3G7KA

Crystal structure of methylitaconate-delta-isomerase
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
379
structure length
379
Chain Sequence
SDQMRIPCVIMRAGTSKGIFLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTFAQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNAPELMDFSDTAGAATGKVLPTGNVVDVLSTSKGDIDVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEASEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSAARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYVEKAKLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and putative mechanism of 3-methylitaconate-delta-isomerase from Eubacterium barkeri
pubmed doi rcsb
source organism Eubacterium barkeri
molecule tags Isomerase
molecule keywords 3-methylitaconate isomerase
total genus 101
structure length 379
sequence length 379
chains with identical sequence B, C, D
ec nomenclature ec 5.3.3.6: Methylitaconate Delta-isomerase.
pdb deposition date 2009-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04303 PrpF PrpF protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA01
1XUBA 1U0KA 1U1WA 5HA4A 1U1VA 2H9FA 2OTNA 2Q9HA 1BWZA 2Q9JA 3G7KA 5IWEA 4K7XA 3EDNA 2GKJA 4DUNA 4JUUA 5M47A 1YM5A 5H2GA 3FVEA 1QY9A 1T6KA 4Q2HA 2GKEA 1SDJA 1W61A 5H2YA 1TM0A 4K8LA 1QYAA 1GQZA 4IK0A 1U1XA 4Q60A 4IJZA 4J9WA 3EJXA 4K7GB 1S7JA 4LB0A 2AZPA 2PVZA 3EKMA 1W62A 4JCIA 4JD7A 2PW0A 1XUAA 4JBDA 4J9XA
chains in the Genus database with same CATH superfamily
1U1WA 5HA4A 1U1VA 3G7KA 1K23A 4K7XA 4DUNA 1YM5A 3W5WA 2QB7A 3PTJA 2KW7A 2HAWA 4K8LA 4Q60A 2EB0A 3EJXA 4LB0A 3G98A 4JCIA 4JD7A 4JBDA 1U0KA 4OA3A 3PW9A 2H9FA 2OTNA 2IW4A 2Q9JA 4GL6A 5H2GA 3FVEA 3IGHX 3ICJA 4Q2HA 1GQZA 4IK0A 4LG3A 4IJZA 2KPTA 4K7GB 1S7JA 2MPBA 2ENXA 2AZPA 4LS9A 1I74A 2PW0A 1XUBA 2ZVFA 2Q9HA 1BWZA 5IWEA 2QB8A 3EDNA 4JUUA 3PVHA 1T6KA 4PY9A 1SDJA 5H2YA 2LT2A 1U1XA 2ZXRA 5ANPA 1IR6A 2PVZA 2ZXPA 1W62A 4RPAA 4J9XA 1K20A 2YMAA 2QB6A 2GKJA 5M47A 1QY9A 2ZXOA 2GKEA 1W61A 1TM0A 1QYAA 1WPMA 4J9WA 3WQZA 3EKMA 1XUAA 1WPPA 3DEVA
chains in the Genus database with same CATH topology
1U1WA 5HA4A 1U1VA 3G7KA 1K23A 4K7XA 4DUNA 1YM5A 3W5WA 2QB7A 3PTJA 2KW7A 2HAWA 4K8LA 4Q60A 2EB0A 3EJXA 4LB0A 3G98A 4JCIA 4JD7A 4JBDA 1U0KA 4OA3A 3PW9A 2H9FA 2OTNA 2IW4A 2Q9JA 4GL6A 5H2GA 3FVEA 3IGHX 3ICJA 4Q2HA 1GQZA 4IK0A 4LG3A 4IJZA 2KPTA 4K7GB 1S7JA 2MPBA 2ENXA 2AZPA 4LS9A 1I74A 2PW0A 1XUBA 2ZVFA 2Q9HA 1BWZA 5IWEA 2QB8A 3EDNA 4JUUA 3PVHA 1T6KA 4PY9A 1SDJA 5H2YA 2LT2A 1U1XA 2ZXRA 5ANPA 1IR6A 2PVZA 2ZXPA 1W62A 4RPAA 4J9XA 1K20A 2YMAA 2QB6A 2GKJA 5M47A 1QY9A 2ZXOA 2GKEA 1W61A 1TM0A 1QYAA 1WPMA 4J9WA 3WQZA 3EKMA 1XUAA 1WPPA 3DEVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XUB A;  1U0K A;  1U1W A;  5HA4 A;  1U1V A;  2H9F A;  2OTN A;  2Q9H A;  1BWZ A;  2Q9J A;  3G7K A;  5IWE A;  4K7X A;  3EDN A;  2GKJ A;  4DUN A;  4JUU A;  5M47 A;  1YM5 A;  5H2G A;  3FVE A;  1QY9 A;  1T6K A;  4Q2H A;  2GKE A;  1SDJ A;  1W61 A;  5H2Y A;  1TM0 A;  4K8L A;  1QYA A;  1GQZ A;  4IK0 A;  1U1X A;  4Q60 A;  4IJZ A;  4J9W A;  3EJX A;  4K7G B;  1S7J A;  4LB0 A;  2AZP A;  2PVZ A;  3EKM A;  1W62 A;  4JCI A;  4JD7 A;  2PW0 A;  1XUA A;  4JBD A;  4J9X A; 
#chains in the Genus database with same CATH topology
 1U1W A;  5HA4 A;  1U1V A;  3G7K A;  1K23 A;  4K7X A;  4DUN A;  1YM5 A;  3W5W A;  2QB7 A;  3PTJ A;  2KW7 A;  2HAW A;  4K8L A;  4Q60 A;  2EB0 A;  3EJX A;  4LB0 A;  3G98 A;  4JCI A;  4JD7 A;  4JBD A;  1U0K A;  4OA3 A;  3PW9 A;  2H9F A;  2OTN A;  2IW4 A;  2Q9J A;  4GL6 A;  5H2G A;  3FVE A;  3IGH X;  3ICJ A;  4Q2H A;  1GQZ A;  4IK0 A;  4LG3 A;  4IJZ A;  2KPT A;  4K7G B;  1S7J A;  2MPB A;  2ENX A;  2AZP A;  4LS9 A;  1I74 A;  2PW0 A;  1XUB A;  2ZVF A;  2Q9H A;  1BWZ A;  5IWE A;  2QB8 A;  3EDN A;  4JUU A;  3PVH A;  1T6K A;  4PY9 A;  1SDJ A;  5H2Y A;  2LT2 A;  1U1X A;  2ZXR A;  5ANP A;  1IR6 A;  2PVZ A;  2ZXP A;  1W62 A;  4RPA A;  4J9X A;  1K20 A;  2YMA A;  2QB6 A;  2GKJ A;  5M47 A;  1QY9 A;  2ZXO A;  2GKE A;  1W61 A;  1TM0 A;  1QYA A;  1WPM A;  4J9W A;  3WQZ A;  3EKM A;  1XUA A;  1WPP A;  3DEV A; 
#chains in the Genus database with same CATH homology
 1U1W A;  5HA4 A;  1U1V A;  3G7K A;  1K23 A;  4K7X A;  4DUN A;  1YM5 A;  3W5W A;  2QB7 A;  3PTJ A;  2KW7 A;  2HAW A;  4K8L A;  4Q60 A;  2EB0 A;  3EJX A;  4LB0 A;  3G98 A;  4JCI A;  4JD7 A;  4JBD A;  1U0K A;  4OA3 A;  3PW9 A;  2H9F A;  2OTN A;  2IW4 A;  2Q9J A;  4GL6 A;  5H2G A;  3FVE A;  3IGH X;  3ICJ A;  4Q2H A;  1GQZ A;  4IK0 A;  4LG3 A;  4IJZ A;  2KPT A;  4K7G B;  1S7J A;  2MPB A;  2ENX A;  2AZP A;  4LS9 A;  1I74 A;  2PW0 A;  1XUB A;  2ZVF A;  2Q9H A;  1BWZ A;  5IWE A;  2QB8 A;  3EDN A;  4JUU A;  3PVH A;  1T6K A;  4PY9 A;  1SDJ A;  5H2Y A;  2LT2 A;  1U1X A;  2ZXR A;  5ANP A;  1IR6 A;  2PVZ A;  2ZXP A;  1W62 A;  4RPA A;  4J9X A;  1K20 A;  2YMA A;  2QB6 A;  2GKJ A;  5M47 A;  1QY9 A;  2ZXO A;  2GKE A;  1W61 A;  1TM0 A;  1QYA A;  1WPM A;  4J9W A;  3WQZ A;  3EKM A;  1XUA A;  1WPP A;  3DEV A; 
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