3G71U

Co-crystal structure of bruceantin bound to the large ribosomal subunit
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome.
pubmed doi rcsb
total genus 10
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2009-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 3g71U00
2OTLU 1KD1V 1NJIV 3CXCT 1VQ8U 3CCJU 5AN9G 1VQLU 2QEXU 3CC4U 1Q86V 1VQ6U 3I56U 1VQOU 3CCUU 1YHQU 1JJ2T 3CCMU 1YI2U 1QVGT 3CCQU 1N8RV 2QA4U 1S72U 1YJ9U 3CD6U 2OTJU 1K73V 3G6EU 1VQPU 1VQ7U 3I55U 1VQ5U 1VQNU 1VQMU 1K9MV 1M90V 1QVFT 1Q7YV 3CCSU 1YIJU 3CCLU 1VQ9U 1KC8V 1M1KV 1YJNU 1YJWU 3CC7U 1Q81V 3CCEU 3OW2T 1Q82V 1W2BT 3G4SU 1VQKU 3CPWT 3CC2U 3CCVU 1VQ4U 1YITU 1KQST 1K8AV 3G71U 3CMAU 3CCRU 3CMEU
chains in the Genus database with same CATH superfamily
1KD1V 1VQ8U 1N8RV 5DM6U 1K73V 3ABOA 1M90V 1K9MV 1Q7YV 1VQ9U 3CC7U 1M1KV 1YJNU 1W2BT 3CC2U 1VQ4U 2QEZA 1JJDA 3CMAU 4UY8X 3CXCT 2JZ6A 3CC4U 1Q86V 3I56U 1YI2U 3CCQU 1YJ9U 1VQ5U 1VQNU 3I55U 3J7ZX 1QVFT 3CCSU 3CCLU 1Q81V 1KQST 3AO0A 1K8AV 2OTLU 3ANYA 1NJIV 3ABQA 5AN9G 1VQLU 1VQ6U 1YHQU 1JJ2T 2OTJU 5H1SY 1VQ7U 5MLCY 1YIJU 1KC8V 3CCEU 3ABSA 3CPWT 1YITU 3G71U 3CCRU 3ABRA 3CCJU 2QEXU 1VQOU 3CCUU 3CCMU 1QVGT 2QA4U 1S72U 3CD6U 3G6EU 1VQPU 1VQMU 1YJWU 3OW2T 1Q82V 3G4SU 1VQKU 3CCVU 3CMEU
chains in the Genus database with same CATH topology
2OTLU 1KD1V 1NJIV 3CXCT 1VQ8U 3CCJU 5AN9G 1VQLU 2QEXU 3CC4U 1Q86V 1VQ6U 3I56U 1VQOU 3CCUU 1YHQU 1JJ2T 3CCMU 1YI2U 1QVGT 3CCQU 1N8RV 2QA4U 1S72U 1YJ9U 3CD6U 2OTJU 1K73V 3G6EU 1VQPU 1VQ7U 3I55U 1VQ5U 1VQNU 1VQMU 1K9MV 1M90V 1QVFT 1Q7YV 3CCSU 1YIJU 3CCLU 1VQ9U 1KC8V 1M1KV 1YJNU 1YJWU 3CC7U 1Q81V 3CCEU 3OW2T 1Q82V 1W2BT 3G4SU 1VQKU 3CPWT 3CC2U 3CCVU 1VQ4U 1YITU 1KQST 1K8AV 3G71U 1JJDA 3CMAU 3CCRU 3CMEU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OTL U;  1KD1 V;  1NJI V;  3CXC T;  1VQ8 U;  3CCJ U;  5AN9 G;  1VQL U;  2QEX U;  3CC4 U;  1Q86 V;  1VQ6 U;  3I56 U;  1VQO U;  3CCU U;  1YHQ U;  1JJ2 T;  3CCM U;  1YI2 U;  1QVG T;  3CCQ U;  1N8R V;  2QA4 U;  1S72 U;  1YJ9 U;  3CD6 U;  2OTJ U;  1K73 V;  3G6E U;  1VQP U;  1VQ7 U;  3I55 U;  1VQ5 U;  1VQN U;  1VQM U;  1K9M V;  1M90 V;  1QVF T;  1Q7Y V;  3CCS U;  1YIJ U;  3CCL U;  1VQ9 U;  1KC8 V;  1M1K V;  1YJN U;  1YJW U;  3CC7 U;  1Q81 V;  3CCE U;  3OW2 T;  1Q82 V;  1W2B T;  3G4S U;  1VQK U;  3CPW T;  3CC2 U;  3CCV U;  1VQ4 U;  1YIT U;  1KQS T;  1K8A V;  3G71 U;  3CMA U;  3CCR U;  3CME U; 
#chains in the Genus database with same CATH topology
 1KD1 V;  1VQ8 U;  1N8R V;  5DM6 U;  1K73 V;  3ABO A;  1M90 V;  1K9M V;  1Q7Y V;  1VQ9 U;  3CC7 U;  1M1K V;  1YJN U;  1W2B T;  3CC2 U;  1VQ4 U;  2QEZ A;  1JJD A;  3CMA U;  4UY8 X;  3CXC T;  2JZ6 A;  3CC4 U;  1Q86 V;  3I56 U;  1YI2 U;  3CCQ U;  1YJ9 U;  1VQ5 U;  1VQN U;  3I55 U;  3J7Z X;  1QVF T;  3CCS U;  3CCL U;  1Q81 V;  1KQS T;  3AO0 A;  1K8A V;  2OTL U;  3ANY A;  1NJI V;  3ABQ A;  5AN9 G;  1VQL U;  1VQ6 U;  1YHQ U;  1JJ2 T;  2OTJ U;  5H1S Y;  1VQ7 U;  5MLC Y;  1YIJ U;  1KC8 V;  3CCE U;  3ABS A;  3CPW T;  1YIT U;  3G71 U;  3CCR U;  3ABR A;  3CCJ U;  2QEX U;  1VQO U;  3CCU U;  3CCM U;  1QVG T;  2QA4 U;  1S72 U;  3CD6 U;  3G6E U;  1VQP U;  1VQM U;  1YJW U;  3OW2 T;  1Q82 V;  3G4S U;  1VQK U;  3CCV U;  3CME U; 
#chains in the Genus database with same CATH homology
 2OTL U;  1KD1 V;  1NJI V;  3CXC T;  1VQ8 U;  3CCJ U;  5AN9 G;  1VQL U;  2QEX U;  3CC4 U;  1Q86 V;  1VQ6 U;  3I56 U;  1VQO U;  3CCU U;  1YHQ U;  1JJ2 T;  3CCM U;  1YI2 U;  1QVG T;  3CCQ U;  1N8R V;  2QA4 U;  1S72 U;  1YJ9 U;  3CD6 U;  2OTJ U;  1K73 V;  3G6E U;  1VQP U;  1VQ7 U;  3I55 U;  1VQ5 U;  1VQN U;  1VQM U;  1K9M V;  1M90 V;  1QVF T;  1Q7Y V;  3CCS U;  1YIJ U;  3CCL U;  1VQ9 U;  1KC8 V;  1M1K V;  1YJN U;  1YJW U;  3CC7 U;  1Q81 V;  3CCE U;  3OW2 T;  1Q82 V;  1W2B T;  3G4S U;  1VQK U;  3CPW T;  3CC2 U;  3CCV U;  1VQ4 U;  1YIT U;  1KQS T;  1K8A V;  3G71 U;  1JJD A;  3CMA U;  3CCR U;  3CME U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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