3GA9L

Crystal structure of bacillus anthracis transpeptidase enzyme capd, crystal form ii
Total Genus 72
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
292
structure length
286
Chain Sequence
KGTYGVSASHPLAVEEGMKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGMLIISKDKETFIDYRETTPYFTGNQKPHIGVPGFVAGMEYIHDNYGSLPMGELLQPAINYAEKGFKVDDSLTMRLDLAKPRIYSDKLSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVARAISKTAKISLEDIKGYKVEVRKPVKGNYMGYDVYTAPPPFSGVTLLQMLKLAEKKEVYKDVDHTATYMSKMEEISRIAYQDRKKNLGMDPNKMVSDKYISTMK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Capsule biosynthesis protein capD
publication title Crystal Structure of Bacillus anthracis Transpeptidase Enzyme CapD.
pubmed doi rcsb
source organism Bacillus anthracis
total genus 72
structure length 286
sequence length 292
ec nomenclature
pdb deposition date 2009-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.230 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3ga9L02
3GA9L 3G9KD
chains in the Genus database with same CATH superfamily
1UORA 2Z8IA 2XMOA 2BXFA 2DBXA 3LU6A 3UIVA 5GINA 3A73A 5D7GA 1E7BA 3WHSA 3NVKA 4K71A 4IW2A 1J7EA 2BXPA 4N0FD 5IFOA 1MIWA 2XVQA 1E7IA 3FNMA 2XSIA 4HGKA 1J78A 1NT2B 3V08A 2CKXA 4C31B 4F5UA 4L9KA 5FUOA 3KJLA 3G9KD 5IIHA 1E7HA 4OTUA 4LB2A 4D7XA 1HK1A 3SQJA 1E7EA 2BXIA 5B5TA 2JUHA 3NVIA 1BJ5A 4L9QA 2NQOA 4S1YA 1HA2A 4W4UB 3V03A 3ECPA 2AGHB 4Z69A 1KXPD 2BXQA 4Z9OA 4DM0A 2BXLA 4ZCGA 2LQHA 5GIPA 3LU8A 3H3AA 5GIOA 1MUSA 4MBEC 4BKEA 2BXGA 4ZBQA 5GHKA 1MM8A 3MHSB 3ICXA 5IIUA 4F5SA 2DYOA 3B9LA 1BM0A 3VQIA 2YDFA 2BX8A 2E0YA 3NMUA 1HK2A 2AJEA 2BXCA 2LXSA 4TQ1A 1TF0A 5ID9A 1N5UA 1E7AA 1KW2A 1E7FA 3FWCC 3JRYA 4GG2A 4HGMB 2OZBB 3H37A 5IJEA 1HK5A 3WHRA 2K0NA 2DG5A 2NNWA 4GDKB 2XW1A 1HK4A 1VFIA 4F5VA 4L8UA 2ROHA 4G03A 1SB0A 3FWBC 1O9XA 5DQFA 3TDLA 2BXEA 1FOUA 1H9ZA 2QHBA 4LB9A 4I9OA 2QMCA 3GQUA 4TQ0A 2Z8KA 1E78A 4J2VA 4E99A 3B9MA 4JK4A 4LUHA 1JNBA 3MHHB 4GDLB 3SIVB 1MIVA 1MUHA 2BXKA 1TXUA 1MA9A 1GNIA 2EFCA 2VDBA 1GNJA 3W1SA 3JQZA 2I2ZA 2BXOA 4ZC6A 3GQXA 4LA0A 4EMXA 2XW0A 3SIUB 2BXNA 4ZBKA 2LXTA 2BXDA 5HOZA 2DBWA 3CX9A 1KDXA 5BPKA 3V09A 2LOQA 2OT3A 3BPJA 2EFHA 3NVMA 4FK5B 3WHQA 1HK3A 1LNSA 2LQIA 3GA9L 4GDXA 1BKEA 2KWFA 4NAWB 2XVVA 4DHXB 5DBYA 3A75A 4F5TA 2XVWA 4ZBRA 4ZUXV 4N3ZA 2BXAA 3M99C 4PO0A 4OT2A 4BY9C 4OR0A 5IJFA 4OTTA 1AO6A 2DYMA 2DBUA 2QM6A 2BXHA 2BXBA 2EFEA 2VUFA 2KBZA 1E7GA 5IIXA 4N0UD 3KIKA 4G04A 2E0XA 4LUFA 1MIYA 5IJ5A 3PLAA 2GUTA 4G01A 4WA6B 2XVUA 1IJGA 2VUEA 4FIPB 4M70B 3LU7A 5ID7A 4IW1A 4K2CA 2Z8JA 2I30A 2BXMA 4FJCB 1H5WA 2V36A 1E7CA 1LOTA 2EFDA 1VZSA
chains in the Genus database with same CATH topology
1UORA 2Z8IA 2XMOA 2BXFA 2DBXA 3LU6A 3UIVA 5GINA 3A73A 5D7GA 1E7BA 3WHSA 3NVKA 4K71A 4IW2A 1J7EA 2BXPA 4N0FD 5IFOA 1MIWA 2XVQA 1E7IA 3FNMA 2XSIA 4HGKA 1J78A 1NT2B 3V08A 2CKXA 4C31B 4F5UA 4L9KA 5FUOA 3KJLA 3G9KD 5IIHA 1E7HA 4OTUA 4LB2A 1HK1A 3SQJA 1E7EA 2BXIA 5B5TA 2JUHA 3NVIA 1BJ5A 4L9QA 2NQOA 4S1YA 1HA2A 4W4UB 3V03A 4Z69A 1KXPD 2BXQA 4Z9OA 2BXLA 4ZCGA 5GIPA 3LU8A 3H3AA 5GIOA 4MBEC 4BKEA 2BXGA 4ZBQA 5GHKA 3MHSB 3ICXA 5IIUA 4F5SA 2DYOA 3B9LA 1BM0A 3VQIA 2YDFA 2BX8A 2E0YA 3NMUA 1HK2A 2AJEA 2BXCA 4TQ1A 1TF0A 5ID9A 1N5UA 1E7AA 1KW2A 1E7FA 3FWCC 3JRYA 4GG2A 4HGMB 2OZBB 3H37A 5IJEA 1HK5A 3WHRA 2DG5A 2NNWA 4GDKB 2XW1A 1HK4A 1VFIA 4L8UA 2ROHA 4G03A 3FWBC 1O9XA 5DQFA 3TDLA 2BXEA 1FOUA 1H9ZA 2QHBA 4LB9A 2QMCA 3GQUA 4TQ0A 2Z8KA 1E78A 4J2VA 4E99A 3B9MA 4JK4A 4LUHA 1JNBA 3MHHB 4GDLB 3SIVB 1MIVA 2BXKA 1TXUA 1MA9A 1GNIA 2EFCA 2VDBA 1GNJA 3W1SA 3JQZA 2I2ZA 2BXOA 4ZC6A 3GQXA 4LA0A 4EMXA 2XW0A 3SIUB 2BXNA 4ZBKA 2BXDA 5HOZA 2DBWA 3CX9A 5BPKA 3V09A 2LOQA 2OT3A 3NVMA 2EFHA 4FK5B 3WHQA 1HK3A 1LNSA 3GA9L 4GDXA 4NAWB 1BKEA 4DHXB 4F5TA 2XVVA 4F5VA 5DBYA 3A75A 2XVWA 4ZBRA 4ZUXV 4N3ZA 2BXAA 3M99C 4PO0A 4OT2A 4BY9C 4OR0A 5IJFA 4OTTA 1AO6A 2DYMA 2DBUA 2QM6A 2BXHA 2BXBA 2EFEA 2VUFA 2KBZA 1E7GA 5IIXA 4N0UD 3KIKA 4G04A 2E0XA 4LUFA 1MIYA 5IJ5A 3PLAA 4G01A 4WA6B 2XVUA 1IJGA 2VUEA 4FIPB 4M70B 3LU7A 5ID7A 4IW1A 4K2CA 2Z8JA 2I30A 2BXMA 4FJCB 1H5WA 2V36A 1E7CA 1LOTA 2EFDA 1VZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GA9 L;  3G9K D; 
#chains in the Genus database with same CATH topology
 1UOR A;  2Z8I A;  2XMO A;  2BXF A;  2DBX A;  3LU6 A;  3UIV A;  5GIN A;  3A73 A;  5D7G A;  1E7B A;  3WHS A;  3NVK A;  4K71 A;  4IW2 A;  1J7E A;  2BXP A;  4N0F D;  5IFO A;  1MIW A;  2XVQ A;  1E7I A;  3FNM A;  2XSI A;  4HGK A;  1J78 A;  1NT2 B;  3V08 A;  2CKX A;  4C31 B;  4F5U A;  4L9K A;  5FUO A;  3KJL A;  3G9K D;  5IIH A;  1E7H A;  4OTU A;  4LB2 A;  4D7X A;  1HK1 A;  3SQJ A;  1E7E A;  2BXI A;  5B5T A;  2JUH A;  3NVI A;  1BJ5 A;  4L9Q A;  2NQO A;  4S1Y A;  1HA2 A;  4W4U B;  3V03 A;  3ECP A;  2AGH B;  4Z69 A;  1KXP D;  2BXQ A;  4Z9O A;  4DM0 A;  2BXL A;  4ZCG A;  2LQH A;  5GIP A;  3LU8 A;  3H3A A;  5GIO A;  1MUS A;  4MBE C;  4BKE A;  2BXG A;  4ZBQ A;  5GHK A;  1MM8 A;  3MHS B;  3ICX A;  5IIU A;  4F5S A;  2DYO A;  3B9L A;  1BM0 A;  3VQI A;  2YDF A;  2BX8 A;  2E0Y A;  3NMU A;  1HK2 A;  2AJE A;  2BXC A;  2LXS A;  4TQ1 A;  1TF0 A;  5ID9 A;  1N5U A;  1E7A A;  1KW2 A;  1E7F A;  3FWC C;  3JRY A;  4GG2 A;  4HGM B;  2OZB B;  3H37 A;  5IJE A;  1HK5 A;  3WHR A;  2K0N A;  2DG5 A;  2NNW A;  4GDK B;  2XW1 A;  1HK4 A;  1VFI A;  4F5V A;  4L8U A;  2ROH A;  4G03 A;  1SB0 A;  3FWB C;  1O9X A;  5DQF A;  3TDL A;  2BXE A;  1FOU A;  1H9Z A;  2QHB A;  4LB9 A;  4I9O A;  2QMC A;  3GQU A;  4TQ0 A;  2Z8K A;  1E78 A;  4J2V A;  4E99 A;  3B9M A;  4JK4 A;  4LUH A;  1JNB A;  3MHH B;  4GDL B;  3SIV B;  1MIV A;  1MUH A;  2BXK A;  1TXU A;  1MA9 A;  1GNI A;  2EFC A;  2VDB A;  1GNJ A;  3W1S A;  3JQZ A;  2I2Z A;  2BXO A;  4ZC6 A;  3GQX A;  4LA0 A;  4EMX A;  2XW0 A;  3SIU B;  2BXN A;  4ZBK A;  2LXT A;  2BXD A;  5HOZ A;  2DBW A;  3CX9 A;  1KDX A;  5BPK A;  3V09 A;  2LOQ A;  2OT3 A;  3BPJ A;  2EFH A;  3NVM A;  4FK5 B;  3WHQ A;  1HK3 A;  1LNS A;  2LQI A;  3GA9 L;  4GDX A;  1BKE A;  2KWF A;  4NAW B;  2XVV A;  4DHX B;  5DBY A;  3A75 A;  4F5T A;  2XVW A;  4ZBR A;  4ZUX V;  4N3Z A;  2BXA A;  3M99 C;  4PO0 A;  4OT2 A;  4BY9 C;  4OR0 A;  5IJF A;  4OTT A;  1AO6 A;  2DYM A;  2DBU A;  2QM6 A;  2BXH A;  2BXB A;  2EFE A;  2VUF A;  2KBZ A;  1E7G A;  5IIX A;  4N0U D;  3KIK A;  4G04 A;  2E0X A;  4LUF A;  1MIY A;  5IJ5 A;  3PLA A;  2GUT A;  4G01 A;  4WA6 B;  2XVU A;  1IJG A;  2VUE A;  4FIP B;  4M70 B;  3LU7 A;  5ID7 A;  4IW1 A;  4K2C A;  2Z8J A;  2I30 A;  2BXM A;  4FJC B;  1H5W A;  2V36 A;  1E7C A;  1LOT A;  2EFD A;  1VZS A; 
#chains in the Genus database with same CATH homology
 1UOR A;  2Z8I A;  2XMO A;  2BXF A;  2DBX A;  3LU6 A;  3UIV A;  5GIN A;  3A73 A;  5D7G A;  1E7B A;  3WHS A;  3NVK A;  4K71 A;  4IW2 A;  1J7E A;  2BXP A;  4N0F D;  5IFO A;  1MIW A;  2XVQ A;  1E7I A;  3FNM A;  2XSI A;  4HGK A;  1J78 A;  1NT2 B;  3V08 A;  2CKX A;  4C31 B;  4F5U A;  4L9K A;  5FUO A;  3KJL A;  3G9K D;  5IIH A;  1E7H A;  4OTU A;  4LB2 A;  1HK1 A;  3SQJ A;  1E7E A;  2BXI A;  5B5T A;  2JUH A;  3NVI A;  1BJ5 A;  4L9Q A;  2NQO A;  4S1Y A;  1HA2 A;  4W4U B;  3V03 A;  4Z69 A;  1KXP D;  2BXQ A;  4Z9O A;  2BXL A;  4ZCG A;  5GIP A;  3LU8 A;  3H3A A;  5GIO A;  4MBE C;  4BKE A;  2BXG A;  4ZBQ A;  5GHK A;  3MHS B;  3ICX A;  5IIU A;  4F5S A;  2DYO A;  3B9L A;  1BM0 A;  3VQI A;  2YDF A;  2BX8 A;  2E0Y A;  3NMU A;  1HK2 A;  2AJE A;  2BXC A;  4TQ1 A;  1TF0 A;  5ID9 A;  1N5U A;  1E7A A;  1KW2 A;  1E7F A;  3FWC C;  3JRY A;  4GG2 A;  4HGM B;  2OZB B;  3H37 A;  5IJE A;  1HK5 A;  3WHR A;  2DG5 A;  2NNW A;  4GDK B;  2XW1 A;  1HK4 A;  1VFI A;  4L8U A;  2ROH A;  4G03 A;  3FWB C;  1O9X A;  5DQF A;  3TDL A;  2BXE A;  1FOU A;  1H9Z A;  2QHB A;  4LB9 A;  2QMC A;  3GQU A;  4TQ0 A;  2Z8K A;  1E78 A;  4J2V A;  4E99 A;  3B9M A;  4JK4 A;  4LUH A;  1JNB A;  3MHH B;  4GDL B;  3SIV B;  1MIV A;  2BXK A;  1TXU A;  1MA9 A;  1GNI A;  2EFC A;  2VDB A;  1GNJ A;  3W1S A;  3JQZ A;  2I2Z A;  2BXO A;  4ZC6 A;  3GQX A;  4LA0 A;  4EMX A;  2XW0 A;  3SIU B;  2BXN A;  4ZBK A;  2BXD A;  5HOZ A;  2DBW A;  3CX9 A;  5BPK A;  3V09 A;  2LOQ A;  2OT3 A;  3NVM A;  2EFH A;  4FK5 B;  3WHQ A;  1HK3 A;  1LNS A;  3GA9 L;  4GDX A;  4NAW B;  1BKE A;  4DHX B;  4F5T A;  2XVV A;  4F5V A;  5DBY A;  3A75 A;  2XVW A;  4ZBR A;  4ZUX V;  4N3Z A;  2BXA A;  3M99 C;  4PO0 A;  4OT2 A;  4BY9 C;  4OR0 A;  5IJF A;  4OTT A;  1AO6 A;  2DYM A;  2DBU A;  2QM6 A;  2BXH A;  2BXB A;  2EFE A;  2VUF A;  2KBZ A;  1E7G A;  5IIX A;  4N0U D;  3KIK A;  4G04 A;  2E0X A;  4LUF A;  1MIY A;  5IJ5 A;  3PLA A;  4G01 A;  4WA6 B;  2XVU A;  1IJG A;  2VUE A;  4FIP B;  4M70 B;  3LU7 A;  5ID7 A;  4IW1 A;  4K2C A;  2Z8J A;  2I30 A;  2BXM A;  4FJC B;  1H5W A;  2V36 A;  1E7C A;  1LOT A;  2EFD A;  1VZS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...