3GCLA

Mode of ligand binding and assignment of subsites in mammalian peroxidases: crystal structure of lactoperoxidase complexes with acetyl salycylic acid, salicylhydroxamic acid and benzylhydroxamic acid
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Binding modes of aromatic ligands to mammalian heme peroxidases with associated functional implications: crystal structures of lactoperoxidase complexes with acetylsalicylic acid, salicylhydroxamic acid, and benzylhydroxamic acid
pubmed doi rcsb
total genus 181
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2009-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3gclA00
4C1MC 3ZS0C 3N8VA 5FIWC 4KVJA 3HS5A 2PUMA 1Q4GA 4IG5A 4E1GA 3KRKA 2EFBA 2R5LA 4M11A 1CQEA 2OJVA 3KRQA 4NT3A 3HS7A 2EHAA 4FM5A 4MSFA 2OYUP 5JVYA 1HT5A 3NTGA 5IKTA 4RRWA 4PNXA 3MQEA 3N8YB 3NTBA 1IGXA 1DNUC 3QF1A 3QL6A 1IGZA 2QPKA 3UBAA 1CVUA 5F19A 1MYPC 5FDQA 3RR3A 5JW1A 3PY4A 3FAQA 4KSZA 3N8ZA 5B72A 3KK6A 4HHRA 3GCKA 3MDLA 4Y55A 5GH0A 4HHSA 3N8WB 3QH0A 4RRYA 4RS0A 5FF1A 3ZS1C 3N8YA 1PRHA 3LN1A 3ERHA 3R4XA 1DDXA 2QRBA 3V6QA 1CX2A 4PH9A 2OYEP 5COXA 3RKEA 4DL1C 3NT1A 1PTHA 4RRXA 1D2VC 3GCLA 3OLTA 1FE2A 1EQHA 4OTJA 4OEKA 1D7WC 1MHLC 5IKQA 1DIYA 3N8WA 3TGYA 2E9EA 2IKCA 3N8XA 5JVZA 1D5LC 3Q7DA 2PT3A 3QMOA 1CXPC 3OLUA 3NIUA 3NYHA 4NJBA 6COXA 4RUTA 3LN0A 3I6NA 1EQGA 5HPWA 4COXA 3R5OA 2NQXA 4OTYA 2QQTA 4O1ZA 5GLSA 4LJJA 4QYQA 1PGEA 1EBVA 4RRZA 3SXVA 4M10A 5IKVA 3NAKA 2O86A 2GJMA 3N8FA 4Z0LA 3Q9KA 3HS6A 3R55A 3ERIA 3FNLA 4KVLA 4KVKA 3S4FA 2Z5ZA 3OGWA 4N7AA 1U67A 3BXIA 3F9PC 4GN6A 1HT8A 3GC1A 3TZIA 2AYLA 3GCJA 3R5QA 4QJQA 5KIRA 1PXXA 3PGHA 5F1AA 2IPSA 5IKRA 1DNWC 4GM7A
chains in the Genus database with same CATH superfamily
4C1MC 3ZS0C 3N8VA 5FIWC 4KVJA 3HS5A 2PUMA 1Q4GA 4IG5A 4E1GA 3KRKA 2EFBA 2R5LA 4M11A 1CQEA 2OJVA 3KRQA 4NT3A 3HS7A 2EHAA 4FM5A 4MSFA 2OYUP 5JVYA 1HT5A 3NTGA 5IKTA 4RRWA 4PNXA 3MQEA 3N8YB 3NTBA 1IGXA 1DNUC 3QF1A 3QL6A 1IGZA 2QPKA 3UBAA 1CVUA 5F19A 1MYPC 5FDQA 3RR3A 5JW1A 3PY4A 3FAQA 4KSZA 3N8ZA 5B72A 3KK6A 4HHRA 3GCKA 3MDLA 4Y55A 5GH0A 4HHSA 3N8WB 3QH0A 4RRYA 4RS0A 5FF1A 3ZS1C 3N8YA 1PRHA 3LN1A 3ERHA 3R4XA 1DDXA 2QRBA 3V6QA 1CX2A 4PH9A 2OYEP 5COXA 3RKEA 4DL1C 3NT1A 1PTHA 4RRXA 1D2VC 3GCLA 3OLTA 1FE2A 1EQHA 4OTJA 4OEKA 1D7WC 1MHLC 5IKQA 1DIYA 3N8WA 3TGYA 2E9EA 2IKCA 3N8XA 5JVZA 1D5LC 3Q7DA 2PT3A 3QMOA 1CXPC 3OLUA 3NIUA 3NYHA 4NJBA 6COXA 4RUTA 3LN0A 3I6NA 1EQGA 5HPWA 4COXA 3R5OA 2NQXA 4OTYA 2QQTA 4O1ZA 5GLSA 4LJJA 4QYQA 1PGEA 1EBVA 4RRZA 3SXVA 4M10A 5IKVA 3NAKA 2O86A 2GJMA 3N8FA 4Z0LA 3Q9KA 3HS6A 3R55A 3ERIA 3FNLA 4KVLA 4KVKA 3S4FA 2Z5ZA 3OGWA 4N7AA 1U67A 3BXIA 3F9PC 4GN6A 1HT8A 3GC1A 3TZIA 2AYLA 3GCJA 3R5QA 4QJQA 5KIRA 1PXXA 3PGHA 5F1AA 2IPSA 5IKRA 1DNWC 4GM7A
chains in the Genus database with same CATH topology
4C1MC 3ZS0C 3N8VA 5FIWC 4KVJA 3HS5A 2PUMA 1Q4GA 4IG5A 4E1GA 3KRKA 2EFBA 2R5LA 4M11A 1CQEA 2OJVA 3KRQA 4NT3A 3HS7A 2EHAA 4FM5A 4MSFA 2OYUP 5JVYA 1HT5A 3NTGA 5IKTA 4RRWA 4PNXA 3MQEA 3N8YB 3NTBA 1IGXA 1DNUC 3QF1A 3QL6A 1IGZA 2QPKA 3UBAA 1CVUA 5F19A 1MYPC 5FDQA 3RR3A 5JW1A 3PY4A 3FAQA 4KSZA 3N8ZA 5B72A 3KK6A 4HHRA 3GCKA 3MDLA 4Y55A 5GH0A 4HHSA 3N8WB 3QH0A 4RRYA 4RS0A 5FF1A 3ZS1C 3N8YA 1PRHA 3LN1A 3ERHA 3R4XA 1DDXA 2QRBA 3V6QA 1CX2A 4PH9A 2OYEP 5COXA 3RKEA 4DL1C 3NT1A 1PTHA 4RRXA 1D2VC 3GCLA 3OLTA 1FE2A 1EQHA 4OTJA 4OEKA 1D7WC 1MHLC 5IKQA 1DIYA 3N8WA 3TGYA 2E9EA 2IKCA 3N8XA 5JVZA 1D5LC 3Q7DA 2PT3A 3QMOA 1CXPC 3OLUA 3NIUA 3NYHA 4NJBA 6COXA 4RUTA 3LN0A 3I6NA 1EQGA 5HPWA 4COXA 3R5OA 2NQXA 4OTYA 2QQTA 4O1ZA 5GLSA 4LJJA 4QYQA 1PGEA 1EBVA 4RRZA 3SXVA 4M10A 5IKVA 3NAKA 2O86A 2GJMA 3N8FA 4Z0LA 3Q9KA 3HS6A 3R55A 3ERIA 3FNLA 4KVLA 4KVKA 3S4FA 2Z5ZA 3OGWA 4N7AA 1U67A 3BXIA 3F9PC 4GN6A 1HT8A 3GC1A 3TZIA 2AYLA 3GCJA 3R5QA 4QJQA 5KIRA 1PXXA 3PGHA 5F1AA 2IPSA 5IKRA 1DNWC 4GM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C1M C;  3ZS0 C;  3N8V A;  5FIW C;  4KVJ A;  3HS5 A;  2PUM A;  1Q4G A;  4IG5 A;  4E1G A;  3KRK A;  2EFB A;  2R5L A;  4M11 A;  1CQE A;  2OJV A;  3KRQ A;  4NT3 A;  3HS7 A;  2EHA A;  4FM5 A;  4MSF A;  2OYU P;  5JVY A;  1HT5 A;  3NTG A;  5IKT A;  4RRW A;  4PNX A;  3MQE A;  3N8Y B;  3NTB A;  1IGX A;  1DNU C;  3QF1 A;  3QL6 A;  1IGZ A;  2QPK A;  3UBA A;  1CVU A;  5F19 A;  1MYP C;  5FDQ A;  3RR3 A;  5JW1 A;  3PY4 A;  3FAQ A;  4KSZ A;  3N8Z A;  5B72 A;  3KK6 A;  4HHR A;  3GCK A;  3MDL A;  4Y55 A;  5GH0 A;  4HHS A;  3N8W B;  3QH0 A;  4RRY A;  4RS0 A;  5FF1 A;  3ZS1 C;  3N8Y A;  1PRH A;  3LN1 A;  3ERH A;  3R4X A;  1DDX A;  2QRB A;  3V6Q A;  1CX2 A;  4PH9 A;  2OYE P;  5COX A;  3RKE A;  4DL1 C;  3NT1 A;  1PTH A;  4RRX A;  1D2V C;  3GCL A;  3OLT A;  1FE2 A;  1EQH A;  4OTJ A;  4OEK A;  1D7W C;  1MHL C;  5IKQ A;  1DIY A;  3N8W A;  3TGY A;  2E9E A;  2IKC A;  3N8X A;  5JVZ A;  1D5L C;  3Q7D A;  2PT3 A;  3QMO A;  1CXP C;  3OLU A;  3NIU A;  3NYH A;  4NJB A;  6COX A;  4RUT A;  3LN0 A;  3I6N A;  1EQG A;  5HPW A;  4COX A;  3R5O A;  2NQX A;  4OTY A;  2QQT A;  4O1Z A;  5GLS A;  4LJJ A;  4QYQ A;  1PGE A;  1EBV A;  4RRZ A;  3SXV A;  4M10 A;  5IKV A;  3NAK A;  2O86 A;  2GJM A;  3N8F A;  4Z0L A;  3Q9K A;  3HS6 A;  3R55 A;  3ERI A;  3FNL A;  4KVL A;  4KVK A;  3S4F A;  2Z5Z A;  3OGW A;  4N7A A;  1U67 A;  3BXI A;  3F9P C;  4GN6 A;  1HT8 A;  3GC1 A;  3TZI A;  2AYL A;  3GCJ A;  3R5Q A;  4QJQ A;  5KIR A;  1PXX A;  3PGH A;  5F1A A;  2IPS A;  5IKR A;  1DNW C;  4GM7 A; 
#chains in the Genus database with same CATH topology
 4C1M C;  3ZS0 C;  3N8V A;  5FIW C;  4KVJ A;  3HS5 A;  2PUM A;  1Q4G A;  4IG5 A;  4E1G A;  3KRK A;  2EFB A;  2R5L A;  4M11 A;  1CQE A;  2OJV A;  3KRQ A;  4NT3 A;  3HS7 A;  2EHA A;  4FM5 A;  4MSF A;  2OYU P;  5JVY A;  1HT5 A;  3NTG A;  5IKT A;  4RRW A;  4PNX A;  3MQE A;  3N8Y B;  3NTB A;  1IGX A;  1DNU C;  3QF1 A;  3QL6 A;  1IGZ A;  2QPK A;  3UBA A;  1CVU A;  5F19 A;  1MYP C;  5FDQ A;  3RR3 A;  5JW1 A;  3PY4 A;  3FAQ A;  4KSZ A;  3N8Z A;  5B72 A;  3KK6 A;  4HHR A;  3GCK A;  3MDL A;  4Y55 A;  5GH0 A;  4HHS A;  3N8W B;  3QH0 A;  4RRY A;  4RS0 A;  5FF1 A;  3ZS1 C;  3N8Y A;  1PRH A;  3LN1 A;  3ERH A;  3R4X A;  1DDX A;  2QRB A;  3V6Q A;  1CX2 A;  4PH9 A;  2OYE P;  5COX A;  3RKE A;  4DL1 C;  3NT1 A;  1PTH A;  4RRX A;  1D2V C;  3GCL A;  3OLT A;  1FE2 A;  1EQH A;  4OTJ A;  4OEK A;  1D7W C;  1MHL C;  5IKQ A;  1DIY A;  3N8W A;  3TGY A;  2E9E A;  2IKC A;  3N8X A;  5JVZ A;  1D5L C;  3Q7D A;  2PT3 A;  3QMO A;  1CXP C;  3OLU A;  3NIU A;  3NYH A;  4NJB A;  6COX A;  4RUT A;  3LN0 A;  3I6N A;  1EQG A;  5HPW A;  4COX A;  3R5O A;  2NQX A;  4OTY A;  2QQT A;  4O1Z A;  5GLS A;  4LJJ A;  4QYQ A;  1PGE A;  1EBV A;  4RRZ A;  3SXV A;  4M10 A;  5IKV A;  3NAK A;  2O86 A;  2GJM A;  3N8F A;  4Z0L A;  3Q9K A;  3HS6 A;  3R55 A;  3ERI A;  3FNL A;  4KVL A;  4KVK A;  3S4F A;  2Z5Z A;  3OGW A;  4N7A A;  1U67 A;  3BXI A;  3F9P C;  4GN6 A;  1HT8 A;  3GC1 A;  3TZI A;  2AYL A;  3GCJ A;  3R5Q A;  4QJQ A;  5KIR A;  1PXX A;  3PGH A;  5F1A A;  2IPS A;  5IKR A;  1DNW C;  4GM7 A; 
#chains in the Genus database with same CATH homology
 4C1M C;  3ZS0 C;  3N8V A;  5FIW C;  4KVJ A;  3HS5 A;  2PUM A;  1Q4G A;  4IG5 A;  4E1G A;  3KRK A;  2EFB A;  2R5L A;  4M11 A;  1CQE A;  2OJV A;  3KRQ A;  4NT3 A;  3HS7 A;  2EHA A;  4FM5 A;  4MSF A;  2OYU P;  5JVY A;  1HT5 A;  3NTG A;  5IKT A;  4RRW A;  4PNX A;  3MQE A;  3N8Y B;  3NTB A;  1IGX A;  1DNU C;  3QF1 A;  3QL6 A;  1IGZ A;  2QPK A;  3UBA A;  1CVU A;  5F19 A;  1MYP C;  5FDQ A;  3RR3 A;  5JW1 A;  3PY4 A;  3FAQ A;  4KSZ A;  3N8Z A;  5B72 A;  3KK6 A;  4HHR A;  3GCK A;  3MDL A;  4Y55 A;  5GH0 A;  4HHS A;  3N8W B;  3QH0 A;  4RRY A;  4RS0 A;  5FF1 A;  3ZS1 C;  3N8Y A;  1PRH A;  3LN1 A;  3ERH A;  3R4X A;  1DDX A;  2QRB A;  3V6Q A;  1CX2 A;  4PH9 A;  2OYE P;  5COX A;  3RKE A;  4DL1 C;  3NT1 A;  1PTH A;  4RRX A;  1D2V C;  3GCL A;  3OLT A;  1FE2 A;  1EQH A;  4OTJ A;  4OEK A;  1D7W C;  1MHL C;  5IKQ A;  1DIY A;  3N8W A;  3TGY A;  2E9E A;  2IKC A;  3N8X A;  5JVZ A;  1D5L C;  3Q7D A;  2PT3 A;  3QMO A;  1CXP C;  3OLU A;  3NIU A;  3NYH A;  4NJB A;  6COX A;  4RUT A;  3LN0 A;  3I6N A;  1EQG A;  5HPW A;  4COX A;  3R5O A;  2NQX A;  4OTY A;  2QQT A;  4O1Z A;  5GLS A;  4LJJ A;  4QYQ A;  1PGE A;  1EBV A;  4RRZ A;  3SXV A;  4M10 A;  5IKV A;  3NAK A;  2O86 A;  2GJM A;  3N8F A;  4Z0L A;  3Q9K A;  3HS6 A;  3R55 A;  3ERI A;  3FNL A;  4KVL A;  4KVK A;  3S4F A;  2Z5Z A;  3OGW A;  4N7A A;  1U67 A;  3BXI A;  3F9P C;  4GN6 A;  1HT8 A;  3GC1 A;  3TZI A;  2AYL A;  3GCJ A;  3R5Q A;  4QJQ A;  5KIR A;  1PXX A;  3PGH A;  5F1A A;  2IPS A;  5IKR A;  1DNW C;  4GM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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