3G7KA

Crystal structure of methylitaconate-delta-isomerase
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
379
structure length
379
Chain Sequence
b'SDQMRIPCVIMRAGTSKGIFLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTFAQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNAPELMDFSDTAGAATGKVLPTGNVVDVLSTSKGDIDVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEASEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSAARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYVEKAKLV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 3-methylitaconate isomerase
publication title Crystal structure and putative mechanism of 3-methylitaconate-delta-isomerase from Eubacterium barkeri
pubmed doi rcsb
source organism Eubacterium barkeri
molecule tags Isomerase
total genus 101
structure length 379
sequence length 379
chains with identical sequence B, C, D
ec nomenclature ec 5.3.3.6: Methylitaconate Delta-isomerase.
pdb deposition date 2009-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04303 PrpF PrpF protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA01
1U1WA 1QYAA 2AZPA 4Q60A 1U1VA 4K8LA 5IWEA 1XUAA 2Q9HA 2H9FA 4Q2HA 4IJZA 4JUUA 3EKMA 1YM5A 5HA4A 4K7XA 1T6KA 2PW0A 1GQZA 4K7GB 4DUNA 3FVEA 1SDJA 2OTNA 4JD7A 4LB0A 1U0KA 1XUBA 3EDNA 2PVZA 4J9XA 1W61A 5M47A 1TM0A 1U1XA 5H2GA 4JBDA 3EJXA 2GKEA 4JCIA 3G7KA 2GKJA 1W62A 1S7JA 2Q9JA 4J9WA 4IK0A 5H2YA 1QY9A 1BWZA
chains in the Genus database with same CATH superfamily
2QB7A 4K8LA 2QB6A 5IWEA 4RPAA 1W61A 3IGHX 3W5WA 2ZXOA 5H2GA 4PY9A 2GKEA 3PW9A 2HAWA 3G7KA 3G98A 1W62A 2PW0A 1WPPA 1K23A 5H2YA 1BWZA 4LG3A 2AZPA 4OA3A 2Q9HA 4Q2HA 2EB0A 3EKMA 1YM5A 4K7XA 4K7GB 3FVEA 1SDJA 4JD7A 4LS9A 4LB0A 1U0KA 1XUBA 2KW7A 2ZXPA 3EDNA 2PVZA 4J9XA 3ICJA 3PTJA 2LT2A 1TM0A 3EJXA 1WPMA 1IR6A 3WQZA 2GKJA 4IK0A 1U1WA 4Q60A 3PVHA 4IJZA 4JUUA 5HA4A 1T6KA 1GQZA 4DUNA 2IW4A 2OTNA 2ENXA 2QB8A 5ANPA 1U1XA 4JCIA 4J9WA 2YMAA 1QY9A 5M47A 2KPTA 1QYAA 1U1VA 1XUAA 2H9FA 1I74A 2MPBA 3DEVA 2ZVFA 2ZXRA 1K20A 4JBDA 4GL6A 1S7JA 2Q9JA
chains in the Genus database with same CATH topology
2QB7A 4K8LA 2QB6A 5IWEA 4RPAA 1W61A 3IGHX 3W5WA 2ZXOA 5H2GA 4PY9A 2GKEA 3PW9A 2HAWA 3G7KA 3G98A 1W62A 2PW0A 1WPPA 1K23A 5H2YA 1BWZA 4LG3A 2AZPA 4OA3A 2Q9HA 4Q2HA 2EB0A 3EKMA 1YM5A 4K7XA 4K7GB 3FVEA 1SDJA 4JD7A 4LS9A 4LB0A 1U0KA 1XUBA 2KW7A 2ZXPA 3EDNA 2PVZA 4J9XA 3ICJA 3PTJA 2LT2A 1TM0A 3EJXA 1WPMA 1IR6A 3WQZA 2GKJA 4IK0A 1U1WA 4Q60A 3PVHA 4IJZA 4JUUA 5HA4A 1T6KA 1GQZA 4DUNA 2IW4A 2OTNA 2ENXA 2QB8A 5ANPA 1U1XA 4JCIA 4J9WA 2YMAA 1QY9A 5M47A 2KPTA 1QYAA 1U1VA 1XUAA 2H9FA 1I74A 2MPBA 3DEVA 2ZVFA 2ZXRA 1K20A 4JBDA 4GL6A 1S7JA 2Q9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U1W A;  1QYA A;  2AZP A;  4Q60 A;  1U1V A;  4K8L A;  5IWE A;  1XUA A;  2Q9H A;  2H9F A;  4Q2H A;  4IJZ A;  4JUU A;  3EKM A;  1YM5 A;  5HA4 A;  4K7X A;  1T6K A;  2PW0 A;  1GQZ A;  4K7G B;  4DUN A;  3FVE A;  1SDJ A;  2OTN A;  4JD7 A;  4LB0 A;  1U0K A;  1XUB A;  3EDN A;  2PVZ A;  4J9X A;  1W61 A;  5M47 A;  1TM0 A;  1U1X A;  5H2G A;  4JBD A;  3EJX A;  2GKE A;  4JCI A;  3G7K A;  2GKJ A;  1W62 A;  1S7J A;  2Q9J A;  4J9W A;  4IK0 A;  5H2Y A;  1QY9 A;  1BWZ A; 
#chains in the Genus database with same CATH topology
 2QB7 A;  4K8L A;  2QB6 A;  5IWE A;  4RPA A;  1W61 A;  3IGH X;  3W5W A;  2ZXO A;  5H2G A;  4PY9 A;  2GKE A;  3PW9 A;  2HAW A;  3G7K A;  3G98 A;  1W62 A;  2PW0 A;  1WPP A;  1K23 A;  5H2Y A;  1BWZ A;  4LG3 A;  2AZP A;  4OA3 A;  2Q9H A;  4Q2H A;  2EB0 A;  3EKM A;  1YM5 A;  4K7X A;  4K7G B;  3FVE A;  1SDJ A;  4JD7 A;  4LS9 A;  4LB0 A;  1U0K A;  1XUB A;  2KW7 A;  2ZXP A;  3EDN A;  2PVZ A;  4J9X A;  3ICJ A;  3PTJ A;  2LT2 A;  1TM0 A;  3EJX A;  1WPM A;  1IR6 A;  3WQZ A;  2GKJ A;  4IK0 A;  1U1W A;  4Q60 A;  3PVH A;  4IJZ A;  4JUU A;  5HA4 A;  1T6K A;  1GQZ A;  4DUN A;  2IW4 A;  2OTN A;  2ENX A;  2QB8 A;  5ANP A;  1U1X A;  4JCI A;  4J9W A;  2YMA A;  1QY9 A;  5M47 A;  2KPT A;  1QYA A;  1U1V A;  1XUA A;  2H9F A;  1I74 A;  2MPB A;  3DEV A;  2ZVF A;  2ZXR A;  1K20 A;  4JBD A;  4GL6 A;  1S7J A;  2Q9J A; 
#chains in the Genus database with same CATH homology
 2QB7 A;  4K8L A;  2QB6 A;  5IWE A;  4RPA A;  1W61 A;  3IGH X;  3W5W A;  2ZXO A;  5H2G A;  4PY9 A;  2GKE A;  3PW9 A;  2HAW A;  3G7K A;  3G98 A;  1W62 A;  2PW0 A;  1WPP A;  1K23 A;  5H2Y A;  1BWZ A;  4LG3 A;  2AZP A;  4OA3 A;  2Q9H A;  4Q2H A;  2EB0 A;  3EKM A;  1YM5 A;  4K7X A;  4K7G B;  3FVE A;  1SDJ A;  4JD7 A;  4LS9 A;  4LB0 A;  1U0K A;  1XUB A;  2KW7 A;  2ZXP A;  3EDN A;  2PVZ A;  4J9X A;  3ICJ A;  3PTJ A;  2LT2 A;  1TM0 A;  3EJX A;  1WPM A;  1IR6 A;  3WQZ A;  2GKJ A;  4IK0 A;  1U1W A;  4Q60 A;  3PVH A;  4IJZ A;  4JUU A;  5HA4 A;  1T6K A;  1GQZ A;  4DUN A;  2IW4 A;  2OTN A;  2ENX A;  2QB8 A;  5ANP A;  1U1X A;  4JCI A;  4J9W A;  2YMA A;  1QY9 A;  5M47 A;  2KPT A;  1QYA A;  1U1V A;  1XUA A;  2H9F A;  1I74 A;  2MPB A;  3DEV A;  2ZVF A;  2ZXR A;  1K20 A;  4JBD A;  4GL6 A;  1S7J A;  2Q9J A; 
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