The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
88
|
sequence length |
278
|
structure length |
278
|
Chain Sequence |
b'MKVSLAGQTVDVKKILNEIPKRTVTAALLEGGEIVAVEEADDEHAERKLVRRHDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGRGLGPYYLARSGVEVVEVHPDEPLGYDPVDRLDVLLTFGGNPYLTEEDVAARVYCLLTGRGFDADIAPAPENLSGRVEIMVTRGDPDEAVELLKEELPVFRIRRFLISGEFDRDELRERILEDIEPRILDPFAVRARIARAGAFSSSREAEVFIGDVLTSVGREVNLNDPRTVVTVDVLGPRVSVGVEKR'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A cytidine deaminase edits C to U in transfer RNAs in Archaea
pubmed doi rcsb |
| molecule keywords |
Predicted RNA-binding protein, contains THUMP domain
|
| source organism |
Methanopyrus kandleri
|
| molecule tags |
Rna binding protein
|
| total genus |
88
|
| structure length |
278
|
| sequence length |
278
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.5.4.35: tRNA(cytosine(8)) deaminase. |
| pdb deposition date | 2009-02-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| A | PF02926 | THUMP | THUMP domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits | ||
| Alpha Beta | 2-Layer Sandwich | THUMP fold | THUMP superfamily | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
