3GBHA

Crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966) from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
212
structure length
212
Chain Sequence
MQKLTRINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDSDRYVPVLAIAIGKKAQDAHDSVRLPIDDVREFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NAD(P)H-flavin oxidoreductase
publication title Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_765521.1) from Staphylococcus epidermidis ATCC 12228 at 2.00 A resolution
rcsb
source organism Staphylococcus epidermidis atcc 12228
total genus 56
structure length 212
sequence length 212
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3gbhA00
5HDJA 4BN6A 4BN9A 2ISKA 3EO8A 4QLYA 3HJ9A 3BM2A 3GFAA 2HAYA 4EO3A 1ZCHA 1F5VA 2I7HA 2H0UA 4G8SA 3GBHA 3GE5A 3KWKA 4XOQA 3GB5A 3GFDA 3GAGA 3OF4A 3GH8A 3E10A 4TTBA 3X22A 3GR3A 1OO5A 1OO6A 2B67A 3M5KA 3TNZA 4BNBA 2FREA 4BN8A 4XOOA 1YKIA 3GE6A 1KQBA 5J6CA 1ICUA 5KO7A 1NOXA 1YLRA 5KRDA 1KQDA 2WZVA 4XOMA 1KQCA 1V5ZA 1NECA 4TTCA 1DS7A 4URPA 3BEMA 2IFAA 1ICRA 2BKJA 1IDTA 1ICVA 3PXVA 1VKWA 3EO7A 3N2SA 1VFRA 3BM1A 1OONA 2WQFA 3K6HA 5KO8A 1YLUA 5HEIA 2ISJA 2YMVA 3EK3A 1OOQA 3X21A 3HZNA 4DN2A 2R01A 1BKJA 2WZWA 3G14A 3QDLA 3EOFA 3KOQA 2ISLA 1V5YA 1YWQA 3H4OA 3TO0A 3HOIA 3E39A 4QLXA 4BN7A
chains in the Genus database with same CATH superfamily
5HDJA 4BN6A 4BN9A 2ISKA 3EO8A 4QLYA 3HJ9A 3BM2A 3GFAA 2HAYA 4EO3A 1ZCHA 1F5VA 2I7HA 2H0UA 4G8SA 3GBHA 1J6RA 3GE5A 3KWKA 4XOQA 3GB5A 3GFDA 3GAGA 3OF4A 3GH8A 3E10A 4TTBA 3X22A 3GR3A 1OO5A 1OO6A 2B67A 3M5KA 3TNZA 4BNBA 2FREA 4BN8A 4XOOA 1YKIA 3GE6A 1KQBA 5J6CA 1ICUA 5KO7A 1NOXA 1YLRA 5KRDA 1KQDA 2WZVA 4XOMA 1KQCA 1V5ZA 1NECA 4TTCA 1DS7A 4URPA 3BEMA 2IFAA 1ICRA 2BKJA 1IDTA 1ICVA 3PXVA 1VKWA 3EO7A 3N2SA 1VFRA 3BM1A 1OONA 2WQFA 3K6HA 5KO8A 1YLUA 5HEIA 2ISJA 2YMVA 3EK3A 1OOQA 3X21A 3HZNA 4DN2A 2R01A 1BKJA 2WZWA 3G14A 3QDLA 3EOFA 3KOQA 2ISLA 1V5YA 1YWQA 3H4OA 3TO0A 3HOIA 3E39A 4QLXA 4BN7A
chains in the Genus database with same CATH topology
5HDJA 4BN6A 4BN9A 2ISKA 3EO8A 4QLYA 3HJ9A 3BM2A 3GFAA 2HAYA 4EO3A 1ZCHA 1F5VA 2I7HA 2H0UA 4G8SA 3GBHA 1J6RA 3GE5A 3KWKA 4XOQA 3GB5A 3GFDA 3GAGA 3OF4A 3GH8A 3E10A 4TTBA 3X22A 3GR3A 1OO5A 1OO6A 2B67A 3M5KA 3TNZA 4BNBA 2FREA 4BN8A 4XOOA 1YKIA 3GE6A 1KQBA 5J6CA 1ICUA 5KO7A 1NOXA 1YLRA 5KRDA 1KQDA 2WZVA 4XOMA 1KQCA 1V5ZA 1NECA 4TTCA 1DS7A 4URPA 3BEMA 2IFAA 1ICRA 2BKJA 1IDTA 1ICVA 3PXVA 1VKWA 3EO7A 3N2SA 1VFRA 3BM1A 1OONA 2WQFA 3K6HA 5KO8A 1YLUA 5HEIA 2ISJA 2YMVA 3EK3A 1OOQA 3X21A 3HZNA 4DN2A 2R01A 1BKJA 2WZWA 3G14A 3QDLA 3EOFA 3KOQA 2ISLA 1V5YA 1YWQA 3H4OA 3TO0A 3HOIA 3E39A 4QLXA 4BN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HDJ A;  4BN6 A;  4BN9 A;  2ISK A;  3EO8 A;  4QLY A;  3HJ9 A;  3BM2 A;  3GFA A;  2HAY A;  4EO3 A;  1ZCH A;  1F5V A;  2I7H A;  2H0U A;  4G8S A;  3GBH A;  3GE5 A;  3KWK A;  4XOQ A;  3GB5 A;  3GFD A;  3GAG A;  3OF4 A;  3GH8 A;  3E10 A;  4TTB A;  3X22 A;  3GR3 A;  1OO5 A;  1OO6 A;  2B67 A;  3M5K A;  3TNZ A;  4BNB A;  2FRE A;  4BN8 A;  4XOO A;  1YKI A;  3GE6 A;  1KQB A;  5J6C A;  1ICU A;  5KO7 A;  1NOX A;  1YLR A;  5KRD A;  1KQD A;  2WZV A;  4XOM A;  1KQC A;  1V5Z A;  1NEC A;  4TTC A;  1DS7 A;  4URP A;  3BEM A;  2IFA A;  1ICR A;  2BKJ A;  1IDT A;  1ICV A;  3PXV A;  1VKW A;  3EO7 A;  3N2S A;  1VFR A;  3BM1 A;  1OON A;  2WQF A;  3K6H A;  5KO8 A;  1YLU A;  5HEI A;  2ISJ A;  2YMV A;  3EK3 A;  1OOQ A;  3X21 A;  3HZN A;  4DN2 A;  2R01 A;  1BKJ A;  2WZW A;  3G14 A;  3QDL A;  3EOF A;  3KOQ A;  2ISL A;  1V5Y A;  1YWQ A;  3H4O A;  3TO0 A;  3HOI A;  3E39 A;  4QLX A;  4BN7 A; 
#chains in the Genus database with same CATH topology
 5HDJ A;  4BN6 A;  4BN9 A;  2ISK A;  3EO8 A;  4QLY A;  3HJ9 A;  3BM2 A;  3GFA A;  2HAY A;  4EO3 A;  1ZCH A;  1F5V A;  2I7H A;  2H0U A;  4G8S A;  3GBH A;  1J6R A;  3GE5 A;  3KWK A;  4XOQ A;  3GB5 A;  3GFD A;  3GAG A;  3OF4 A;  3GH8 A;  3E10 A;  4TTB A;  3X22 A;  3GR3 A;  1OO5 A;  1OO6 A;  2B67 A;  3M5K A;  3TNZ A;  4BNB A;  2FRE A;  4BN8 A;  4XOO A;  1YKI A;  3GE6 A;  1KQB A;  5J6C A;  1ICU A;  5KO7 A;  1NOX A;  1YLR A;  5KRD A;  1KQD A;  2WZV A;  4XOM A;  1KQC A;  1V5Z A;  1NEC A;  4TTC A;  1DS7 A;  4URP A;  3BEM A;  2IFA A;  1ICR A;  2BKJ A;  1IDT A;  1ICV A;  3PXV A;  1VKW A;  3EO7 A;  3N2S A;  1VFR A;  3BM1 A;  1OON A;  2WQF A;  3K6H A;  5KO8 A;  1YLU A;  5HEI A;  2ISJ A;  2YMV A;  3EK3 A;  1OOQ A;  3X21 A;  3HZN A;  4DN2 A;  2R01 A;  1BKJ A;  2WZW A;  3G14 A;  3QDL A;  3EOF A;  3KOQ A;  2ISL A;  1V5Y A;  1YWQ A;  3H4O A;  3TO0 A;  3HOI A;  3E39 A;  4QLX A;  4BN7 A; 
#chains in the Genus database with same CATH homology
 5HDJ A;  4BN6 A;  4BN9 A;  2ISK A;  3EO8 A;  4QLY A;  3HJ9 A;  3BM2 A;  3GFA A;  2HAY A;  4EO3 A;  1ZCH A;  1F5V A;  2I7H A;  2H0U A;  4G8S A;  3GBH A;  1J6R A;  3GE5 A;  3KWK A;  4XOQ A;  3GB5 A;  3GFD A;  3GAG A;  3OF4 A;  3GH8 A;  3E10 A;  4TTB A;  3X22 A;  3GR3 A;  1OO5 A;  1OO6 A;  2B67 A;  3M5K A;  3TNZ A;  4BNB A;  2FRE A;  4BN8 A;  4XOO A;  1YKI A;  3GE6 A;  1KQB A;  5J6C A;  1ICU A;  5KO7 A;  1NOX A;  1YLR A;  5KRD A;  1KQD A;  2WZV A;  4XOM A;  1KQC A;  1V5Z A;  1NEC A;  4TTC A;  1DS7 A;  4URP A;  3BEM A;  2IFA A;  1ICR A;  2BKJ A;  1IDT A;  1ICV A;  3PXV A;  1VKW A;  3EO7 A;  3N2S A;  1VFR A;  3BM1 A;  1OON A;  2WQF A;  3K6H A;  5KO8 A;  1YLU A;  5HEI A;  2ISJ A;  2YMV A;  3EK3 A;  1OOQ A;  3X21 A;  3HZN A;  4DN2 A;  2R01 A;  1BKJ A;  2WZW A;  3G14 A;  3QDL A;  3EOF A;  3KOQ A;  2ISL A;  1V5Y A;  1YWQ A;  3H4O A;  3TO0 A;  3HOI A;  3E39 A;  4QLX A;  4BN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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