW 3G6EW 3CC2W 1YJ9W 4U67W 4WFBW 3I55W 3CCLW 1VQ5W 1VQ8W 3PIOW 1Q7YX 1VQOW 1M1KX 3G71W 1KQSV 1Q86X 1VQMW 1YJNW 1S72W 3CPWV 1VQKW 4C1NA 1M90X 4IO9W 2QA4W 1NJIX 5GAHa 5GAGa 1Q82X 3CC7W 3G4SW 3PIPW 4IOCW 3CCEW 1W2BV 3CCVW 1KD1X 3CXCV 5HL7W 2ZJPW 3CD6W 1VQPW 4IOAW 5GADa 3CCJW 3CC4W 1YIJW 3CCSW 1YITW 5GAEa 4WFNW 1N8RX 1QVFV 1VQ6W 1YJWW 3DLLW 1JJ2V 4WCEW 3I56W 1VQ9W 1K8AX 1K73X 4WF9W 2QEXW 2ZJQW 5JVHW 2OTJW 3J7ZZ 2OTLW 5DM7W 3OW2V 1QVGV 1VQLW 4WFAW 5JVGW 4UY8Z 1Q81X 1YI2W 1VQ4W 1BXYA 3CCMW 3CCRW 3CCUW 3CCQW 3CMAW 3CMEW 1K9MX 2ZJRW 3CF5W 1VQNW 5DM6W 1KC8X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ7 W;  1YHQ W;  3G6E W;  3CC2 W;  1YJ9 W;  4U67 W;  4WFB W;  3I55 W;  3CCL W;  1VQ5 W;  1VQ8 W;  3PIO W;  1Q7Y X;  1VQO W;  1M1K X;  3G71 W;  1KQS V;  1Q86 X;  1VQM W;  1YJN W;  1S72 W;  3CPW V;  1VQK W;  1M90 X;  4IO9 W;  2QA4 W;  1NJI X;  5GAH a;  5GAG a;  1Q82 X;  3CC7 W;  3G4S W;  3PIP W;  4IOC W;  3CCE W;  1W2B V;  3CCV W;  1KD1 X;  3CXC V;  5HL7 W;  2ZJP W;  3CD6 W;  1VQP W;  4IOA W;  5GAD a;  3CCJ W;  3CC4 W;  1YIJ W;  3CCS W;  1YIT W;  5GAE a;  4WFN W;  1N8R X;  1QVF V;  1VQ6 W;  1YJW W;  3DLL W;  1JJ2 V;  4WCE W;  3I56 W;  1VQ9 W;  1K8A X;  1K73 X;  4WF9 W;  2QEX W;  2ZJQ W;  5JVH W;  2OTJ W;  3J7Z Z;  2OTL W;  5DM7 W;  3OW2 V;  1QVG V;  1VQL W;  4WFA W;  5JVG W;  4UY8 Z;  1Q81 X;  1YI2 W;  1VQ4 W;  1BXY A;  3CCM W;  3CCR W;  3CCU W;  3CCQ W;  3CMA W;  3CME W;  1K9M X;  2ZJR W;  3CF5 W;  1VQN W;  5DM6 W;  1KC8 X; 
#chains in the Genus database with same CATH topology
 1VQ7 W;  1YHQ W;  5M19 A;  3W7T A;  1RQS A;  2W9R A;  3ZG0 A;  3G6E W;  3O2O A;  3CC2 W;  1YJ9 W;  1MBU C;  4U67 W;  3O2B A;  4WFB W;  3I55 W;  3CCL W;  1MBV B;  3O1F B;  1VQ5 W;  1VQ8 W;  3PIO W;  1Q7Y X;  1VQO W;  5M1A A;  1M1K X;  3G71 W;  1DD3 A;  1KQS V;  3O1F A;  1Q86 X;  1VQM W;  5GW7 A;  1YJN W;  1S72 W;  3CPW V;  1VQK W;  4C1N A;  1R6O C;  1M90 X;  4IO9 W;  2QA4 W;  1NJI X;  5GAH a;  5GAG a;  1Q82 X;  3CC7 W;  3G4S W;  3DNJ A;  3PIP W;  4IOC W;  1LZW A;  4CJN A;  3CCE W;  1CTF A;  4YJX A;  1MWS A;  1W2B V;  3D3I A;  3W7W A;  3CCV W;  1KD1 X;  1RQU A;  3CXC V;  5HL7 W;  2ZJP W;  2WA8 A;  3CD6 W;  1VQP W;  4IOA W;  5GAD a;  1MWT A;  3CCJ W;  3CC4 W;  1YIJ W;  1MWU A;  3CCS W;  1YIT W;  5GAE a;  3ZG5 A;  4YKA A;  1DD4 A;  4WFN W;  1N8R X;  1QVF V;  3G1B A;  1VQ6 W;  1YJW W;  3O2H A;  3DLL W;  1JJ2 V;  4WCE W;  3W7S A;  3G3P A;  3I56 W;  1VQ9 W;  1VQQ A;  4YJM A;  1K8A X;  3GQ0 A;  1K73 X;  4WF9 W;  2QEX W;  2ZJQ W;  5JVH W;  1R6Q C;  4BL3 A;  2OTJ W;  1MBX C;  3W7U A;  3ZFZ A;  1RQV A;  3J7Z Z;  2OTL W;  2WA9 A;  5DM7 W;  4BL2 A;  3OW2 V;  1QVG V;  1VQL W;  4WFA W;  5JVG W;  4UY8 Z;  1MWR A;  1Q81 X;  1YI2 W;  3GW1 A;  3G19 A;  4DKI A;  4CPK A;  1VQ4 W;  1BXY A;  3CCM W;  3CCR W;  3CCU W;  3GQ1 A;  5M18 A;  3W7X A;  3CCQ W;  3CMA W;  3CME W;  1K9M X;  5CA3 A;  2ZJR W;  3CF5 W;  1VQN W;  1MG9 A;  5DM6 W;  1KC8 X; 
#chains in the Genus database with same CATH homology
 1VQ7 W;  1YHQ W;  3G6E W;  3CC2 W;  1YJ9 W;  4U67 W;  4WFB W;  3I55 W;  3CCL W;  1VQ5 W;  1VQ8 W;  3PIO W;  1Q7Y X;  1VQO W;  1M1K X;  3G71 W;  1KQS V;  1Q86 X;  1VQM W;  1YJN W;  1S72 W;  3CPW V;  1VQK W;  4C1N A;  1M90 X;  4IO9 W;  2QA4 W;  1NJI X;  5GAH a;  5GAG a;  1Q82 X;  3CC7 W;  3G4S W;  3PIP W;  4IOC W;  3CCE W;  1W2B V;  3CCV W;  1KD1 X;  3CXC V;  5HL7 W;  2ZJP W;  3CD6 W;  1VQP W;  4IOA W;  5GAD a;  3CCJ W;  3CC4 W;  1YIJ W;  3CCS W;  1YIT W;  5GAE a;  4WFN W;  1N8R X;  1QVF V;  1VQ6 W;  1YJW W;  3DLL W;  1JJ2 V;  4WCE W;  3I56 W;  1VQ9 W;  1K8A X;  1K73 X;  4WF9 W;  2QEX W;  2ZJQ W;  5JVH W;  2OTJ W;  3J7Z Z;  2OTL W;  5DM7 W;  3OW2 V;  1QVG V;  1VQL W;  4WFA W;  5JVG W;  4UY8 Z;  1Q81 X;  1YI2 W;  1VQ4 W;  1BXY A;  3CCM W;  3CCR W;  3CCU W;  3CCQ W;  3CMA W;  3CME W;  1K9M X;  2ZJR W;  3CF5 W;  1VQN W;  5DM6 W;  1KC8 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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