3GE5A

Crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310) from porphyromonas gingivalis w83 at 1.70 a resolution
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
176
structure length
176
Chain Sequence
IPQDFRLIEDFFRTRRSVRKFIDRPVEEEKLMAILEAGRIAPSAHNYQPWHFLVVREEEGRKRLAPCSQQPWFPGAPIYIITLGDHQRAWKRGAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDIPSHMTPVSILALGYGDPTVPPREAFNRKTIEEVVSFEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords putative NAD(P)H:FMN oxidoreductase
publication title Crystal structure of putative NAD(P)H:FMN oxidoreductase (NP_904626.1) from PORPHYROMONAS GINGIVALIS W83 at 1.70 A resolution
rcsb
source organism Porphyromonas gingivalis w83
total genus 41
structure length 176
sequence length 176
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3ge5A00
1BKJA 4G8SA 5HEIA 3EOFA 3GAGA 1NECA 2WQFA 2BKJA 2IFAA 5KO8A 3EO7A 1NOXA 3GE6A 3GFDA 4QLXA 1VKWA 3TO0A 4DN2A 3TNZA 1YKIA 3QDLA 1ICUA 4QLYA 4TTBA 4XOQA 5HDJA 2WZVA 5KRDA 3KWKA 3N2SA 5J6CA 3GFAA 1OONA 1KQDA 3GR3A 4EO3A 1OOQA 3HJ9A 3EK3A 2YMVA 3K6HA 4BN8A 3GBHA 3KOQA 3EO8A 3X22A 2ISKA 5KO7A 3GB5A 4BN6A 1IDTA 3OF4A 3G14A 1DS7A 2ISLA 2H0UA 1ZCHA 2I7HA 3PXVA 4URPA 3X21A 1KQBA 3E39A 4BNBA 3BM1A 4BN7A 1V5ZA 3BM2A 4XOMA 2WZWA 1KQCA 3H4OA 3GH8A 3GE5A 2FREA 3HOIA 4BN9A 2B67A 1ICRA 1VFRA 1YLRA 2R01A 3HZNA 1F5VA 1V5YA 3M5KA 1YLUA 2HAYA 1OO5A 4TTCA 3BEMA 1OO6A 3E10A 1YWQA 1ICVA 4XOOA 2ISJA
chains in the Genus database with same CATH superfamily
1BKJA 4G8SA 5HEIA 3EOFA 3GAGA 1NECA 2WQFA 2BKJA 2IFAA 5KO8A 3EO7A 1NOXA 3GE6A 3GFDA 4QLXA 1VKWA 3TO0A 4DN2A 3TNZA 1YKIA 3QDLA 1ICUA 4QLYA 4TTBA 4XOQA 5HDJA 2WZVA 5KRDA 3KWKA 3N2SA 5J6CA 3GFAA 1OONA 1KQDA 3GR3A 4EO3A 1OOQA 3HJ9A 3EK3A 2YMVA 3K6HA 4BN8A 3GBHA 3KOQA 1J6RA 3EO8A 3X22A 2ISKA 5KO7A 3GB5A 4BN6A 1IDTA 3OF4A 3G14A 1DS7A 2ISLA 2H0UA 1ZCHA 2I7HA 3PXVA 4URPA 3X21A 1KQBA 3E39A 4BNBA 3BM1A 4BN7A 1V5ZA 3BM2A 4XOMA 2WZWA 1KQCA 3H4OA 3GH8A 3GE5A 2FREA 3HOIA 4BN9A 2B67A 1ICRA 1VFRA 1YLRA 2R01A 3HZNA 1F5VA 1V5YA 3M5KA 1YLUA 2HAYA 1OO5A 4TTCA 3BEMA 1OO6A 3E10A 1YWQA 1ICVA 4XOOA 2ISJA
chains in the Genus database with same CATH topology
1BKJA 4G8SA 5HEIA 3EOFA 3GAGA 1NECA 2WQFA 2BKJA 2IFAA 5KO8A 3EO7A 1NOXA 3GE6A 3GFDA 4QLXA 1VKWA 3TO0A 4DN2A 3TNZA 1YKIA 3QDLA 1ICUA 4QLYA 4TTBA 4XOQA 5HDJA 2WZVA 5KRDA 3KWKA 3N2SA 5J6CA 3GFAA 1OONA 1KQDA 3GR3A 4EO3A 1OOQA 3HJ9A 3EK3A 2YMVA 3K6HA 4BN8A 3GBHA 3KOQA 1J6RA 3EO8A 3X22A 2ISKA 5KO7A 3GB5A 4BN6A 1IDTA 3OF4A 3G14A 1DS7A 2ISLA 2H0UA 1ZCHA 2I7HA 3PXVA 4URPA 3X21A 1KQBA 3E39A 4BNBA 3BM1A 4BN7A 1V5ZA 3BM2A 4XOMA 2WZWA 1KQCA 3H4OA 3GH8A 3GE5A 2FREA 3HOIA 4BN9A 2B67A 1ICRA 1VFRA 1YLRA 2R01A 3HZNA 1F5VA 1V5YA 3M5KA 1YLUA 2HAYA 1OO5A 4TTCA 3BEMA 1OO6A 3E10A 1YWQA 1ICVA 4XOOA 2ISJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BKJ A;  4G8S A;  5HEI A;  3EOF A;  3GAG A;  1NEC A;  2WQF A;  2BKJ A;  2IFA A;  5KO8 A;  3EO7 A;  1NOX A;  3GE6 A;  3GFD A;  4QLX A;  1VKW A;  3TO0 A;  4DN2 A;  3TNZ A;  1YKI A;  3QDL A;  1ICU A;  4QLY A;  4TTB A;  4XOQ A;  5HDJ A;  2WZV A;  5KRD A;  3KWK A;  3N2S A;  5J6C A;  3GFA A;  1OON A;  1KQD A;  3GR3 A;  4EO3 A;  1OOQ A;  3HJ9 A;  3EK3 A;  2YMV A;  3K6H A;  4BN8 A;  3GBH A;  3KOQ A;  3EO8 A;  3X22 A;  2ISK A;  5KO7 A;  3GB5 A;  4BN6 A;  1IDT A;  3OF4 A;  3G14 A;  1DS7 A;  2ISL A;  2H0U A;  1ZCH A;  2I7H A;  3PXV A;  4URP A;  3X21 A;  1KQB A;  3E39 A;  4BNB A;  3BM1 A;  4BN7 A;  1V5Z A;  3BM2 A;  4XOM A;  2WZW A;  1KQC A;  3H4O A;  3GH8 A;  3GE5 A;  2FRE A;  3HOI A;  4BN9 A;  2B67 A;  1ICR A;  1VFR A;  1YLR A;  2R01 A;  3HZN A;  1F5V A;  1V5Y A;  3M5K A;  1YLU A;  2HAY A;  1OO5 A;  4TTC A;  3BEM A;  1OO6 A;  3E10 A;  1YWQ A;  1ICV A;  4XOO A;  2ISJ A; 
#chains in the Genus database with same CATH topology
 1BKJ A;  4G8S A;  5HEI A;  3EOF A;  3GAG A;  1NEC A;  2WQF A;  2BKJ A;  2IFA A;  5KO8 A;  3EO7 A;  1NOX A;  3GE6 A;  3GFD A;  4QLX A;  1VKW A;  3TO0 A;  4DN2 A;  3TNZ A;  1YKI A;  3QDL A;  1ICU A;  4QLY A;  4TTB A;  4XOQ A;  5HDJ A;  2WZV A;  5KRD A;  3KWK A;  3N2S A;  5J6C A;  3GFA A;  1OON A;  1KQD A;  3GR3 A;  4EO3 A;  1OOQ A;  3HJ9 A;  3EK3 A;  2YMV A;  3K6H A;  4BN8 A;  3GBH A;  3KOQ A;  1J6R A;  3EO8 A;  3X22 A;  2ISK A;  5KO7 A;  3GB5 A;  4BN6 A;  1IDT A;  3OF4 A;  3G14 A;  1DS7 A;  2ISL A;  2H0U A;  1ZCH A;  2I7H A;  3PXV A;  4URP A;  3X21 A;  1KQB A;  3E39 A;  4BNB A;  3BM1 A;  4BN7 A;  1V5Z A;  3BM2 A;  4XOM A;  2WZW A;  1KQC A;  3H4O A;  3GH8 A;  3GE5 A;  2FRE A;  3HOI A;  4BN9 A;  2B67 A;  1ICR A;  1VFR A;  1YLR A;  2R01 A;  3HZN A;  1F5V A;  1V5Y A;  3M5K A;  1YLU A;  2HAY A;  1OO5 A;  4TTC A;  3BEM A;  1OO6 A;  3E10 A;  1YWQ A;  1ICV A;  4XOO A;  2ISJ A; 
#chains in the Genus database with same CATH homology
 1BKJ A;  4G8S A;  5HEI A;  3EOF A;  3GAG A;  1NEC A;  2WQF A;  2BKJ A;  2IFA A;  5KO8 A;  3EO7 A;  1NOX A;  3GE6 A;  3GFD A;  4QLX A;  1VKW A;  3TO0 A;  4DN2 A;  3TNZ A;  1YKI A;  3QDL A;  1ICU A;  4QLY A;  4TTB A;  4XOQ A;  5HDJ A;  2WZV A;  5KRD A;  3KWK A;  3N2S A;  5J6C A;  3GFA A;  1OON A;  1KQD A;  3GR3 A;  4EO3 A;  1OOQ A;  3HJ9 A;  3EK3 A;  2YMV A;  3K6H A;  4BN8 A;  3GBH A;  3KOQ A;  1J6R A;  3EO8 A;  3X22 A;  2ISK A;  5KO7 A;  3GB5 A;  4BN6 A;  1IDT A;  3OF4 A;  3G14 A;  1DS7 A;  2ISL A;  2H0U A;  1ZCH A;  2I7H A;  3PXV A;  4URP A;  3X21 A;  1KQB A;  3E39 A;  4BNB A;  3BM1 A;  4BN7 A;  1V5Z A;  3BM2 A;  4XOM A;  2WZW A;  1KQC A;  3H4O A;  3GH8 A;  3GE5 A;  2FRE A;  3HOI A;  4BN9 A;  2B67 A;  1ICR A;  1VFR A;  1YLR A;  2R01 A;  3HZN A;  1F5V A;  1V5Y A;  3M5K A;  1YLU A;  2HAY A;  1OO5 A;  4TTC A;  3BEM A;  1OO6 A;  3E10 A;  1YWQ A;  1ICV A;  4XOO A;  2ISJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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