3GASA

Crystal structure of helicobacter pylori heme oxygenase hugz in complex with heme
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
248
structure length
248
Chain Sequence
LNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDSQGIVIGYNNNQTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKEGFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNTRFIERGAEFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords heme oxygenase
publication title Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme
rcsb
source organism Helicobacter pylori
total genus 63
structure length 248
sequence length 248
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.14.99.3: Transferred entry: 1.14.14.18.
pdb deposition date 2009-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10615 DUF2470 Protein of unknown function (DUF2470)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3gasA02
3.20.180.10 Alpha Beta Alpha-Beta Barrel Split barrel-like PNP-oxidase-like 3gasA01
1RZ1A 2HQ9A 1RZ0A 2I51A 3K86A 1JNWA 2D38A 1EJEA 1W3PA 3R5LA 3ZOEA 4XJ2A 1W3RA 2PTFA 4HMSA 2OL5A 1WGBA 1WV4A 1G76A 3F7EA 4YBNA 3ZOFA 2ASFA 3HY8A 5CHEC 3R5RA 3B5MA 3BPKA 3K88A 3DB0A 1Y30A 3RH7A 1G79A 1T9MA 3CB0A 2AQ6A 1AXJA 1CI0A 3A6RA 1WLKA 5BNCA 1G78A 3AWHA 2D36A 2HTDA 2FHQA 1YLNA 2FG9A 2QEAA 1VL7A 1I0RA 3R5YA 4YWNA 3U0IA 3BA3A 2RDEA 2NR4A 1I0SA 4ZKYA 3PFTA 1FLMA 1XXOA 1YOAA 3EC6A 4IRAA 3NFWA 3IN6A 2IMLA 3H96A 2X1JA 3FKHA 4L82A 1W9AA 4R82A 3BNKA 2FURA 3VY5A 1XHNA 2QCKA 2R0XA 4Y9IA 3DNHA 3FGEA 2OU5A 4Z85A 4F07A 2HQ7A 2HTIA 4HMUA 1G77A 5CHOA 3ZOHA 2GJGA 2D37A 2HHZA 3TGVA 3R5ZA 3CP3A 1DNLA 2ED4A 1USFA 2ARZA 4HMTA 3A6QA 2VPAA 2R6VA 3U34A 3SWJA 3ZODA 3K87A 2X1KA 2ECUA 4HX6A 3U5WA 3E4VA 5ESCA 1RFEA 4HMWA 3R5WA 2D5MA 4HMVA 4N7RC 2Q9KA 4HMXA 3HMZA 2ECRA 3AMFA 2IABA 4XHYA 5JABA 2E83A 1TY9A 2IG6A 2I02A 1USCA 2RE7A 3ZOCA 3U35A 1W3OA 1WLIA 4QVBA 3ZOGA 1W3QA 3KYFA 3VYAA 3KYGA 3VY2A 2A2JA 3A20A 3DMBA 1NRGA 3GASA 3R5PA
chains in the Genus database with same CATH superfamily
1RZ1A 2HQ9A 1RZ0A 2I51A 3K86A 1JNWA 2D38A 1EJEA 1W3PA 3R5LA 3EAAA 3ZOEA 4XJ2A 1W3RA 2PTFA 2K4QA 4HMSA 2OL5A 3V4HA 1WGBA 1WV4A 1G76A 3F7EA 4YBNA 3ZOFA 2ASFA 3HY8A 5CHEC 3R5RA 2L1TA 2GUJA 3B5MA 3BPKA 3K88A 3DB0A 1Y30A 3RH7A 1G79A 1T9MA 3CB0A 2AQ6A 1AXJA 1CI0A 3A6RA 1WLKA 5BNCA 1G78A 3AWHA 2D36A 2HTDA 2FHQA 1YLNA 2FG9A 2QEAA 1VL7A 1I0RA 3R5YA 4TV4A 4YWNA 3U0IA 3BA3A 4AI6A 2RDEA 2NR4A 1I0SA 4ZKYA 3VKGA 3PFTA 1FLMA 1XXOA 1YOAA 3EC6A 4IRAA 3NFWA 3IN6A 2IMLA 3H96A 2X1JA 3FKHA 4L82A 4W64A 1W9AA 4R82A 3BNKA 2FURA 3VY5A 1XHNA 2QCKA 2R0XA 4Y9IA 3DNHA 3FGEA 2OU5A 4Z85A 4F07A 2HQ7A 2HTIA 4AKIA 4HMUA 1G77A 5CHOA 3ZOHA 2GJGA 2D37A 2HHZA 3VKHA 4HKHA 2P5ZX 3TGVA 3R5ZA 3CP3A 1DNLA 2ED4A 1USFA 4MTKA 4UHVA 2ARZA 4HMTA 3A6QA 2VPAA 2R6VA 3U34A 3SWJA 3ZODA 3HE1A 3K87A 4AKHA 1Y12A 2ECUA 2X1KA 4HX6A 3U5WA 3E4VA 5ESCA 1RFEA 4HMWA 3R5WA 2D5MA 4HMVA 4N7RC 2Q9KA 4AKGA 4HMXA 3HMZA 2ECRA 3AMFA 2IABA 4XHYA 5JABA 2E83A 1TY9A 2IG6A 2I02A 1USCA 2RE7A 3ZOCA 3U35A 1W3OA 1WLIA 4QVBA 3ZOGA 1W3QA 3KYFA 3VYAA 3KYGA 3VY2A 2A2JA 3A20A 3DMBA 1NRGA 3GASA 3R5PA
chains in the Genus database with same CATH topology
1RZ1A 2HQ9A 1RZ0A 2I51A 3K86A 1JNWA 2D38A 1EJEA 1W3PA 3R5LA 3ZOEA 4XJ2A 1W3RA 2PTFA 4HMSA 2OL5A 1WGBA 1WV4A 1G76A 3F7EA 4YBNA 3ZOFA 2ASFA 3HY8A 5CHEC 3R5RA 3B5MA 3BPKA 3K88A 3DB0A 1Y30A 3RH7A 1G79A 1T9MA 3CB0A 2AQ6A 1AXJA 1CI0A 3A6RA 1WLKA 5BNCA 1G78A 3AWHA 2D36A 2HTDA 2FHQA 1YLNA 2FG9A 2QEAA 1VL7A 1I0RA 3R5YA 4YWNA 3U0IA 3BA3A 2RDEA 2NR4A 1I0SA 4ZKYA 3PFTA 1FLMA 1XXOA 1YOAA 3EC6A 4IRAA 3NFWA 3IN6A 2IMLA 3H96A 2X1JA 3FKHA 4L82A 1W9AA 4R82A 3BNKA 2FURA 3VY5A 1XHNA 2QCKA 2R0XA 4Y9IA 3DNHA 3FGEA 2OU5A 4Z85A 4F07A 2HQ7A 2HTIA 4HMUA 1G77A 5CHOA 3ZOHA 2GJGA 2D37A 2HHZA 3TGVA 3R5ZA 3CP3A 1DNLA 2ED4A 1USFA 2ARZA 4HMTA 3A6QA 2VPAA 2R6VA 3U34A 3SWJA 3ZODA 3K87A 2X1KA 2ECUA 4HX6A 3U5WA 3E4VA 5ESCA 1RFEA 4HMWA 3R5WA 2D5MA 4HMVA 4N7RC 2Q9KA 4HMXA 3HMZA 2ECRA 3AMFA 2IABA 4XHYA 5JABA 2E83A 1TY9A 2IG6A 2I02A 1USCA 2RE7A 3ZOCA 3U35A 1W3OA 1WLIA 4QVBA 3ZOGA 1W3QA 3KYFA 3VYAA 3KYGA 3VY2A 2A2JA 3A20A 3DMBA 1NRGA 3GASA 3R5PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RZ1 A;  2HQ9 A;  1RZ0 A;  2I51 A;  3K86 A;  1JNW A;  2D38 A;  1EJE A;  1W3P A;  3R5L A;  3ZOE A;  4XJ2 A;  1W3R A;  2PTF A;  4HMS A;  2OL5 A;  1WGB A;  1WV4 A;  1G76 A;  3F7E A;  4YBN A;  3ZOF A;  2ASF A;  3HY8 A;  5CHE C;  3R5R A;  3B5M A;  3BPK A;  3K88 A;  3DB0 A;  1Y30 A;  3RH7 A;  1G79 A;  1T9M A;  3CB0 A;  2AQ6 A;  1AXJ A;  1CI0 A;  3A6R A;  1WLK A;  5BNC A;  1G78 A;  3AWH A;  2D36 A;  2HTD A;  2FHQ A;  1YLN A;  2FG9 A;  2QEA A;  1VL7 A;  1I0R A;  3R5Y A;  4YWN A;  3U0I A;  3BA3 A;  2RDE A;  2NR4 A;  1I0S A;  4ZKY A;  3PFT A;  1FLM A;  1XXO A;  1YOA A;  3EC6 A;  4IRA A;  3NFW A;  3IN6 A;  2IML A;  3H96 A;  2X1J A;  3FKH A;  4L82 A;  1W9A A;  4R82 A;  3BNK A;  2FUR A;  3VY5 A;  1XHN A;  2QCK A;  2R0X A;  4Y9I A;  3DNH A;  3FGE A;  2OU5 A;  4Z85 A;  4F07 A;  2HQ7 A;  2HTI A;  4HMU A;  1G77 A;  5CHO A;  3ZOH A;  2GJG A;  2D37 A;  2HHZ A;  3TGV A;  3R5Z A;  3CP3 A;  1DNL A;  2ED4 A;  1USF A;  2ARZ A;  4HMT A;  3A6Q A;  2VPA A;  2R6V A;  3U34 A;  3SWJ A;  3ZOD A;  3K87 A;  2X1K A;  2ECU A;  4HX6 A;  3U5W A;  3E4V A;  5ESC A;  1RFE A;  4HMW A;  3R5W A;  2D5M A;  4HMV A;  4N7R C;  2Q9K A;  4HMX A;  3HMZ A;  2ECR A;  3AMF A;  2IAB A;  4XHY A;  5JAB A;  2E83 A;  1TY9 A;  2IG6 A;  2I02 A;  1USC A;  2RE7 A;  3ZOC A;  3U35 A;  1W3O A;  1WLI A;  4QVB A;  3ZOG A;  1W3Q A;  3KYF A;  3VYA A;  3KYG A;  3VY2 A;  2A2J A;  3A20 A;  3DMB A;  1NRG A;  3GAS A;  3R5P A; 
#chains in the Genus database with same CATH topology
 1RZ1 A;  2HQ9 A;  1RZ0 A;  2I51 A;  3K86 A;  1JNW A;  2D38 A;  1EJE A;  1W3P A;  3R5L A;  3EAA A;  3ZOE A;  4XJ2 A;  1W3R A;  2PTF A;  2K4Q A;  4HMS A;  2OL5 A;  3V4H A;  1WGB A;  1WV4 A;  1G76 A;  3F7E A;  4YBN A;  3ZOF A;  2ASF A;  3HY8 A;  5CHE C;  3R5R A;  2L1T A;  2GUJ A;  3B5M A;  3BPK A;  3K88 A;  3DB0 A;  1Y30 A;  3RH7 A;  1G79 A;  1T9M A;  3CB0 A;  2AQ6 A;  1AXJ A;  1CI0 A;  3A6R A;  1WLK A;  5BNC A;  1G78 A;  3AWH A;  2D36 A;  2HTD A;  2FHQ A;  1YLN A;  2FG9 A;  2QEA A;  1VL7 A;  1I0R A;  3R5Y A;  4TV4 A;  4YWN A;  3U0I A;  3BA3 A;  4AI6 A;  2RDE A;  2NR4 A;  1I0S A;  4ZKY A;  3VKG A;  3PFT A;  1FLM A;  1XXO A;  1YOA A;  3EC6 A;  4IRA A;  3NFW A;  3IN6 A;  2IML A;  3H96 A;  2X1J A;  3FKH A;  4L82 A;  4W64 A;  1W9A A;  4R82 A;  3BNK A;  2FUR A;  3VY5 A;  1XHN A;  2QCK A;  2R0X A;  4Y9I A;  3DNH A;  3FGE A;  2OU5 A;  4Z85 A;  4F07 A;  2HQ7 A;  2HTI A;  4AKI A;  4HMU A;  1G77 A;  5CHO A;  3ZOH A;  2GJG A;  2D37 A;  2HHZ A;  3VKH A;  4HKH A;  2P5Z X;  3TGV A;  3R5Z A;  3CP3 A;  1DNL A;  2ED4 A;  1USF A;  4MTK A;  4UHV A;  2ARZ A;  4HMT A;  3A6Q A;  2VPA A;  2R6V A;  3U34 A;  3SWJ A;  3ZOD A;  3HE1 A;  3K87 A;  4AKH A;  1Y12 A;  2ECU A;  2X1K A;  4HX6 A;  3U5W A;  3E4V A;  5ESC A;  1RFE A;  4HMW A;  3R5W A;  2D5M A;  4HMV A;  4N7R C;  2Q9K A;  4AKG A;  4HMX A;  3HMZ A;  2ECR A;  3AMF A;  2IAB A;  4XHY A;  5JAB A;  2E83 A;  1TY9 A;  2IG6 A;  2I02 A;  1USC A;  2RE7 A;  3ZOC A;  3U35 A;  1W3O A;  1WLI A;  4QVB A;  3ZOG A;  1W3Q A;  3KYF A;  3VYA A;  3KYG A;  3VY2 A;  2A2J A;  3A20 A;  3DMB A;  1NRG A;  3GAS A;  3R5P A; 
#chains in the Genus database with same CATH homology
 1RZ1 A;  2HQ9 A;  1RZ0 A;  2I51 A;  3K86 A;  1JNW A;  2D38 A;  1EJE A;  1W3P A;  3R5L A;  3ZOE A;  4XJ2 A;  1W3R A;  2PTF A;  4HMS A;  2OL5 A;  1WGB A;  1WV4 A;  1G76 A;  3F7E A;  4YBN A;  3ZOF A;  2ASF A;  3HY8 A;  5CHE C;  3R5R A;  3B5M A;  3BPK A;  3K88 A;  3DB0 A;  1Y30 A;  3RH7 A;  1G79 A;  1T9M A;  3CB0 A;  2AQ6 A;  1AXJ A;  1CI0 A;  3A6R A;  1WLK A;  5BNC A;  1G78 A;  3AWH A;  2D36 A;  2HTD A;  2FHQ A;  1YLN A;  2FG9 A;  2QEA A;  1VL7 A;  1I0R A;  3R5Y A;  4YWN A;  3U0I A;  3BA3 A;  2RDE A;  2NR4 A;  1I0S A;  4ZKY A;  3PFT A;  1FLM A;  1XXO A;  1YOA A;  3EC6 A;  4IRA A;  3NFW A;  3IN6 A;  2IML A;  3H96 A;  2X1J A;  3FKH A;  4L82 A;  1W9A A;  4R82 A;  3BNK A;  2FUR A;  3VY5 A;  1XHN A;  2QCK A;  2R0X A;  4Y9I A;  3DNH A;  3FGE A;  2OU5 A;  4Z85 A;  4F07 A;  2HQ7 A;  2HTI A;  4HMU A;  1G77 A;  5CHO A;  3ZOH A;  2GJG A;  2D37 A;  2HHZ A;  3TGV A;  3R5Z A;  3CP3 A;  1DNL A;  2ED4 A;  1USF A;  2ARZ A;  4HMT A;  3A6Q A;  2VPA A;  2R6V A;  3U34 A;  3SWJ A;  3ZOD A;  3K87 A;  2X1K A;  2ECU A;  4HX6 A;  3U5W A;  3E4V A;  5ESC A;  1RFE A;  4HMW A;  3R5W A;  2D5M A;  4HMV A;  4N7R C;  2Q9K A;  4HMX A;  3HMZ A;  2ECR A;  3AMF A;  2IAB A;  4XHY A;  5JAB A;  2E83 A;  1TY9 A;  2IG6 A;  2I02 A;  1USC A;  2RE7 A;  3ZOC A;  3U35 A;  1W3O A;  1WLI A;  4QVB A;  3ZOG A;  1W3Q A;  3KYF A;  3VYA A;  3KYG A;  3VY2 A;  2A2J A;  3A20 A;  3DMB A;  1NRG A;  3GAS A;  3R5P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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