3GB5A

Crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound to fmn
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
220
structure length
185
Chain Sequence
EHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEIKEYLDTAPVLILIFKQVYNEISVSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVTVHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Iodotyrosine dehalogenase 1
publication title Crystal structure of iodotyrosine deiodinase, a novel flavoprotein responsible for iodide salvage in thyroid glands.
pubmed doi rcsb
source organism Mus musculus
total genus 50
structure length 185
sequence length 220
ec nomenclature ec 1.21.1.1: Iodotyrosine deiodinase.
pdb deposition date 2009-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3gb5A00
2R01A 1KQBA 3E10A 5KRDA 1IDTA 3BM2A 3HZNA 2FREA 3KOQA 4EO3A 3E39A 1VFRA 1OONA 4DN2A 4QLYA 1YLRA 3TNZA 4TTBA 3GFDA 2ISKA 3PXVA 3GE5A 3X21A 3GR3A 4XOQA 2ISJA 5J6CA 1ICUA 4G8SA 1ICVA 1BKJA 3M5KA 3EO8A 3QDLA 4BN6A 1V5YA 4XOMA 4URPA 4BN7A 5KO8A 3GE6A 3H4OA 3N2SA 1YLUA 2IFAA 3TO0A 1ICRA 1KQDA 2B67A 3GH8A 2WZWA 1F5VA 1NOXA 3BM1A 3OF4A 3HJ9A 4XOOA 2WZVA 1NECA 3X22A 1OOQA 3HOIA 3K6HA 4BNBA 1KQCA 1VKWA 4QLXA 2H0UA 4TTCA 3EO7A 2ISLA 4BN9A 5HDJA 3BEMA 3GAGA 3GB5A 2BKJA 1YKIA 1OO5A 2WQFA 5KO7A 1V5ZA 1OO6A 3EK3A 2HAYA 3EOFA 3G14A 3KWKA 5HEIA 4BN8A 2YMVA 3GFAA 2I7HA 1DS7A 3GBHA 1YWQA 1ZCHA
chains in the Genus database with same CATH superfamily
2R01A 1KQBA 3E10A 1J6RA 5KRDA 1IDTA 3BM2A 3HZNA 2FREA 3KOQA 4EO3A 3E39A 1VFRA 1OONA 4DN2A 4QLYA 1YLRA 3TNZA 4TTBA 3GFDA 2ISKA 3PXVA 3GE5A 3X21A 3GR3A 4XOQA 2ISJA 5J6CA 1ICUA 4G8SA 1ICVA 1BKJA 3M5KA 3EO8A 3QDLA 4BN6A 1V5YA 4XOMA 4URPA 4BN7A 5KO8A 3GE6A 3H4OA 3N2SA 1YLUA 2IFAA 3TO0A 1ICRA 1KQDA 2B67A 3GH8A 2WZWA 1F5VA 1NOXA 3BM1A 3OF4A 3HJ9A 4XOOA 2WZVA 1NECA 3X22A 1OOQA 3HOIA 3K6HA 4BNBA 1KQCA 1VKWA 4QLXA 2H0UA 4TTCA 3EO7A 2ISLA 4BN9A 5HDJA 3BEMA 3GAGA 3GB5A 2BKJA 1YKIA 1OO5A 2WQFA 5KO7A 1V5ZA 1OO6A 3EK3A 2HAYA 3EOFA 3G14A 3KWKA 5HEIA 4BN8A 2YMVA 3GFAA 2I7HA 1DS7A 3GBHA 1YWQA 1ZCHA
chains in the Genus database with same CATH topology
2R01A 1KQBA 3E10A 1J6RA 5KRDA 1IDTA 3BM2A 3HZNA 2FREA 3KOQA 4EO3A 3E39A 1VFRA 1OONA 4DN2A 4QLYA 1YLRA 3TNZA 4TTBA 3GFDA 2ISKA 3PXVA 3GE5A 3X21A 3GR3A 4XOQA 2ISJA 5J6CA 1ICUA 4G8SA 1ICVA 1BKJA 3M5KA 3EO8A 3QDLA 4BN6A 1V5YA 4XOMA 4URPA 4BN7A 5KO8A 3GE6A 3H4OA 3N2SA 1YLUA 2IFAA 3TO0A 1ICRA 1KQDA 2B67A 3GH8A 2WZWA 1F5VA 1NOXA 3BM1A 3OF4A 3HJ9A 4XOOA 2WZVA 1NECA 3X22A 1OOQA 3HOIA 3K6HA 4BNBA 1KQCA 1VKWA 4QLXA 2H0UA 4TTCA 3EO7A 2ISLA 4BN9A 5HDJA 3BEMA 3GAGA 3GB5A 2BKJA 1YKIA 1OO5A 2WQFA 5KO7A 1V5ZA 1OO6A 3EK3A 2HAYA 3EOFA 3G14A 3KWKA 5HEIA 4BN8A 2YMVA 3GFAA 2I7HA 1DS7A 3GBHA 1YWQA 1ZCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R01 A;  1KQB A;  3E10 A;  5KRD A;  1IDT A;  3BM2 A;  3HZN A;  2FRE A;  3KOQ A;  4EO3 A;  3E39 A;  1VFR A;  1OON A;  4DN2 A;  4QLY A;  1YLR A;  3TNZ A;  4TTB A;  3GFD A;  2ISK A;  3PXV A;  3GE5 A;  3X21 A;  3GR3 A;  4XOQ A;  2ISJ A;  5J6C A;  1ICU A;  4G8S A;  1ICV A;  1BKJ A;  3M5K A;  3EO8 A;  3QDL A;  4BN6 A;  1V5Y A;  4XOM A;  4URP A;  4BN7 A;  5KO8 A;  3GE6 A;  3H4O A;  3N2S A;  1YLU A;  2IFA A;  3TO0 A;  1ICR A;  1KQD A;  2B67 A;  3GH8 A;  2WZW A;  1F5V A;  1NOX A;  3BM1 A;  3OF4 A;  3HJ9 A;  4XOO A;  2WZV A;  1NEC A;  3X22 A;  1OOQ A;  3HOI A;  3K6H A;  4BNB A;  1KQC A;  1VKW A;  4QLX A;  2H0U A;  4TTC A;  3EO7 A;  2ISL A;  4BN9 A;  5HDJ A;  3BEM A;  3GAG A;  3GB5 A;  2BKJ A;  1YKI A;  1OO5 A;  2WQF A;  5KO7 A;  1V5Z A;  1OO6 A;  3EK3 A;  2HAY A;  3EOF A;  3G14 A;  3KWK A;  5HEI A;  4BN8 A;  2YMV A;  3GFA A;  2I7H A;  1DS7 A;  3GBH A;  1YWQ A;  1ZCH A; 
#chains in the Genus database with same CATH topology
 2R01 A;  1KQB A;  3E10 A;  1J6R A;  5KRD A;  1IDT A;  3BM2 A;  3HZN A;  2FRE A;  3KOQ A;  4EO3 A;  3E39 A;  1VFR A;  1OON A;  4DN2 A;  4QLY A;  1YLR A;  3TNZ A;  4TTB A;  3GFD A;  2ISK A;  3PXV A;  3GE5 A;  3X21 A;  3GR3 A;  4XOQ A;  2ISJ A;  5J6C A;  1ICU A;  4G8S A;  1ICV A;  1BKJ A;  3M5K A;  3EO8 A;  3QDL A;  4BN6 A;  1V5Y A;  4XOM A;  4URP A;  4BN7 A;  5KO8 A;  3GE6 A;  3H4O A;  3N2S A;  1YLU A;  2IFA A;  3TO0 A;  1ICR A;  1KQD A;  2B67 A;  3GH8 A;  2WZW A;  1F5V A;  1NOX A;  3BM1 A;  3OF4 A;  3HJ9 A;  4XOO A;  2WZV A;  1NEC A;  3X22 A;  1OOQ A;  3HOI A;  3K6H A;  4BNB A;  1KQC A;  1VKW A;  4QLX A;  2H0U A;  4TTC A;  3EO7 A;  2ISL A;  4BN9 A;  5HDJ A;  3BEM A;  3GAG A;  3GB5 A;  2BKJ A;  1YKI A;  1OO5 A;  2WQF A;  5KO7 A;  1V5Z A;  1OO6 A;  3EK3 A;  2HAY A;  3EOF A;  3G14 A;  3KWK A;  5HEI A;  4BN8 A;  2YMV A;  3GFA A;  2I7H A;  1DS7 A;  3GBH A;  1YWQ A;  1ZCH A; 
#chains in the Genus database with same CATH homology
 2R01 A;  1KQB A;  3E10 A;  1J6R A;  5KRD A;  1IDT A;  3BM2 A;  3HZN A;  2FRE A;  3KOQ A;  4EO3 A;  3E39 A;  1VFR A;  1OON A;  4DN2 A;  4QLY A;  1YLR A;  3TNZ A;  4TTB A;  3GFD A;  2ISK A;  3PXV A;  3GE5 A;  3X21 A;  3GR3 A;  4XOQ A;  2ISJ A;  5J6C A;  1ICU A;  4G8S A;  1ICV A;  1BKJ A;  3M5K A;  3EO8 A;  3QDL A;  4BN6 A;  1V5Y A;  4XOM A;  4URP A;  4BN7 A;  5KO8 A;  3GE6 A;  3H4O A;  3N2S A;  1YLU A;  2IFA A;  3TO0 A;  1ICR A;  1KQD A;  2B67 A;  3GH8 A;  2WZW A;  1F5V A;  1NOX A;  3BM1 A;  3OF4 A;  3HJ9 A;  4XOO A;  2WZV A;  1NEC A;  3X22 A;  1OOQ A;  3HOI A;  3K6H A;  4BNB A;  1KQC A;  1VKW A;  4QLX A;  2H0U A;  4TTC A;  3EO7 A;  2ISL A;  4BN9 A;  5HDJ A;  3BEM A;  3GAG A;  3GB5 A;  2BKJ A;  1YKI A;  1OO5 A;  2WQF A;  5KO7 A;  1V5Z A;  1OO6 A;  3EK3 A;  2HAY A;  3EOF A;  3G14 A;  3KWK A;  5HEI A;  4BN8 A;  2YMV A;  3GFA A;  2I7H A;  1DS7 A;  3GBH A;  1YWQ A;  1ZCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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