3G7KA

Crystal structure of methylitaconate-delta-isomerase
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
379
structure length
379
Chain Sequence
SDQMRIPCVIMRAGTSKGIFLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTFAQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNAPELMDFSDTAGAATGKVLPTGNVVDVLSTSKGDIDVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEASEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSAARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYVEKAKLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and putative mechanism of 3-methylitaconate-delta-isomerase from Eubacterium barkeri
pubmed doi rcsb
source organism Eubacterium barkeri
molecule tags Isomerase
molecule keywords 3-methylitaconate isomerase
total genus 101
structure length 379
sequence length 379
chains with identical sequence B, C, D
ec nomenclature ec 5.3.3.6: Methylitaconate Delta-isomerase.
pdb deposition date 2009-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04303 PrpF PrpF protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3g7kA01
4JCIA 4LB0A 3EJXA 2Q9HA 4J9XA 3G7KA 1U0KA 4K8LA 1XUAA 4K7GB 4DUNA 5H2GA 2PW0A 3EDNA 3EKMA 1W62A 1BWZA 2Q9JA 4JBDA 1U1VA 2H9FA 4JUUA 1SDJA 4J9WA 1S7JA 5M47A 1U1WA 4IK0A 1GQZA 1W61A 1U1XA 4JD7A 4IJZA 1T6KA 4K7XA 4Q60A 2GKJA 2OTNA 1XUBA 1YM5A 2GKEA 1QYAA 5H2YA 4Q2HA 2PVZA 2AZPA 5IWEA 1TM0A 5HA4A 1QY9A 3FVEA
chains in the Genus database with same CATH superfamily
4JCIA 2ENXA 3PVHA 3PW9A 3IGHX 2QB8A 2Q9JA 1WPMA 4JBDA 3WQZA 1U1VA 1SDJA 1S7JA 2LT2A 3DEVA 3W5WA 4Q60A 1WPPA 2GKJA 2QB6A 2PVZA 5IWEA 3FVEA 3EJXA 2IW4A 4J9XA 3ICJA 1I74A 5H2GA 3EDNA 3EKMA 2HAWA 2QB7A 1W61A 4JD7A 1T6KA 2OTNA 1XUBA 2MPBA 2ZXRA 1IR6A 1QYAA 2GKEA 4Q2HA 4PY9A 1TM0A 5HA4A 2Q9HA 3G7KA 1U0KA 4LG3A 1XUAA 2ZXPA 2KW7A 4K7GB 2PW0A 1W62A 1BWZA 4RPAA 2H9FA 4JUUA 4J9WA 5M47A 1U1WA 4IK0A 1K23A 4K7XA 1YM5A 5H2YA 2AZPA 5ANPA 3G98A 2ZVFA 4LB0A 3PTJA 4K8LA 4LS9A 2EB0A 2KPTA 1K20A 4DUNA 4OA3A 1GQZA 4GL6A 1U1XA 4IJZA 2ZXOA 2YMAA 1QY9A
chains in the Genus database with same CATH topology
4JCIA 2ENXA 3PVHA 3PW9A 3IGHX 2QB8A 2Q9JA 1WPMA 4JBDA 3WQZA 1U1VA 1SDJA 1S7JA 2LT2A 3DEVA 3W5WA 4Q60A 1WPPA 2GKJA 2QB6A 2PVZA 5IWEA 3FVEA 3EJXA 2IW4A 4J9XA 3ICJA 1I74A 5H2GA 3EDNA 3EKMA 2HAWA 2QB7A 1W61A 4JD7A 1T6KA 2OTNA 1XUBA 2MPBA 2ZXRA 1IR6A 1QYAA 2GKEA 4Q2HA 4PY9A 1TM0A 5HA4A 2Q9HA 3G7KA 1U0KA 4LG3A 1XUAA 2ZXPA 2KW7A 4K7GB 2PW0A 1W62A 1BWZA 4RPAA 2H9FA 4JUUA 4J9WA 5M47A 1U1WA 4IK0A 1K23A 4K7XA 1YM5A 5H2YA 2AZPA 5ANPA 3G98A 2ZVFA 4LB0A 3PTJA 4K8LA 4LS9A 2EB0A 2KPTA 1K20A 4DUNA 4OA3A 1GQZA 4GL6A 1U1XA 4IJZA 2ZXOA 2YMAA 1QY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JCI A;  4LB0 A;  3EJX A;  2Q9H A;  4J9X A;  3G7K A;  1U0K A;  4K8L A;  1XUA A;  4K7G B;  4DUN A;  5H2G A;  2PW0 A;  3EDN A;  3EKM A;  1W62 A;  1BWZ A;  2Q9J A;  4JBD A;  1U1V A;  2H9F A;  4JUU A;  1SDJ A;  4J9W A;  1S7J A;  5M47 A;  1U1W A;  4IK0 A;  1GQZ A;  1W61 A;  1U1X A;  4JD7 A;  4IJZ A;  1T6K A;  4K7X A;  4Q60 A;  2GKJ A;  2OTN A;  1XUB A;  1YM5 A;  2GKE A;  1QYA A;  5H2Y A;  4Q2H A;  2PVZ A;  2AZP A;  5IWE A;  1TM0 A;  5HA4 A;  1QY9 A;  3FVE A; 
#chains in the Genus database with same CATH topology
 4JCI A;  2ENX A;  3PVH A;  3PW9 A;  3IGH X;  2QB8 A;  2Q9J A;  1WPM A;  4JBD A;  3WQZ A;  1U1V A;  1SDJ A;  1S7J A;  2LT2 A;  3DEV A;  3W5W A;  4Q60 A;  1WPP A;  2GKJ A;  2QB6 A;  2PVZ A;  5IWE A;  3FVE A;  3EJX A;  2IW4 A;  4J9X A;  3ICJ A;  1I74 A;  5H2G A;  3EDN A;  3EKM A;  2HAW A;  2QB7 A;  1W61 A;  4JD7 A;  1T6K A;  2OTN A;  1XUB A;  2MPB A;  2ZXR A;  1IR6 A;  1QYA A;  2GKE A;  4Q2H A;  4PY9 A;  1TM0 A;  5HA4 A;  2Q9H A;  3G7K A;  1U0K A;  4LG3 A;  1XUA A;  2ZXP A;  2KW7 A;  4K7G B;  2PW0 A;  1W62 A;  1BWZ A;  4RPA A;  2H9F A;  4JUU A;  4J9W A;  5M47 A;  1U1W A;  4IK0 A;  1K23 A;  4K7X A;  1YM5 A;  5H2Y A;  2AZP A;  5ANP A;  3G98 A;  2ZVF A;  4LB0 A;  3PTJ A;  4K8L A;  4LS9 A;  2EB0 A;  2KPT A;  1K20 A;  4DUN A;  4OA3 A;  1GQZ A;  4GL6 A;  1U1X A;  4IJZ A;  2ZXO A;  2YMA A;  1QY9 A; 
#chains in the Genus database with same CATH homology
 4JCI A;  2ENX A;  3PVH A;  3PW9 A;  3IGH X;  2QB8 A;  2Q9J A;  1WPM A;  4JBD A;  3WQZ A;  1U1V A;  1SDJ A;  1S7J A;  2LT2 A;  3DEV A;  3W5W A;  4Q60 A;  1WPP A;  2GKJ A;  2QB6 A;  2PVZ A;  5IWE A;  3FVE A;  3EJX A;  2IW4 A;  4J9X A;  3ICJ A;  1I74 A;  5H2G A;  3EDN A;  3EKM A;  2HAW A;  2QB7 A;  1W61 A;  4JD7 A;  1T6K A;  2OTN A;  1XUB A;  2MPB A;  2ZXR A;  1IR6 A;  1QYA A;  2GKE A;  4Q2H A;  4PY9 A;  1TM0 A;  5HA4 A;  2Q9H A;  3G7K A;  1U0K A;  4LG3 A;  1XUA A;  2ZXP A;  2KW7 A;  4K7G B;  2PW0 A;  1W62 A;  1BWZ A;  4RPA A;  2H9F A;  4JUU A;  4J9W A;  5M47 A;  1U1W A;  4IK0 A;  1K23 A;  4K7X A;  1YM5 A;  5H2Y A;  2AZP A;  5ANP A;  3G98 A;  2ZVF A;  4LB0 A;  3PTJ A;  4K8L A;  4LS9 A;  2EB0 A;  2KPT A;  1K20 A;  4DUN A;  4OA3 A;  1GQZ A;  4GL6 A;  1U1X A;  4IJZ A;  2ZXO A;  2YMA A;  1QY9 A; 
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